SURF4-induced tubular ERGIC selectively expedites ER-to-Golgi transport

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Increased landscape heterogeneity supports the conservation of European rollers (Coracias garrulus) in southern Hungary

European rollers (Coracias garrulus) were almost extinct from large parts of Hungary in the 1970–1980s. However up till now their population size increased considerably, mainly due to a nature conservation campaign, supplying artificial nest-boxes for breeding. We studied which factors affected rollers’ occurrences at the landscape scale in southern Hungary, under natural circumstances and when artificial nest-boxes were supplied. We analyzed the composition and the configuration of the landscape at two spatial scales. We found that beside the presence of natural grasslands, heterogeneous landscape provided high quality breeding and hunting sites favorable for rollers. Even though habitat characteristics of roller territories with natural holes or nest-boxes were similar, breeding sites without artificial nest-boxes harbored higher coverage of forests and heterogeneous agricultural areas. Sites with occupied and unoccupied nest-boxes considerably overlapped, suggesting that the available habitats were not saturated. Nest-box supplementation proved to be an effective tool for rollers’ conservation in areas where natural nesting sites were limited, but prey resources were available. Consequently, the preservation of landscape heterogeneity is a key factor which should be taken into consideration in the conservation management of roller populations.     

Triadic Positions of Tibetan Macaques Huddling at a Sleeping Site

We studied huddling of Tibetan macaques (Macaca thibetana) at a sleeping site in Huangshan, China, during the mating and birth seasons. Tibetan macaques in a free-ranging group made physical contact with each other and formed huddling groups on the ledge of a steep cliff at night. We analyzed the size and composition of huddling groups and the frequencies of dyadic huddles—two individuals in physical contact—in the huddling group to determine the social influences on huddling behavior. Affiliated dyads that frequently groomed in the daytime frequently formed dyadic huddles in night-time huddling groups. Female–male dyads formed dyadic huddles less frequently than expected. In addition, Tibetan macaques chose 2 partners with which they initiated contact when they approached a huddling group. The frequencies with which some combinations of 3 individuals contacted each other and formed triangular huddles are not consistent with the expected frequencies. For example, female–male–male triads frequently formed triangular huddles in the birth season but did so infrequently in the mating season because of male competition for estrous females. When all 3 dyads within a certain triad formed dyadic huddles frequently, the triad was more likely to form a triangular huddle. The choices of approaching individuals might make a systematic, rather than random, positioning of individuals in huddling groups at their sleeping site.     

The plant Golgi apparatus: Last 10 years of answered and open questions

Plant Golgi bodies possess unique morphological and functional characteristics that are key to several biological and biotechnological processes, such as transport of the cell’s building blocks to energy-rich compartments, including chloroplasts, storage vacuoles and a cellulosic cell wall. During the last decade it has become apparent that the plant Golgi apparatus has features that are remarkably different from other systems. Here we summarize the most recent findings on this organelle and we highlight pressing questions that are likely to drive the next 10 years of research on the plant Golgi apparatus.     

The piggyBac-derived protein 5 (PGBD5) transposes both the closely and the distantly related piggyBac-like elements Tcr-pble and Ifp2

The vertebrate piggyBac derived transposase 5 (PGBD5) encodes a domesticated transposase, which is active and able to transpose its distantly related piggyBac-like element (pble), Ifp2. This raised the question whether PGBD5 would be more effective at mobilizing a phylogenetically closely related pble element. We aimed to identify the pble most closely related to the pgbd5 gene. We updated the landscape of vertebrate pgbd genes to develop efficient filters and identify the most closely related pble to each of these genes. We found that Tcr-pble is phylogenetically the closest pble to the pgbd5 gene. Furthermore, we evaluated the capacity of two murine and human PGBD5 isoforms, Mm523 and Hs524, to transpose both Tcr-pble and Ifp2 elements. We found that both pbles could be transposed by Mm523 with similar efficiency. However, integrations of both pbles occurred through both proper transposition and improper PGBD5-dependent recombination. This suggested that the ability of PGBD5 to bind both pbles may not be based on the primary sequence of element ends, but may involve recognition of inner DNA motifs, possibly related to palindromic repeats. In agreement with this hypothesis, we identified internal palindromic repeats near the end of 24 pble sequences, which display distinct sequences.     

A Quick,Onsite Test for Delineating Arsenic Contaminant Plumes in Soil

Dipping vats were used routinely in the southeastern U.S. in the early 1900s to eradicate the cattle fever tick. The legacy is many dip vat sites with arsenic (As)-contaminated soil and ground water. Assessing the extent of these As plumes can be time consuming and expensive. We describe a quicker and less expensive, onsite test for soil As. It is a modification of a commercially available test designed for As in water, taking about 10?min to complete, allowing large plume areas to be delineated in a single day. An As contaminant plume in Alachua County, FL, was delineated using the quick test. Soil samples taken from a large grid encompassing the plume were analyzed in the laboratory for As to confirm the results obtained with the quick test. The comparison showed that the quick test very accurately delineated the outer boundary of the plume as well as zones of higher As concentration within the plume.     

Requirement of the Pro-Cys-His-Arg sequence for O6-methylguanine-DNA methyltransferase activity revealed by saturation mutagenesis with negative and positive screening

O⁶-Methylguanine-DNA methyltransferase catalyzes transfer of a methyl group from O⁶-methylguanine and O⁴-methylthymine of DNA to a cysteine residue of the enzyme protein, thereby repairing the mutagenic and carcinogenic lesions in a single-step reaction. There are highly conserved amino acid sequences around the methyl-accepting cysteine site in eleven molecular species of methyltransferases. To elucidate the significance of the conserved sequence, amino acid substitutions were introduced by site-directed mutagenesis of the cloned DNA for Escherichia coli Ogt methyltransferase, and the activity and stability of mutant forms of the enzyme were examined. When cysteine-139, to which methyl transfer occurs, was replaced by other amino acids, all of the mutants showed the methyltransferase-negative phenotype. Methyltransferase-positive revertants, isolated from one of the negative mutants, had restored codons for cysteine. Thus the cysteine residue is essential for acceptance of the methyl group and is not replaceable by other amino acids. Using this negative and positive selection procedure, the analysis was extended to other residues near the acceptor site. At the histidine-140 and arginine-141 sites, all the positive revertants isolated carried codons for amino acids identical to those of the wild-type protein. At proline-138, five substitutions (serine, glutamine, threonine, histidine, and alanine) exhibited the positive phenotype but levels of methyltransferase activity in extracts of cells harboring these mutant forms were very low. This suggests that the proline residue at this site is important for maintaining the proper conformation of the protein. With valine-142 substitutions there were seven types of positive revertants, among which mutants carrying isoleucine, cysteine, leucine, and alanine showed relatively high levels of methyltransferase activity. These results indicate that the sequence Pro-Cys-His-Arg is a sine qua non for methyltransferase to exert its function.     

Protection by Alcuronium of Muscarinic Receptors Against Chemical Inactivation and Location of the Allosteric Binding Site for Alcuronium

Abstract: We have found earlier that the neuromuscular blocker alcuronium binds to cardiac muscarinic receptors simultaneously with their specific antagonist [³H]methyl- N -scopolamine ([³H]NMS) and allosterically increases their affinity to this ligand. Nothing is known about the allosteric site with which alcuronium interacts. To gain an insight, we have now investigated how the binding of [³H]NMS is affected by agents known to modify specific residues in proteins and how their effects are altered by alcuronium. Reagents that covalently modify the tyrosyl residues ( p -nitrobenzenesulfonyl fluoride and 4-chloro-7-nitrobenzofurazan) and the carboxyl groups of aspartate and glutamate [1-ethyl-3-(3-dimethylaminopropyl)carbodiimide, N,N' -dicyclohexylcarbodiimide, and N -ethyl-5-phenylisoxazolium-3'-sulfonate] blocked the binding of [³H]NMS to receptors in rat heart atria. Their action was probably due to the modification of tyrosyl and aspartyl residues directly in the muscarinic binding sites because it was antagonized by atropine and carbamoylcholine. Alcuronium and gallamine, another allosteric ligand, also protected the [³H]NMS binding sites against the inactivation by tyrosine- and carboxyl-directed chemical modifiers just as well as by benzilylcholine mustard, known to attach covalently to the muscarinic binding sites. Protection by alcuronium has also been observed on cerebrocortical muscarinic receptors. The effect of alcuronium indicates that the drug interferes with the access of chemical modifiers to the muscarinic sites. In view of the unspecific nature of most of the modifiers used (with regard to muscarinic mechanisms), the protection by alcuronium appears to be best explained on the assumption that the drug binds in close vicinity of the "classical" muscarinic site and sterically blocks the access to this site.     

Structure-based design and application of an engineered glutathione transferase for the development of an optical biosensor for pesticides determination

In the present work, a structure-based design approach was used for the generation of a novel variant of synthetic glutathione transferase (PvGmGSTU) with higher sensitivity towards pesticides. Molecular modelling studies revealed Phe117 as a key residue that contributes to the formation of the hydrophobic binding site (H-site) and modulates the affinity of the enzyme towards xenobiotic compounds. Site-saturation mutagenesis of position Phe117 created a library of PvGmGSTU variants with altered kinetic and binding properties. Screening of the library against twenty-five different pesticides, showed that the mutant enzyme Phe117Ile displays 3-fold higher catalytic efficiency and exhibits increased affinity towards α-endosulfan, compared to the wild-type enzyme. Based on these catalytic features the mutant enzyme Phe117Ile was explored for the development of an optical biosensor for α-endosulfan. The enzyme was entrapped in alkosixylane sol-gel system in the presence of two pH indicators (bromocresol purple and phenol red). The sensing signal was based on the inhibition of the sol-gel entrapped GST, with subsequent decrease of released [H⁺] by the catalytic reaction, measured by sol–gel entrapped indicators. The assay response at 562?nm was linear in the range pH?=?4–7. Linear calibration curves were obtained for α-endosulfan in the range of 0–30?μΜ. The reproducibility of the assay response, expressed by relative standard deviation, was in the order of 4.1% (N?=?28). The method was successfully applied to the determination of α-endosulfan in real water samples without sample preparation steps.     

Characterization and expression of the pepN gene encoding a general aminopeptidase from Lactobacillus helveticus

Abstract The putative ribosome binding sites preceding 32 of Lactobacillus delbrueckii subsp. lactis bacteriophage LL-H genes were compared. A highly conserved consensus sequence for the ribosome binding sites of LL-H genes was inferred, GAAAGGAG. This study included the characterization of the last nucleotides of the 3'-end of the 16S rRNA molecule from L. delbrueckii subsp. lactis and its comparison to the ribosome binding site consensus sequence.