Information contents and dinucleotide compositions of plant intron sequences vary with evolutionary origin

The DNA sequence composition of 526 dicot and 345 monocot intron sequences have been characterized using computational methods. Splice site information content and bulk intron and exon dinucleotide composition were determined. Positions 4 and 5 of 5 splice sites contain different statistically significant levels of information in the two groups. Basal levels of information in introns are higher in dicots than in monocots. Two dinucleotide groups, WW (AA, AU, UA, UU) and SS (CC, CG, GC, GG) have significantly different frequencies in exons and introns of the two plant groups. These results suggest that the mechanisms of splice-site recognition and binding may differ between dicot and monocot plants.     

An ecological approach to biosystem thermodynamics

The general attributes of ecosystems are examined and a naturally occurring reference ecosystem is established, comparable with the isolated system of classical thermodynamics. Such an autonomous system with a stable, periodic input of energy is shown to assume certain structural characteristics that have an identifiable thermodynamic basis. Individual species tend to assume a state of least dissipation; this is most clearly evident in the dominant species (the species with the best integration of energy acquisition and conservation). It is concluded that ecosystem structure results from the antagonistic interaction of two nearly equal forces. These forces have their origin in the Principle of Most Action (least dissipation or least entropy production) and the universal Principle of Least Action. Most action is contingent on the equipartitioning of the energy available, through uniform interaction of similar individuals. The trend to Least action is contingent on increased dissipation attained through increasing diversity and increasing complexity. These principles exhibit a basic asymmetry. Given the operation of these opposing principles over evolutionary time, it is argued that ecosystems originated in the vicinity of thermodynamic equilibrium through the resonant amplification of reversible fluctuations. On account of the basic asymmetry the system was able to evolve away from thermodynamic equilibrium provided that it remained within the vicinity of ergodynamic equilibrium (equilibrium maintained by internal work, where the opposing forces are equal and opposite).At the highest level of generalization there appear to be three principles operating: i) maximum association of free-energy and materials; ii) energy conservation (deceleration of the energy flow) through symmetric interaction and increased homogeneity; and iii) the principle of least action which induces acceleration of the energy flow through asymmetrical interaction. The opposition and asymmetry of the two forces give rise to natural selection and evolution.     

On the fundamental nature of perception

The process of recognition or isolation of one or several entities from among many possible entities is termed intellego perception. It is shown that not only are many of our everyday percepts of this type, but perception of microscopic events using the methods of quantum mechanics are also intellego in nature. Information theory seems to be a natural language in which to express perceptual activity of this type. It is argued that the biological organism quantifies its sensations using an information theoretical measure. This, in turn, sets the stage for a mathematical theory of sensory perception.     

The assessment of two barley starch mutants as potential parents in a malting quality breeding programme

Grain and malt quality parameters were assessed in the barley starch mutants Waxy Hector, characterised by high levels of amylopectin, and Chalky Glenn, which has lines of cleavage across the large starch granules. Results were compared with those of their parental cultivars and suggested differences in the contribution of endosperm cell walls to milling energy. Although hot water extracts were not improved, other components, especially those associated with the fractured starch mutant, could be used in breeding programmes to improve aspects of quality, if they could be disassociated from deleterious effects of the starch mutation, e.g. poor grain filling.     

Information-theoretical entropy as a measure of sequence variability.

We propose the use of the information-theoretical entrophy, S = -sigman pi log2 pi, as a measure of variability at a given position in a set of aligned sequences. pi stands for the fraction of times the i-th type appears at a position. For protein sequences, the sum has up to 20 terms, for nucleotide sequences, up to 4 terms, and for codon sequences, up to 61 terms. We compare S and Vs, a related measure, in detail with Vk, the traditional measure of immunoglobulin sequence variability, both in the abstract and as applied to the immunoglobulins. We conclude that S has desirable mathematical properties that Vk lacks and has intuitive and statistical meanings that accord well with the notion of variability. We find that Vk and the S-based measures are highly correlated for the immunoglobulins. We show by analysis of sequence data and by means of a mathematical model that this correlation is due to a strong tendency for the frequency of occurrence of amino acid types at a given position to be log-linear. It is not known whether the immunoglobulins are typical or atypical of protein families in this regard, nor is the origin of the observed rank-frequency distribution obvious, although we discuss several possible etiologies.     

Water quality changes of the river Meuse assessed by chironomid pupal exuviae

The chironomid fauna of the river Meuse in Belgium and The Netherlands was studied in order to determine spatial water quality variations. Because the river Meuse serves as a source for drinking water production for about five million people in Belgium and The Netherlands, water quality is an essential factor to be studied. From 1984 till 1989 pupal exuviae were collected. Water quality was assessed by several indices and autecological information of the various taxa. With regard to pollution the general trend through the years was the same. The most upstream sampling site, in the Belgian Ardennes, was relatively unpolluted. As a result of untreated industrial and municipal wastewater discharges in the Liège region, water quality deteriorated dramatically at the Dutch border. At the most downstream sampling site, near the river mouth, a slight recovery was observed. Apart from organic and inorganic pollution other environmental factors such as flow velocity and the nature of the riverbed, also play a significant role in the occurrence of the organisms. It is concluded that protective measures need to be taken to restore the affected river ecosystem.The editors deeply regret to have to announce that Nicole Frantzen died in a train accident on 30 November 1992.     

The effect of trophic/contaminant interactions on chironomid community structure and succession (Diptera: Chironomidae)

The effects of contaminants and organic pollution on the chironomid communities of two basins in Lac St. Louis, a river-lake on the St. Lawrence River above Montreal, Quebec, were assessed and compared using lake classification theory techniques and morphological deformity indices based on the ligulae and antennae ofProcladius, the dominant surviving component of the south-shore communities. Contaminants from the industrial complex around Beauharnois, Quebec, have seriously degraded communities along the south-shore gradient while the introduction of untreated domestic wastes from Laprairie, Quebec, has seriously affected the communities of the Laprairie basin. The interaction between trophic and contaminant effects constitutes a classic example of the setback or deflection in the trajectory of ecological succession in biological communities hypothesized by ODUM (1981, 1985).     

The roles of temperature and food quality in affecting the performance of the alder aphid, Pterocallis alni

Six successive summer generations of the alder aphid (Pterocallis alni (DeGeer) (Homoptera: Callaphididae)) were reared simultaneously in the field and under controlled temperature conditions in the laboratory. The growth and reproduction of each generation were recorded. The available food quality for the aphids was measured by weekly analysis of foliar soluble nitrogen concentrations. Although there was a significant change in leaf soluble nitrogen during the season, the decline was only 23% and this did not appear to have an adverse effect on the performance of this aphid. Instead, the major environmental factor affecting the aphid is temperature. This is evidenced by the facts that when aphids were reared at constant temperatures, there were no differences in generation performance, even though food quality varied seasonally. In addition, all generations of the aphid posess the same number of ovarioles, indicating that there is no pre-programmed anticipation of a seasonal deterioration in food quality in this aphid species.

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Résumé P. alni DeGeer (Homopt. Callaphididae) vit sur Alnus glutinosa Gaertner pendant toute l'année. L'aulne étant un arbre fixant l'azote, cette étude a été entreprise pour examiner la croissance et la reproduction de ce puceron sur cet arbre afin d'expliquer les changements de la dynamique de sa population. 6 générations successives estivales ont été élevées dans la nature et en température constante au laboratoire. La qualité de l'aliment a été mesurée chaque semaine par une microkjeldahl analyse des concentrations foliaires en azote soluble. La qualité de l'aliment varie saisonnière, mais ne diminue que de 23%; elle semble n'avoir que peu d'effets sur le puceron, puisque la fécondité dans la nature n'est réduite que pendant une génération. Quand la température est maintenue constante, il n'y a pas de différences entre les performances des différentes générations de pucerons. Ainsi, les changements saisonniers dans la croissance et la reproduction des pucerons sont provoqués par la température et non par la qualité de l'aliment.

     

Critical,pupal and adult weights in the size related metamorphosis of the black lyre leafroller ‘Cnephasia’ jactatana

Adult reproductive performance is linked to the period of feeding done by the final instar larva after attainment of a larval critical weight (L_CW). The highest weight attained by a final instar larva is referred to as the larval maximum weight (L_MW) and is the onset of the pre-pupal period. The relationships between L_CW, pupal weight (P_W) and adult weight (A_W) are described as functions of the L_MW. In the leafroller Cnephasia jactatana (Walker) (Lepidoptera: Tortricidae) L_CW was dependent on larval size and was approximately 75% of the mean L_MW. L_CW was about 29 mg and 36 mg for male and female larvae of 1.18 mm and 1.20 mm head-capsule width, respectively. Over three successive generations of laboratory rearing, P_W was approximately 30% and 25% lower than the L_MW for males and females, respectively. A_W was consistently about 50% and 40% lower than the P_W for males and females, respectively. The decrease in weight from L_MW to P_W was named as the constant D_P and found to be 0.3 for males and 0.25 for females. The total decrease from L_MW to A_W was the constant D_A and was 0.6 for males and 0.5 for females. The duration of the latent feeding period was positively correlated to P_W and A_W. L_CW may be used to derive quality indices that describe and predict pupal and adult performance.

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Résumé Les performances reproductives sont liées à la période d'alimentation du dernier stade larvaire après l'obtention d'un poids critique (L_CW). Le poids maximal atteint au dernier stade larvaire est défini comme le poids larvaire maximal (L_MW), il correspond au début de la période prénymphale. Les relations entre poids de la chrysalide (P_W) et poids de l'audulte A_W) sont présentées comme des fonctions de L_MW). Chez Cnephasia jactatana Walker (Lep. Tortricidae), L_CW dépend de la taille de la chenille et correspond à environ 75% de la valeur moyenne de L_MW. L_CW est respectivement de 29 mg et 36 mg pour les chenilles mâles et femelles dont les capsules céphaliques ont 1,18 et 1,20 mm. Pour 3 générations successives, P_W est environ 30% et 25% inférieur à L_MW des mâles et des femelles. La régression du poids de L_MW à P_W est désignée comme la constante D_P et vaut 0,3 pour les mâles et 0,25 pour les femelles. La régression de L_MW à A_W est désignée comme la régression D_M et vaut 0,6 pour les mâles et 0,5 pour les femelles. La durée de la période d'alimentation latente est liée positivement à P_W et A_W. L_CW peut être utilisé comme indice dérivé décrivant et prédisant les potentialités nymphales et imaginales.

     

Kinetics of nitrogen and phosphorus release in varying food supplies byDaphnia magna

Rates of nitrogen and phosphorus release from individualDaphnia magna were determined by measuring ammonia and soluble reactive phosphorus in successive 10-min incubations in small (0.05 ml) vessels after the animals were removed from their food. Release rates of both nutrients were generally highest initially and decreased with time after removal. The ratio of nitrogen to phosphorus released increased with time after animals were removed from an artificial detritus/bacterial food; ratios were lower and changed with time less for animals fed algae. These data suggest errors may be introduced by assumptions of constant stoichiometry for nutrient release in varying environments.GLERL Contribution No. 268