主成分分析法用于西洋参样品分类研究

建立西洋参药材分类方法;采用电感耦合等离子体质谱(ICP-MS)法对12个西洋参样品中的15种无机元素的含量进行测定,用高效液相色谱(HPLC)法测定上述样品中的7种人参皂苷的含量,用蒽酮-硫酸法测定其中多糖的含量;进而采用主成分分析法(PCA)对所测得的西洋参样品的23个变量进行分类研究;12个西洋参样品能得到合理的分类,而各人参皂苷的含量是决定西洋参样品分类的第1关键因素,元素Mn、Cu、As、Ni、Mo以及多糖的含量是第2关键因素;主成分分析法是西洋参分析分类的有效方法。     

稀土元素铕和钇对紫叶酢浆草试管苗生长的影响

在MS培养基中添加不同浓度的稀土元素铕(Eu)、钇(Y),研究Eu、Y对紫叶酢浆草试管苗生长的影响。结果表明,适宜浓度的Eu或Y能够促进紫叶酢浆草试管苗的生长和分化,但高浓度的Eu或Y则抑制紫叶酢浆草试管苗生长。     

Interaction between lanthanum ion and horseradish peroxidase in vitro

The interaction between lanthanum ion (La³⁺) and horseradish peroxidase (HRP) in vitro was investigated using a combination of biophysical and biochemical methods. When the molar ratio of La³⁺ and HRP is low, it was found that the interaction between La³⁺ and HRP mainly depends on the electrostatic attraction, van der waals force and hydrogen bond etc. Thus, the interaction is weak and the La–HRP complex cannot be formed in vitro. As expected, the interaction can change the conformation of HRP molecule, leading to the increase in the non-planarity of the porphyrin ring in the heme group of HRP molecule, and then in the exposure degree of the active center, Fe(III) of the porphyrin ring of HRP molecule. Therefore, the catalytic activity of HRP for the H₂O₂ reduction is improved. When the molar ratio of La³⁺ and HRP is high, La³⁺ can strongly coordinate with O and/or N in the amide group of the polypeptide chain of HRP molecule, forming the La–HRP complex. The formation of the La–HRP complex causes the change in the conformation of HRP molecule, leading to the decrease in the non-planarity of the porphyrin ring in the heme group of HRP molecule, and then in the exposure degree of the active center, Fe(III) of the porphyrin ring of HRP molecule. Thus, the catalytic activity of HRP for the H₂O₂ reduction is decreased comparing with that of HRP in the absence of La³⁺. The results can provide some references for understanding the interaction mechanism between trace elements ions and peroxidase in living organisms.     

Diversity and evolution of Pong-like elements in Bambusoideae subfamily

The PIF/IS5 is a recently discovered superfamily of DNA transposons which include Pong-like elements and PIF-like elements and has been successively detected in the genomes of many flowering plants, fungi and diverse animals. Here we present the first comprehensive characterization and analysis of Pong-like elements in Bambusoideae subfamily. Eighty-two Pong-like elements were cloned and sequenced from 44 representative species of Bambusoideae. Phylogenetic analysis of 82 distinct Pong-like elements sequences showed that Pong-like elements were widespread, diverse and abundant in Bambusoideae. A molecular phylogeny of Bambusoideae was established by using the internal transcribed spacer sequence of nuclear ribosomal DNA (ITS) information. The comparison between ITS and Pong-like elements based trees reveals obviously incongruent. The results suggest that 1) there are multiple Pong-like element families in Bambusoideae; 2) a single Pong-like element family could be present in multiple bamboo species; 3) Pong-like elements from the same family from different bamboo species could be more similar than elements from different families in the same bamboo species or closely related species.     

The development of PCR-based markers for molecular sex identification in the model insect species Tribolium castaneum

The red flour beetle, Tribolium castaneum (Herbst) (Coleoptera: Tenebrionidae), is a major pest of stored grain and cereal crops. It is also an important model species in genetic, ecological, and evolutionary research. The majority of its genome was recently sequenced and published. However, the genomic sequence of the small Y-chromosome is still undetermined, which hinders the development of molecular sex identification methods. Traditional methods for sexing adult forms of Tribolium beetles are troublesome. Therefore, a method for molecular sex identification in the red flour beetle was developed. One sex-linked randomly amplified polymorphic DNA marker was converted into a sequence-characterized amplified region (SCAR). The SCAR was aligned with the T. castaneum reference whole-genome sequence and fully matched a fragment of a single contig of unknown genomic location. The novelty of the method is that the fragment consists of shorter DNA fragments that are also present at other locations around the genome, but the particular order of these fragments within the sequenced region appeared to be Y-specific and this property was utilized for marker development. A set of three primers for multiplex PCR reaction was designed resulting in amplification of different length Y-specific and not-Y-specific (control) DNA fragments in a single PCR, which allows to distinguish males from females. The primers successfully sexed pre-sexed pupae and adult beetles from six laboratory strains, showing that the order of the repeated fragments is conserved in the species and is not strain-specific.     

Photoautotrophic nutrient utilization and limitation during semi‐continuous growth of Synechocystis sp. PCC6803

Microbial photosynthesis presents a valuable opportunity to capture abundant light energy to produce renewable bioenergy and biomaterials. To understand the factors that control the productivity of photosynthetic microorganisms, we conducted a series of semi‐continuous experiments using bench‐scale photobioreactor (PBR) systems, the cyanobacterium Synechocystis PCC6803 (PCC6803), and light conditions imitating actual day–night light irradiance (LI). Our results demonstrate that using normal BG‐11 medium resulted in severe phosphate (P_i) limitation for continuous operation. Mitigation of P_i‐limitation, by augmenting the P_i content of BG‐11, allowed higher biomass productivity; however, once P_i‐limitation was alleviated, limitation by inorganic carbon (C_i) or LI occurred. C_i‐limitation was detected by a low total C_i concentration (<5 mg C/L) and high and fluctuating pH. C_i‐limitation was relieved by delivering more CO₂, which led to a stable pH in the range of 7–9 and at least 5 mg/L of C_i in HCO. LI limitation, evidenced by an average LI <14 W/m² for PCC6803, was induced by a high biomass concentration of 1,300 mg/L. Thus, this work provides quantitative tools of stoichiometry and kinetics to evaluate limitation on PBRs. Biotechnol. Bioeng. 2010;106: 553–563. © 2010 Wiley Periodicals, Inc.     

The mitochondrial permeability transition from yeast to mammals

Regulated permeability changes have been detected in mitochondria across species. We review here their key features, with the goal of assessing whether a “permeability transition” similar to that observed in higher eukaryotes is present in other species. The recent discoveries (i) that treatment with cyclosporin A (CsA) unmasks an inhibitory site for inorganic phosphate (Pi) [Basso, E., Petronilli, V., Forte, M.A. and Bernardi, P. (2008) Phosphate is essential for inhibition of the mitochondrial permeability transition pore by cyclosporin A and by cyclophilin D ablation. J. Biol. Chem. 283, 26307-26311], the classical inhibitor of the permeability transition of yeast and (ii) that under proper experimental conditions a matrix Ca²⁺-dependence can be demonstrated in yeast as well [Yamada, A., Yamamoto, T., Yoshimura, Y., Gouda, S., Kawashima, S., Yamazaki, N., Yamashita, K., Kataoka, M., Nagata, T., Terada, H., Pfeiffer, D.R. and Shinohara Y. (2009) Ca²⁺-induced permeability transition can be observed even in yeast mitochondria under optimized experimental conditions. Biochim. Biophys. Acta 1787, 1486-1491] suggest that the mitochondrial permeability transition has been conserved during evolution.     

Structural and Biochemical Characterization of a Halophilic Archaeal Alkaline Phosphatase

Phosphate is an essential component of all cells that must be taken up from the environment. Prokaryotes commonly secrete alkaline phosphatases (APs) to recruit phosphate from organic compounds by hydrolysis. In this study, the AP from Halobacterium salinarum, an archaeon that lives in a saturated salt environment, has been functionally and structurally characterized. The core fold and the active-site architecture of the H. salinarum enzyme are similar to other AP structures. These generally form dimers composed of dominant β-sheet structures sandwiched by α-helices and have well-accessible active sites. The surface of the enzyme is predicted to be highly negatively charged, like other proteins of extreme halophiles. In addition to the conserved core, most APs contain a crown domain that strongly varies within species. In the H. salinarum AP, the crown domain is made of an acyl-carrier-protein-like fold. Different from other APs, it is not involved in dimer formation. We compare the archaeal AP with its bacterial and eukaryotic counterparts, and we focus on the role of crown domains in enhancing protein stability, regulating enzyme function, and guiding phosphoesters into the active-site funnel.