Isozymes and DNA markers in gene conservation of forest trees

For long-lived plants that have to cope with high temporal and spatial environmental heterogeneity, genetic diversity is of prime importance for species persistence. Detrimental anthropogenic impact on the gene pool of forest trees calls for conservation of genetic resources. Potentials and limitations of isozymes and DNA markers in forest genetic conservation are reviewed. These markers can contribute to conservation with respect to the delimitations of species and hybrid zones, as well as the assessment of genetic diversity within and among populations. Markers are valuable to identify resource populations, since today‘s genetic diversity in forest trees is predominantly the result of plant history (e.g. glacial refuges, migration). Several suggestions have been put forward to optimize sampling of in situ or ex situ populations on the grounds of marker data. Restraint in this area is recommended. Different types of genetic markers (terpenes, isozymes, nuclear and extrachromosomal DNA polymorphisms) and quantitative traits yield different information about genetic diversity and population differentiation. Hence identification of resource populations should not solely be based upon a certain marker type or on quantitative traits alone. The capability of available markers to predict or assess adaptive potentials in forest tree populations is still very limited. This revised version was published online in August 2006 with corrections to the Cover Date.     

Growth patterns of early versus late successional multipurpose trees of the western Himalaya

In the mid-western Himalaya (altitude 1350 m, rainfall 1100 mm), multipurpose trees found as escapees in agricultural fields or naturally growing in the forests, play an important role in providing fuel, fooder and small timber to the farmers. Shoot elogation, and tree architecture of 4 year old trees of Grewia optiva, Robinia pseudoacacia and Celtis australis (early successionals), and Quercus leucotrichophora, Q. glauca and Ilex odorata (late successionals), were analyzed. All the late successional species showed a proleptic type of bud and branch production, while the early successional trees made growth through syllepsis. The shoot elongation differed significantly (P <0.05) with the crown position, and ranged from 11 to 30 cm in different species. Early successional species tended to maintain a comparatively narrow crown and showed a significantly (P <0.05) higher ramification ratio, and multilayered canopy. The late successionals, in contrast, showed a wide crown with monolayered canopy, adapted to the weak light intensity. There was only one flush of leaves in Q. leucotrichophora and Q. glauca while in the rest of the species there were two distinct flush periods. The results are important for the management of agroforestry trees.     

A phylogenetic study of the free-living amoeba

Immunological distances were determined for four strains of the free-living amoeba classified as Amoeba proteus, two strains classified as Polychaos dubia and a single strain classified as Chaos carolinensis. The data show that the _ShP strain does not belong to the proteus group; that A. proteus is more closely related to C. carolinensis and is derived from Chaos as is the _ShP strain; that P. dubia and C. carolinensis are the more distantly related species and appear to be the first of the above to have diverged from a common ancestor; and that the amoebae have a long evolutionary history. The accuracy of the phylogenetic tree and the distance Wagner network was discussed. Since the amoebae may be polyphyletic in origin, the latter was assumed to be a more accurate representation of the immunological distance data.     

Resistenzphysiologische Grundlagen der evolutiven Kälteakklimatisation von Sproßpflanzen

Gradations in cold resistance of plants with different latitudinal and altitudinal distribution, and the various categories of chilling and freezing resistance are hypothesized to be evolutionary steps of adaptive responses to increasing low temperature stress and annual seasonality. The gradual lowering of the critical phase transition temperature of biomembrane lipids, the capacity of persistent supercooling of tissues, and the development of a dormancy linked freezing-tolerance are considered to be essential mechanisms resulting in improved acclimatation to low temperature climates.

     

Studies on epiphytic flora of a tropical rain forest in Southwestern Nigeria

Bark microflora of 12 rainforest trees were examined. Crustose, foliose, and fruticose forms of lichens were observed. Bacillus sp., Erwinia sp., Micrococcus sp., Proteus sp., and Pseudomonas sp. were the five genera of bacteria recorded while three genera of Cyanobacteria; Entophysalis, Gleocapsa and Stigonema were observed. In the algal division, three genera of Chlorophyta found are Chlorococcum, Pleurococcus and Physolinum. Only one diatom, Cocconeis sp. was present on just one tree. Most of the epiphytic microflora found are mainly terrestrial and their spores might have been deposited on the barks by air, or dust-currents. While moisture is regarded as the most critical factor in growth of bark microflora, other factors like texture of the bark, insolation and especially chemical characteristics of the barks may play a key role in occurrence and distribution of micro-organisms on them.     

Effects of chemical composition on nitrogen mineralization from green manures of seven tropical leguminous trees

Green manures from seven tropical leguminous trees were incubated with soil to determine the rates and controls of net nitrogen release. Fresh green manure (leaves and succulent twigs) was mixed with moist soil and incubated in polyethylene bags. Net N mineralization from green manures was estimated by the accumulation of extractable ammonium and nitrate minus the accumulation in soil alone. Patterns of N mineralization were complex, differed among species, and at 12 weeks ranged from 10 to 65 percent of original green-manure N. Cumulative net N mineralization was negatively correlated with initial soluble polyphenol content in the early phases of decomposition (1 through 8 weeks) and with initial lignin content in later phases (4 through 12 weeks). Neither initial percent N nor lignin: N ratio were strongly correlated with N mineralization. The best chemical index of N release was the initial polyphenol: N ratio. This study confirms previous findings that N mineralization from tropical legumes is controlled more by soluble polyphenols than by lignin or N content.     

The old REH theory remains unsatisfactory and the new REH theory is problematical - a reply to holmquist and jukes

Summary In response to criticism of REH theory (Fitch 1980), Holmquist and Jukes (1981) have mostly avoided the criticism or misunderstood it. Since they themselves state in their response that Amino acid sequence data alone cannot be used to estimate total nucleotide substitutions, they agree with the criticism. Most of their paper treats the newer theory (here designated as the REHN theory) which attempts to use the nucleotide sequences encoding proteins to better estimate total nucleotide substitutions (Holmquist and Pearl 1980). Since I made no criticism of REHN theory, their comments are frequently beside the point of my original criticism of REH theory. Nevertheless, it is shown here that REHN theory is also unsatisfactory in that: One, the varions are now more clearly defined but in such a way as to preclude the same codon from suffering a nucleotide substitution in more than one evolutionary interval. Two, the set of codons that accepts silent substitutions is identical to the set that accepts amino acid changing nucleotide substitutions. Three, the uncertainty in the REH estimate is considerable in that alternative excellent fits to the same observatuonal data may give alternative REH values that differ significantly even before stochastic variation and selective bias are considered. Four, the fit of their model to data is an irrelevancy where there are zero degrees of freedom.     

The relation between spruce monoculture and incipient podzolisation in ochreous brown earths of the Belgian Ardennes

Summary The effects of coniferous monoculture on the distribution of C, Fe and Al in the upper horizons of brown ochreous earths of the Belgian Ardennes were investigated by comparing 5 soil profiles developed under an 80 year old spruce stand with another 5 profiles developed under a climactic broad-leaved forest (beechwood).Organic carbon, Fe and Al were extracted with 0.1N NaOH/Na-tetraborate solution buffered at pH 9.7: recent studies have shown that this extraction is particularly appropriate for the detection of incipient podzolisation in brown earths-brown podzolic soils intergrades.Even if most of the classic podzolisation indexes fail to illustrate differences, nevertheless our results show that fulvic acids and organo-ferric complexes are present in significantly greater amounts in the upper part of the cambic (B)₁ horizon of the soils developed under conifers. Moreover, this podzolic tendancy is confirmed by the weathering patterns of the clay minerals in the A₁(B) horizons developed under spruces, i.e. a more pronouced weathering of chloritic layers than those observed in the beechwood soil, with a correlative genesis of more abundant smectite-like minerals. One may therefore conclude that the change in the humus type (moder to mor) after the planting of spruce trees, has been sufficient, within the local climatic and edaphic context, to promote incipient podzolisation.     

Origins of immunoglobulin heavy chain domains

Summary Using computer programs that analyze the evolutionary history and probability of relationship of protein sequences, we have investigated the gene duplication events that led to the present configuration of immunoglobulin C regions, with particular attention to the origins of the homology regions (domains) of the heavy chains. We conclude that all of the sequenced heavy chains share a common ancestor consisting of four domains and that the two shorter heavy chains, alpha and gamma, have independently lost most of the second domain. These conclusions allow us to align corresponding regions of these sequences for the purpose of deriving evolutionary trees. Three independent internal gene duplications are postulated to explain the observed pattern of relationships among the four domains: first a duplication of the ancestral single domain C region, followed by independent duplications of the resulting first and last domains. In these studies there was no evidence of crossing-over and recombination between ancestral chains of different classes; however, certain types of recombinations would not be detectable from the available sequence data.     

入侵植物喜旱莲子草和本地种接骨草光合生理特征对增温响应的差异

利用红外加热器模拟增温,比较入侵植物喜旱莲子草和本地种接骨草的光合特性对增温响应的差异,以预测气候变暖背景下入侵植物的入侵潜力,并为筛选替代控制植物提供依据。结果表明:增温导致喜旱莲子草和接骨草的叶绿素a/b值分别比对照显著提高6.21%和降低5.55%。无论增温与否,接骨草的叶绿素b含量显著高于喜旱莲子草,而叶绿素a/b值则相反。增温导致喜旱莲子草净光合速率显著提高9.23%,由于气孔导度增大引起蒸腾速率大幅度增加,使得其水分利用效率比对照显著降低10.64%。增温仅导致接骨草的气孔导度显著增加10.95%,而对其他气体交换特征无显著影响。对照条件下,尽管接骨草的气孔导度和胞间CO_2浓度分别显著低于喜旱莲子草7.03%和4.57%,但是前者的净光合速率和水分利用效率分别显著高于后者10.30%和11.92%。增温条件下,两种植物的净光合速率和气孔导度无显著差异,由于接骨草的蒸腾速率显著低于喜旱莲子草18.02%,故其水分利用效率显著高于后者26.45%。增温、物种及其两者的交互作用对光补偿点、光饱和点、最大净光合速率、暗呼吸速率和初始量子效率等光响应参数影响均不显著。总之,对照条件下,接骨草凭借较高的叶绿素b含量、净光合速率和水分利用效率,比喜旱莲子草具有更强的光合能力。但增温后,接骨草的光合优势被削弱。研究从光合生理角度证明接骨草有望作为喜旱莲子草的替代控制植物,但是未来气候变化背景下喜旱莲子草的入侵潜力可能增强。