Computational Identification of Protein-Protein Interactions in Rice Based on the Predicted Rice Interactome Network

Plant protein-protein interaction networks have not been identified by large-scale experiments. In order to better understand the protein interactions in rice, the Predicted Rice Interactome Network (PRIN; http://bis.zju.edu.cn/ prin/) presented 76,585 predicted interactions involving 5,049 rice proteins. After mapping genomic features of rice (GO annotation, subcellular localization prediction, and gene expression), we found that a well-annotated and biologically significant network is rich enough to capture many significant functional linkages within higher-order biological systems, such as pathways and biological processes. Furthermore, we took MADS-box do- main-containing proteins and circadian rhythm signaling pathways as examples to demonstrate that functional protein complexes and biological pathways could be effectively expanded in our predicted network. The expanded molecular network in PRIN has considerably improved the capability of these analyses to integrate existing knowledge and provide novel insights into the function and coordination of genes and gene networks.     

Songs differing in consistency elicit differential aggressive response in territorial birds

Acoustic signals during intrasexual interactions may help receivers to establish the cost and benefits of engaging in a confrontation versus avoiding the cost of escalation. Although birdsong repertoires have been previously suggested as providing information during agonistic encounters, the cost (time/neural resources) of assessing large repertoires may decrease the efficiency of the signal for mutual assessment. Acoustic-structural features may, therefore, be used to enable a fast and accurate assessment during this kind of encounters. Recently, it has been suggested that the consistency of songs may play a key role during intrasexual interactions in bird species. Using a playback experiment in a colour-ringed great tit population, we tested the hypothesis that songs differing in consistency may elicit a differential response, indicating that the signal is salient for the receivers. Great tit males clearly responded more aggressively towards highly consistent songs. Our findings, together with previous evidence of increased song consistency with age in the great tit, suggest that song consistency provides information on experience or dominance in this species, and this phenomenon may be more widespread than currently acknowledged.     

KELP PATCH DYNAMICS IN THE FACE OF INTENSE HERBIVORY: STABILITY OF AGARUM CLATHRATUM (PHAEOPHYTA) STANDS AND ASSOCIATED FLORA ON URCHIN BARRENS1

The brown alga Agarum clathratum (Dumortier) is the only large, perennial, fleshy macrophyte commonly found on urchin‐dominated barrens in the northwestern North Atlantic. We examined the spatial and temporal stability of A. clathratum stands and their impact on algal recruitment in the Mingan Islands, northern Gulf of St. Lawrence. The stands were highly stable in space and time, with only small intersite variations. The percent cover of A. clathratum in 144‐m² areas increased by 6.5%–11.4% over a 2‐year period, and most changes in abundance occurred at the edge of the stands. The surface area of small (<13 m²) single stands of A. clathratum increased by approximately 1.8%·month^?1, although marked increases (>95%) occurred during winter, largely because adjacent stands merged into larger single stands. Mature stands of A. clathratum appear to enhance algal recruitment, as juvenile A. clathratum and the understory red alga Ptilota serrata (Kützing) were orders of magnitude more abundant inside than outside the stands. The experimental removal of the A. clathratum canopy (1‐m² portions) had no long‐term effect on the abundance of A. clathratum, which within 14 months had recolonized most of the cleared areas. In contrast to juvenile A. clathratum, the abundance of P. serrata rapidly decreased after canopy removal. Our results demonstrate that A. clathratum stands are a stable component of urchin barrens in spite of the heavy grazing that typically occurs there. Maintenance and expansion of A. clathratum stands and associated flora appear to depend on positive interactions with self‐defended adult A. clathratum.     

Resistance of fast- and slow-growing subalpine fir to pheromone-induced attack by western balsam bark beetle (Coleoptera: Scolytinae)

Abstract 1 We investigated the resistance of fast‐ and slow‐growing subalpine fir to pheromone‐induced attack by western balsam bark beetle at two sites in the interior of British Columbia, Canada. 2 Attack success by the beetle and subsequent tree mortality were higher in slow‐growing trees than in fast‐growing trees. 3 Fast‐growing trees were more likely to produce secondary resin, and in greater quantities, than slow‐growing trees after attack. 4 Host vigour (indicated by recent radial growth) was positively related to the induced defense response and resistance of subalpine fir to bark beetle attack. These results are discussed in the context of plant defense and plant–herbivore interaction hypotheses. 5 Given the preference of western balsam bark beetle for weakened trees, as well as the reduced defenses and increased mortality rates in less vigorous trees, effective management tactics for this beetle may include strategies that increase the growth and vigour of its subalpine fir host.     

Contrasting exotic Solenopsis invicta and native Forelius pruinosus ants as mutualists with Catalpa bignonioides, a native plant

Abstract. 1. The suitability of the red imported fire ant Solenopsis invicta Buren and a native ant Forelius pruinosus (Roger) as participants in a food-for-protection mutualism with a native nectaried tree Catalpa bignonioides Walter was compared.
2. The mean mortality of folivore larvae of Ceratomia catalpae Boisduval was similar for S. invicta and F. pruinosus although S. invicta attacked fewer caterpillar aggregations and was a devastating pupal predator. Solenopsis invicta also differed from the native ant in that it attacked the parasitoid Cotesia congregata Say, another plant mutualist, and visited extrafloral nectaries less frequently.
3. Habitats invaded by S. invicta are characterised by a scarcity of both herbivores and of beneficial insects that visit extrafloral nectaries. The plants do not require protection, and extrafloral nectaries are visited rarely. Although plants are defended incidentally by S. invicta , the insect-plant mutualism therein is greatly simplified or defunct.     

Effects of grazing and ant/beetle interaction on seed production in the legume Vicia sepium in a seminatural grassland

Abstract.  1. Seed production can be affected by cattle grazing, insect herbivores, and seed predators. Bush vetch, Vicia sepium L. (Fabaceae), possess extra floral nectaries (EFNs), which can attract ants that act as plant defenders.
2. In this field study, four different manipulations were used to investigate interactions between V. sepium , ants, aphids, and seed predators, mainly Bruchus atomarius. The experiment was set up in grazed and non-grazed plots in a semi-natural grassland in south-central Sweden.
3. Grazing negatively affected number of V. sepium buds, flowers, and pods. Seed set, defined as the number of developed seeds per number of ovules in a pod, was higher in grazed plots. Ant abundance, however, was not affected by grazing. Ten different ant species were found on V. sepium and the number of ants was positively correlated with the presence of EFNs. Aphids were found only when ants were excluded from the plants. Pod and seed production of V. sepium plants was not affected by the presence of ants. The seed predator B. atomarius was not affected by the presence of ants. No support was found for the supposition that V. sepium benefited from attracting ants by producing extra floral nectar.
4. A small observational study of V. sepium plants in shrub ( Rosa dumalis ) plots compared with grassland plots was added to the experimental study . Vicia sepium plants were longer and had higher seed-set (seeds/ovules) in shrub plots than in grassland plots.     

An ultrastructural study of the relationship between the mite Floracarus perrepae Knihinicki & Boczek (Acariformes: Eriophyidae) and the fern Lygodium microphyllum (Lygodiaceae)

Abstract  The ultrastructure of the mite Floracarus perrepae was investigated in relation to its host, Lygodium microphyllum , the Old World climbing fern. Floracarus perrepae has been suggested as a means of biological control for the fern, which is an aggressive weed in tropical areas. Feeding by the mite induces a change in the size of epidermal cells, and cell division is stimulated by mite feeding, causing the leaf margin to curl over into a roll with two to three windings. The enlarged epidermal layer greatly increases its cytoplasmic contents, which become a nutritive tissue for the mite and its progeny. Damage by the mite ultimately debilitates the fern. The structure and depth of stylet penetration by the mite, and the thickness of the epidermal cell wall of L. microphyllum , do not appear to account for the mite's differential ability to induce leaf rolling in its co-adapted host from south-east Queensland but not in the invasive genotype of the fern in Florida.