Phylogeography and genetic structure of the threatened Canarian Juniperus cedrus (Cupressaceae)

We used plastid sequences (trnL, trnL‐trnF, petN‐psbM and trnT‐trnL) to infer the phylogenetic relationships and inter‐island connections of the Canarian Juniperus cedrus, and AFLP fingerprints to assess its genetic diversity patterns. Maximum Likelihood, Maximum Parsimony and Bayesian methods suggest independent colonization events for the three Macaronesian junipers and support the monophyly of J. cedrus. Plastid sequences reveal a low genetic diversity (three haplotypes) and do not provide sufficient information to resolve its temporal and geographical origin. AFLPs indicate a greater isolation in J. cedrus than in other Macaronesian trees with similar distributions and dispersal syndromes. Gran Canaria harbours the least genetically diverse population, which justifies immediate conservation actions. This island and Tenerife also show independent genetic structure, meaning that genetic exchange from other islands should be avoided in eventual reinforcements. Populations from La Palma and La Gomera show the highest genetic diversity levels and number of polymorphic AFLPs, probably because a lower incidence of felling has allowed a less dramatic influence of genetic bottlenecks. We suggest that management efforts should prioritize populations from these islands to preserve the evolutionary potential of the species, but we also stress the importance of knowledge of the evolutionary history, genetic structure and ecological interactions in conservation strategies. © 2014 The Linnean Society of London, Botanical Journal of the Linnean Society, 2014, 175 , 376–394.     

New rodents (Cricetidae) from the Neogene of Curaçao and Bonaire,Dutch Antilles

Cordimus, a new genus of cricetid rodent, is described from Neogene deposits on the islands of Curaçao and Bonaire, Dutch Antilles. The genus is characterized by strongly cuspidate molars, the presence of mesolophs in most upper molars and the absence of mesolophids in lower molars. Similarities with the early cricetid Copemys from the Miocene of North America coupled with apparent derived characters shared with the subfamily Sigmodontinae suggest that Cordimus may be close to the root of the sigmodontine lineage, a possibility that remains to be tested through explicit phylogenetic analysis. Three species are recognized on the basis of size and details of molar morphology. Cordimus hooijeri sp. nov. is described from Bonaire on the basis of Holocene owl pellet material that consists of dentaries and postcranial material only. This species is presumed to be extinct, but focused surveys are needed to confirm this hypothesis. Cordimus debuisonjei sp. nov. and Cordimus raton sp. nov. are described from deposits on Tafelberg Santa Barbara in Curaçao. Although the age of these deposits is not known, they are most likely of late Pliocene or early Pleistocene age. Both are represented by numerous isolated molars and some osteological material.     

A Note on Idle Oil and Gas Platforms (Idle Iron) in the Gulf of Mexico

U.S. federal regulations require that an offshore oil and gas lease be cleared of all structures within one year after production on the lease ceases. Recently, the Minerals Management Service has begun to encourage operators to remove idle oil and gas platforms (known as "idle iron") on producing leases in a more timely manner. The purpose of this note is to quantify the amount of idle iron that exists in the Gulf of Mexico and to describe its geographic distribution and ownership patterns.­     

Molecular survey of morphological subspecies reveals new mitochondrial lineages in Podarcis muralis (Squamata: Lacertidae) from the Tuscan Archipelago (Italy)

Recent analyses of molecular markers have significantly revised the traditional taxonomy of Podarcis species (Squamata: Lacertidae), leading to critically reconsider the taxonomic value of several subspecies described only on morphological bases. In fact, lizards often exhibit high morphological plasticity both at the intra‐specific and the intra‐population level, especially on islands, where phenotypic divergences are mainly due to local adaptation, rather than to evolutionary differentiation. The Common wall lizard Podarcis muralis exhibits high morphological variability in biometry, pholidosis values and colour pattern. Molecular analyses have confirmed the key role played by the Italian Peninsula as a multi‐glacial refuge for P. muralis, pointing out the lack of congruence between mitochondrial lineages and the four peninsular subspecies currently recognized. Here, we analyse a portion of the protein‐encoding cytochrome b gene in the seven subspecies described for the Tuscan Archipelago (Italy), in order to test whether the mitochondrial haplotypes match the morphologically based taxonomy proposed for Common wall lizard. We also compare our haplotypes with all the others from the Italian Peninsula to investigate the presence of unique genetic lineages in insular populations. Our results do not agree completely with the subspecific division based on morphology. In particular, the phylogenetic analyses show that at least four subspecies are characterized by very similar haplotypes and fall into the same monophyletic clade, whereas the other three subspecies are closer to peninsular populations from central Italy. From these results, we conclude that at least some subspecies could be better regarded as simple eco‐phenotypes; in addition, we provide an explanation for the distinctiveness of exclusive lineages found in the archipelago, which constituted a refuge for this species during last glacial periods.     

Evolution of an invasive rodent on an archipelago as revealed by molar shape analysis: the house mouse in the Canary Islands

Aim The aim of this paper is to identify the patterns in the morphological differentiation in Canary Island mice, based on fossil and modern samples. In order to achieve this, the mouse species present on the archipelago were first compared with a set of continental mice. The differences between the continental and Canary Island samples, and among the Canary Island samples, provide insights into the processes of colonization and the subsequent insular evolution. Location Canary archipelago. Methods An outline analysis based on Fourier transformation was used to quantify shape differences between lower molars. Together with the fossil and modern Canary Island samples, a reference set of genotyped continental populations of the commensal Mus musculus and the wild Mus spretus was used for comparison. Results The morphometric analysis showed that all the mouse specimens from the Canary Islands and Cape Verde belonged to Mus musculus domesticus. Lower molars of extant mice from La Gomera, El Hierro, Gran Canaria, Tenerife, and to a lesser degree from Lanzarote, were similar to those of genotyped M. m. domesticus from the continent, while teeth of extant mice from Fuerteventura were more divergent. Fossil mice from Fuerteventura were very similar to the extant representatives on this island, and similar to the fossil mice on the nearby islands of Lobos and La Graciosa. Main conclusions The mouse present on the Canary archipelago has been identified as the house mouse M. m. domesticus. Based on the shape of the lower molar, the Canary Island mice are divergent from the continental ones, but the degree of divergence varies with the geography of the archipelago. Overall, populations from eastern islands are more divergent from the continental mice than populations from western ones. Fossil populations indicate that this situation was established several centuries ago. Two main factors may have contributed to this pattern: the appearance of different types of environment on the islands since the successful settlement of the mouse, and/or the number of subsequent introductions of continental individuals via shipping.     

The phytogeographical affinities of the Pitcairn Islands – a model for south‐eastern Polynesia?

Aim To identify how the Pitcairn group relates biogeographically to the south‐eastern Polynesian region and if, as a subset of the regions flora, it can then be used as a model for biogeographical analyses. Location The Pitcairn group (25°4′ S, 130°06′ W) comprises four islands: Pitcairn, a relatively young, high volcanic Island; Henderson, an uplifted atoll, the uplift caused by the eruption of Pitcairn; and two atolls, Ducie and Oeno. The remote location, young age and range of island types found in the Pitcairn Island group makes the group ideal for the study of island biogeography and evolution. Methods A detailed literature survey was carried out and several data sets were compiled. Dispersal method, propagule number and range data were collected for each of the 114 species that occurs in the Pitcairn group, and environmental data was also gathered for islands in Polynesia. Analyses were carried out using non‐metric multidimensional scaling and clustering techniques. Results The flora of the Pitcairn Islands is derived from the flora of other island groups in the south‐eastern Polynesian region, notably those of the Austral, Society and Cook Islands. Species with a Pacific‐wide distribution dominate the overall Pitcairn group flora. However, each of the islands show different patterns; Pitcairn is dominated by species with Pacific, Polynesian and endemic distributions, with anemochory as the dominant dispersal method (39.5%); Henderson is also dominated by species with Pacific, Polynesian and endemic distributions, but zoochory is the dominant dispersal method (59.4); Oeno and Ducie are dominated by Pantropic species with hydrochory as the most common dispersal method (52.9% and 100%, respectively). Main conclusions ? Habitat availability is the most significant factor determining the composition and size of the flora. ? South‐east Polynesia is a valid biogeographical unit, and should include the Cook, Austral, Society, Marquesas, Gambier, Tuamotu and Pitcairn Islands with Rapa, but should exclude Easter Island, Tonga and Samoa. ? Regionalization schemes should take island type into consideration. ? The Pitcairn Island group can serve as a useful model for Pacific biogeographical analyses.     

Contemporary climate change alters the pace and drivers of extinction

Contemporary climate change is expected to affect the distributions of most species, but the nature, tempo, and mechanics of contemporary range shifts are still largely speculative. Here, we use fine‐scale distributional records developed over the past Century, combined with spatially comprehensive microclimatic data, to demonstrate a dramatic shift in the range of a climate‐sensitive mammal and to infer the increasingly important role of climate in local extinctions of this species across a 38.2 million‐ha area. Changes in the distribution of the American pika (Ochotona princeps) throughout the Great Basin ecoregion were characterized using records from 1898–2008, revealing a nearly five‐fold increase in the rate of local extinction and an 11‐fold increase in the rate of upslope range retraction during the last ten years, compared with during the 20th Century. Four of ten local pika extinctions have occurred since 1999, and across this ecoregion the low‐elevation range boundary for this species is now moving upslope at an average rate of about 145 m per decade. The rapid, ecoregional range shift of this small, talus‐dwelling species stands in remarkable contrast with the dynamics and determinants of endangerment previously observed for most terrestrial species, and to earlier extinction determinants for O. princeps in this region. Further investigation of widely distributed species will clarify rates at which biotic response to environmental change is occurring, and how factors driving that change are evolving in different portions of the earth.     

The multiple fuzzy origins of woodiness within Balsaminaceae using an integrated approach. Where do we draw the line?

Background and Aims

The family Balsaminaceae is essentially herbaceous, except for some woodier species that can be described as ‘woody’ herbs or small shrubs. The family is nested within the so-called balsaminoid clade of Ericales, including the exclusively woody families Tetrameristaceae and Marcgraviaceae, which is sister to the remaining families of the predominantly woody order. A molecular phylogeny of Balsaminaceae is compared with wood anatomical observations to find out whether the woodier species are derived from herbaceous taxa (i.e. secondary woodiness), or whether woodiness in the family represents the ancestral state for the order (i.e. primary woodiness).

Methods

Wood anatomical observations of 68 Impatiens species and Hydrocera triflora, of which 47 are included in a multigene phylogeny, are carried out using light and scanning electron microscopy and compared with the molecular phylogenetic insights.

Key Results

There is much continuous variation in wood development between the Impatiens species studied, making the distinction between herbaceousness and woodiness difficult. However, the most woody species, unambiguously considered as truly woody shrubs, all display paedomorphic wood features pointing to secondary woodiness. This hypothesis is further supported by the molecular phylogeny, demonstrating that these most woody species are derived from herbaceous (or less woody) species in at least five independent clades. Wood formation in H. triflora is mostly confined to the ribs of the stems and shows paedomorphic wood features as well, suggesting that the common ancestor of Balsaminaceae was probably herbaceous.

Conclusions

The terms ‘herbaceousness’ and ‘woodiness’ are notoriously difficult to use in Balsaminaceae. However, anatomical observations and molecular sequence data show that the woodier species are derived from less woody or clearly herbaceous species, demonstrating that secondary woodiness has evolved in parallel.