Management of Hydrocotyle ranunculoides L.f., an aquatic invasive weed of urban waterways in Western Australia

Hydrocotyle ranunculoides L.f. is a stoloniferous perennial plant with floating and emergent leaves that is native to Europe. It is commonly used as an aquarium plant with little published information on its biology and natural range. In 1983 H. ranunculoides was first observed in the urban drainage network in the Canning River Regional Park, Western Australia. By 1991 the plant had extended throughout the drainage network into the river and adjacent wetlands. H. ranunculoides formed extensive mats, disrupting the ecology and recreational uses of the waterways, and posed a threat to other waterways. It is not known to be invasive in other Australian waterways. A group of state and local government and community members assessed environmental, technical and social interactions and developed an integrated managementstrategy for the weed, using a combination of physical, chemical and ecological techniques. The environmental significance of the affected waterways required the programme to be accompanied by appropriate ecological surveillance. The initial short-term control phase was completed successfully. An assessment of water quality and aquatic invertebrates during the initial phase showed only short-term disruption of river ecology following physical and chemical control. The long-term eradication phase is on-going.     

Bioagent based integrated management of Phytophthora blight of pigeonpea

Phytophthora blight (Phytophthora drechsleri f. sp. cajani) is one of the major yield limiting factors of short duration varieties of pigeonpea (Cajanus cajan). For eco-friendly and sustainable management of the disease, four antagonists, Pseudomonas fluorescens, Bacillus subtilis, Trichoderma viride and T. hamatum, were evaluated under in vitro and in vivo conditions. P. fluorescens produced maximum inhibition zone, while Trichoderma species overgrew on the host mycelium and caused lysis. The fungicides apron (metalaxyl), ridomil MZ (metalaxyl + mancozeb), capton (captaf), difolatan (captafol), thiram (tetramethylthiuram disulphide) and bavistin (carbendazim) at both 0.3 and 0.6% were found to be compatible with P. fluorescens while B. subtilis was compatible only with apron at 0.3%. T. viride grew and sporulated well at 0.3 and 0.6% apron and 0.2% ridomil MZ. The bioagents proved to have potential and those which were compatible under in vitro were evaluated under field conditions. The efficacy of fungicide in combination with bioagents was greater compared to fungicide alone. The integration of P. fluorescens with apron or ridomil MZ as seed treatment significantly reduced the Phytophthora blight incidence and enhanced seed germination and grain yield.     

Integrated Structural Modeling of Full-Length LRH-1 Reveals Inter-domain Interactions Contribute to Receptor Structure and Function

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Selection and modeling sustainable urbanization indicators: A responsibility-based method

The responsibility borne by governmental departments measured by a set of indicators is a key factor affecting the performance of urban sustainability. Thus, responsibility analysis can guide the selection of sustainability indicators. In line with the principle of Management by Objective (MBO), this paper aims to introduce a responsibility-based method, named Strategic goal-Responsibility department-Response (SRR), for selecting sustainable urbanization indicators. By applying this method, indicators are selected from the perspective of concerned departments’ responsibility. In developing the SRR model, the tool of Responsibility Assignment Matrix is used to identify the concerned departments who assume responsibilities in the process of implementing sustainable urbanization. The content analysis is used to analyze the work scope and definitions of the concerned departments and sustainable urbanization indicators that can measure the responsibility performance of the concerned departments are filtered out. A case study of Jinan city in China is used to demonstrate the procedures of using the proposed method. Based on the strategic goals of Jinan city, 20 responsibility departments and 152 initial indicators are identified by using the SRR framework. The case study reveals that the method is a feasible and effective tool in assisting policy makers to select sustainable urbanization indicators.     

Integrated Human and Ecological Risk Assessment: A Case Study of Ultraviolet Radiation Effects on Amphibians,Coral, Humans,and Oceanic Primary Productivity

Ultraviolet radiation (UVR) is a naturally occurring stressor to most forms of life. The sole relevant source of this stressor is the sun. The Earth's stratospheric ozone layer reduces the amount of UVR that reaches the Earth's surface. The potential for continued depletion of this ozone layer and environmental changes that increase the penetrance of aquatic habitat, both due to human activities, and the subsequent increase in UVR are global environmental concerns for both humans and ecosystems. An integrated risk assessment provides efficiency in data gathering, analysis and reporting by enabling risk assessors to use the combined knowledge from many disciplines to evaluate overall risk. This report describes the steps and example information that could be used for an integrated risk assessment but is not an actual risk assessment with all its associated calculations and conclusions. It is intended to illustrate the advantages of the integrated risk assessment approach for evaluating adverse effects of a nonchemical stressor.     

GLUT1 and GLUT9 as major contributors to glucose influx in HepG2 cells identified by a high sensitivity intramolecular FRET glucose sensor

Genetically encoded FRET glucose nanosensors have proven to be useful for imaging glucose flux in HepG2 cells. However, the dynamic range of the original sensor was limited and thus it did not appear optimal for high throughput screening of siRNA populations for identifying proteins involved in regulation of sugar flux. Here we describe a hybrid approach that combines linker-shortening with fluorophore-insertion to decrease the degrees of freedom for fluorophore positioning leading to improved nanosensor dynamics. We were able to develop a novel highly sensitive FRET nanosensor that shows a 10-fold higher ratio change and dynamic range (0.05-11 mM) in vivo, permitting analyses in the physiologically relevant range. As a proof of concept that this sensor can be used to screen for proteins playing a role in sugar flux and its control, we used siRNA inhibition of GLUT family members and show that GLUT1 is the major glucose transporter in HepG2 cells and that GLUT9 contributes as well, however to a lower extent. GFP fusions suggest that GLUT1 and 9 are preferentially localized to the plasma membrane and thus can account for the transport activity. The improved sensitivity of the novel glucose nanosensor increases the reliability of in vivo glucose flux analyses, and provides a new means for the screening of siRNA collections as well as drugs using high-content screens.     

Terrestrial Passive Integrated Transponder Antennae for Tracking Small Animal Movements

ABSTRACT Measuring terrestrial movements of small animals poses a substantial technological challenge. We developed very long (up to 130 m) passive integrated transponder (PIT) detectors with which we tracked salamanders (Caudata) migrating from breeding ponds to their upland habitat >200 m away. In all 60 trials, salamanders were detected when released near the antennae. In a second test, we tracked 7 of 14 tagged marbled salamanders (Ambystoma opacum) migrating >65 m, well beyond the area protected by existing wetland buffer regulations in Massachusetts, USA. The mean rate of movement for these salamanders (x̄ = 0.9 m/min; SE = 0.1 m/min) was substantially higher than rates of movement reported for related salamanders with radio-implants. These PIT antennae offer researchers a means to study small animal movements with less disruption of the animals’ natural movement patterns than is caused by other available techniques.     

Integrating high-throughput microRNA and mRNA expression data to identify risk mRNA signature for pancreatic cancer prognosis

Pancreatic cancer is a malignancy of the digestive system characterized by poor prognosis. A number of prognostic messenger RNA (mRNA) signatures have been identified by using the high-throughput expression profiles. MicroRNAs (miRNA) play a critical role in regulating multiple cellular functions. However, no such integrated analysis of miRNAs and mRNAs for studying the prognostic mechanisms of pancreatic cancer has been reported. In this study, we first identified prognostic mRNAs and miRNAs based on The Cancer Genome Atlas datasets, and then performed an enrichment analysis to explore the underlying biological mechanisms involved in pancreatic cancer prognosis at the mRNA level. Furthermore, we performed an integrated analysis of mRNAs and miRNAs to identify prognostic subpathways, which were closely associated with pancreatic cancer genes and tumor hallmarks and involved in hypoxia, oxidative phosphyorylation and xenobiotic metabolisms. Meanwhile, we performed a random walk algorithm based on global network, prognostic mRNAs and miRNAs, and identified top risk mRNAs as the prognostic signature. Finally, an independent testing set was used to confirm the predictive power of the top mRNA signature, and most of these genes involved were known oncogenes. In conclusion, we performed a series of integrated analyses by comprehensively exploring pancreatic cancer prognosis and systematically optimized the prognostic signature for clinical use.     

New approach for evaluating habitat stability using scarce records for both historical and contemporary specimens: a case study using Carabidae specimen records

Natural history collections, such as specimen records, are crucial resources for conservation and habitat management. However, these data are usually scarce compared to physical environmental data (e.g., digital terrain maps) that we often have little species data and a lot of physical environmental data with which to evaluate habitats. In this paper, we propose a method for evaluating habitat stability using scarce natural history records and abundant physical environmental data. We used both historical and contemporary specimen records of carabid beetles (areas in which records of the same species were recorded during both periods) and evaluated the attributes of these areas using terrain characteristics. We found two common terrain characteristics among the occupied areas: large total river length and low variation in elevation. These terrain characteristics suggest that habitats of carabid species have been conserved in disturbed and wet environments for a long time. These results are consistent with the ecological characteristics of carabid beetles. Our study shows that scarce natural history collections, combined with ingenuity, can be useful for evaluating habitats.     

Soil-moisture conditions indicated by field-layer plants help identify vulnerable forests in the forest-steppe of semi-arid Southern Siberia

High variability in soil-moisture conditions is typical for semi-arid forest-steppe ecosystems where precipitation varies greatly over time. Plant species that inhabit these environments integrate responses to broadly fluctuating wetness conditions. Indirect assessment of contrasting habitat wetness based on plant indicator values, species frequency, and species coverage was carried out in two sites representing the larch (Larix sibirica) and pine (Pinus sylvestris) forest-steppe communities. For the larch forest-steppe, we found that plant community composition and spatial structure depended strongly on wetness. In addition, we found that the vegetation was clearly differentiated into forest stands and steppe communities, depending on the slope aspect. There was also a strong correlation between dissimilarities of species composition and differences in habitat wetness revealed in the larch forest-steppe. In contrast, soil properties, such as gravel and stone content were found to be a key factor in the spatial distribution of plant species composition in the pine-forest-steppe communities. Indirect assessment of moisture conditions in the forest-steppe habitats, based on the field-layer plant species, was found to be preferable for indicating soil water deficits in the forest. Furthermore, as long-term observational data is often lacking, indirect assessment of the forest-steppe vegetation provides an opportunity to identify vulnerable forests at the marginal distribution. Based on indirect assessments of soil-moisture conditions, and taking into account differences in potential drought resistance between larch and pine forests, we concluded that increasing aridity will cause the replacement of Siberian larch by Scots pine in the South Siberian forest-steppe landscape. Consequently, in the future it is likely that forest-steppe typological diversity will decrease, and the semi-arid landscape may become more monotonous.