Ala258Phe substitution in Bacillus sp. YX-1 glucose dehydrogenase improves its substrate preference for xylose

Bacillus sp. YX-1 glucose dehydrogenase (BsGDH) with good solvent resistance catalyzes the oxidation of β-d-glucose to d-glucono-1,5-lactone. Xylose is a recyclable resource from hemicellulase hydrolysis. In this work, to improve the preference of BsGDH for xylose, we designed seven mutants inside or adjacent to the substrate binding pocket using site-directed mutagenesis. Among all mutants, Ala258Phe mutant displayed the highest activity of 7.59 U mg⁻¹ and nearly 8-folds higher k_cat/K_m value towards xylose than wild-type BsGDH. The kinetic constants indicated that the A258F mutation effectively altered the transition state. By analysis of modeled protein structure, Ala258Phe created a space to facilitate the reactivity towards xylose. A258F mutant retained good solvent resistance in glycol, ethyl caprylate, octane, decane, cyclohexane, nonane, etc. as with BsGDH. This work provides a protein engineering approach to modify the substrate stereo-preference of alcohol dehydrogenase and a promising enzyme for cofactor regeneration in chiral catalysis.     

Gut Microbiome Fermentation Determines the Efficacy of Exercise for Diabetes Prevention

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Genetic studies on seedling vigour in sesame

Genetic studies were carried out on seedling and agronomic characters amongst 50 sesame genotypes to estimate the genetic variation, determine the relationships amongst the characters and identify rapidly growing genotypes with vigorous seedling growth. The contribution of genetic variance was highest for the two mature characters, days to first flower (95.6%) and number of nodes to first flower (95.2%), and was medium/high (50–75%) for most of the seedling characters. Strong positive genetic correlations were obtained between various cotyledon and early leaf characteristics measured at 20 days after sowing. Based on these results several genotypes were identified as having rapid seedling growth and these could form an initial gene pool to provide material for screening for tolerance to sesame flea beetle.     

NESTMATE RECOGNITION AND KIN RECOGNITION IN ANTS

Abstract  All ants (Hymenoptera, Formicidae) are highly eusocial insects that are characterized by reproductive division of labor with sterile castes (worker and soldier) helping fertile castes (queen and male) to reproduce.
Ant societies, like other complex animal societies, have developed a sophisticated communication system, in which recognition behaviors are frequently involved Recognition abilities allow individuals to orient and modulate their behaviors effectively and appropriately in response to the characteristics andlor signals expressed by other organisms. Among recognition behaviors, nestmate recognition and kin recognition mechanisms have attracted great attention of sociobiologists, ecologists, insect physiologists and biochemists since 1970's. This is parallel with the popularization of Hamilton's kin selection theory. The present paper aims at reviewing the current understanding on nestmate/kin recognition in ants. This review consists of three parts. The first part concerns the diversity of recognition behaviors and their ecological implications with emphasis on nestmatelkin recognition; in the second part, the current understandings on the mechanism of nestmatelkin recognition are outlined; and in the third part, we discuss the ontogenetic development of nestmate recognition behavior and naturally mixed colonies. The study of the integration mechanism of social parasite may provide heuristic clues to the understanding of kin/nestmate recognition system.     

Persistence and recolonisation determine success of bog restoration for aquatic invertebrates: a comment on Mazerolle et al. (2006)

1. Mazerolle et al. (2006) concluded that some aquatic invertebrate species, including bog‐associated species, readily colonise man‐made bog pools. In contrast, in Dutch bog remnants Van Duinen et al. (2003) found that a considerable number of bog‐associated species do not colonise newly created bog pools. 2. The conclusion of Mazerolle et al. (2006) is based on vagile aquatic invertebrates. Here, we question whether their conclusion can be extended to more sedentary species, which were not captured in the Canadian study, but made up an important part of the invertebrate assemblage in the Dutch study. This discrepancy could be caused by sampling artefacts, low colonisation rates of these species or an incomplete restoration of site conditions. 3. In Canada, chances of recolonisation may be higher than in the Netherlands, as natural and near‐natural bogs are more extensive. In the Netherlands, with low chances of recolonisation, persistence of species may be more important. To disentangle the relative importance of persistence and recolonisation, evaluations of the success of restoration projects need to cover the entire invertebrate assemblage, including both vagile and more sedentary species.     

Does Weeding Promote Regeneration of an Indigenous Tree Community in Felled Pine Plantations in Uganda?

The use of plantations to manage extensive tracks of deforested lands in the tropics is a conservation strategy that has recently received considerable attention. Plantation trees can promote seed dispersal by attracting dispersers and creating favorable site conditions, leading to increased germination and establishment of indigenous trees. Subsequently, plantation trees can be harvested for profit or left to senesce, leaving a native tree community. We evaluated the effect of vine, grass, and shrub cutting (weeding) over a 3‐year period on regeneration of indigenous trees subsequent to the removal of plantation softwoods in Kibale National Park, Uganda. Counter to what would be expected if weeding released trees from competition, we found no difference in the total number of stems or in the stems greater than 10 cm diameter at breast height between control and weeded plots; there were more stems greater than 1 cm diameter at breast height in the control plots. For species found in both control and weeded plots, the maximum size of individuals did not differ. At the end of the study, 61 species were found in the control plots and 43 species were found in the weeded plots, and in both types of plots the three most abundant species were the same. The number of species and stems classified as early or middle successional species did not differ between weeded and control plots. The fact that weeding did not promote regeneration of indigenous trees after the removal of plantation trees illustrates the importance of evaluating and field‐testing potential management options.