Effects of environmental variables on fish feeding ecology: implications for the performance of baited fishing gear and stock assessment

The effectiveness of baited fishing gear ultimately depends upon behaviour of the target species – activity rhythms, feeding motivation, and sensory and locomotory abilities. While any environmental parameter that mediates feeding or locomotion can have an important influence on the active space presented by the bait and fish catchability, few biologists have considered how such variation in behaviour might affect catch per unit effort (CPUE) and the resultant stock abundance estimates or population parameters. This review reveals that environment‐related variation in feeding behaviour can act through four different mechanisms: metabolic processes, sensory limitations, social interactions and direct impacts. Water temperature, light level, current velocity and ambient prey density are likely to have largest effects on fish catchability, potentially affecting variation in CPUE by a factor of ten. Feeding behaviour is also density‐dependent, with both positive and negative effects. Over time and geographic space a target species can occupy wide ranges of environmental conditions, and in certain cases, spatial and temporal variation in feeding biology could have a larger impact on CPUE than patterns of abundance. Temperature, light and current can be measured with relative facility and corrections to stock assessment models are feasible. Making corrections for biological variables such as prey density and bait competitors will be more difficult because the measurements are often not practical and relationships to feeding catchability are more complex and poorly understood. There is a critical need for greater understanding of how environmental variables affect feeding‐related performance of baited fishing gear. A combination of field observations and laboratory experiments will be necessary to parameterize stock assessment models that are improved to accommodate variation in fish behaviour. Otherwise, survey data could reveal more about variation in behaviour than abundance trends.     

Recovery plan for an exploited species, southern bluefin tuna

Southern bluefin tuna (SBT) were heavily depleted in the mid-1980s, and the fishing quota has been restricted since 1985. As a result of this restriction and protection of immature individuals, spawning stock biomass (SSB) recently has shown a slight increase. The Commission for the Conservation of Southern Bluefin Tuna (CCSBT) has the target of recovering SSB to the 1980 level by 2020. We investigated whether SBT populations will recover and reach the target level set by CCSBT. Our projection shows that the SSB of the SBT will temporarily decrease again after 1999. This temporary decrease of SSB does not always mean failure of the recovery plan, because the SSB trend is highly vulnerable to age-composition dynamics. The SBT is an example of this. The number of mature SBT was small during the 1980s because of overfishing. Thus, the number of eggs that were spawned by these mature SBT was small in these years, and when these small numbers of immature fish become mature, the SSB will decrease again. We call this effect the inverse baby-boom effect. The inverse baby-boom effect may be common for managed bioresources that have once been overexploited. We also examine the use of spawning potential (SP) and SSB as an index of stock recovery. Received: August 17, 2000 / Accepted: March 19, 2001     

Microsatellite DNA variation in Atlantic sturgeon (Acipenser oxyrinchus oxyrinchus) and cross-species amplification in the Acipenseridae

Overharvest and habitat alteration have led toa collapse of most commercial Atlantic sturgeon(Acipenser oxyrinchus oxyrinchus)fisheries while pushing the species to rarityor extirpation in most of its historical range. A biologically sound conservation program forthis species requires knowledge of its geneticdiversity and of the evolutionary relationshipsamong geographic populations. To address theseresearch needs, six microsatellite loci wereisolated from A. o. oxyrinchus. Pedigreeanalysis suggested that all are inherited in acodominant Mendelian pattern. The six lociwere tested in ten additional sturgeon speciesfrom three genera and three apparent ploidylevels (4n, 8n, 16n). Approximately 70% ofsuccessful locus-species amplifications werepolymorphic. Polysomy was observed most oftenin 8n and 16n species. Genetic diversity andpopulation structure of A. o. oxyrinchuswere assayed using three polymorphic Aoxmarkers and four markers developed from lakesturgeon (A. fulvescens). A. o.oxyrinchus were sampled from the AltamahaRiver, Georgia, USA north to the St. LawrenceRiver, Quebec, Canada. Gulf sturgeon, A.o. desotoi, were sampled from the SuwanneeRiver, Florida, USA, to assess differentiationbetween the subspecies. Seventy-seven alleleswere observed to segregate into uniquemultilocus genotypes for each of the 392individuals assayed. Mean diversity wasgreatest in the Chesapeake Bay (9.7 alleles perlocus) and Delaware River (7.4 alleles perlocus) collections, and lowest in the St.Lawrence River (4.6 alleles per locus). Meanheterozygosity across seven loci ranged from44.3% (St. Lawrence River) to 62.6% (Altamaha River). Significant allelic heterogeneity wasobserved in 82% of pairwise comparisons aswell as a global test (p < 0.0001) for A.o. oxyrinchus collections. Genetic distancesuggests the presence of at least sixsubpopulations in A. o. oxyrinchus: St.Lawrence River, St. John River, Hudson River,Delaware River, Albemarle Sound, and AltamahaRiver. Genetic and geographic distances werepositively correlated (r = 0.57, p < 0.03) amongA. o. oxyrinchus, suggesting isolation bydistance and philopatry. Hierarchical genediversity analysis indicated significantgenetic population structure at every level. Maximum likelihood assignment tests correctlyassigned individual fish to collection with ahigh rate of success (mean = 87.5%); this andother lines of evidence indicated that theChesapeake Bay collection represents a mixedpopulation of sub-adult sturgeon from northernand southern Atlantic coast populations. Population structure was correlated with thatsuggested by earlier mitochondrial (mt) DNAanalyses. Significant diversity was observedbetween two Canadian populations from whichonly a single mtDNA haplotype has beenreported.     

Steemann Nielsen and the zooplankton

E. Steemann Nielsen is remembered by most biological oceanographers and limnologists as having introduced the ¹⁴C method for measuring photosynthesis in 1952. The present paper is to recall that he was interested in the phytoplankton as part of the plankton community and was much aware of the role of grazing in affecting, if not determining, the concentrations of phytoplankton and, thus, also its rate of production. His principal statements to this effect were made with the open, oligotrophic subtropical and tropical oceans in mind where phytoplankton concentrations exhibit little seasonal change. This paper shows that Steemann Nielsen's sentiment also applies to non-static situations, especially phytoplankton blooms. Of the blooms in Cushing's North Sea Calanus patches of 1949 and 1954 and the two low-latitude, open-sea iron fertilization experiments (IronEx I, II) of the 1990s, more than half or even most of the newly formed cells were lost daily. In these examples, the same water was revisited, mixing was considered, and sinking was an unimportant loss term, so that grazing was the principal cause of mortality. Because of the grazing losses and the subsequent regeneration the CO₂ draw down in the fertilized water was much lower than the ¹⁴C uptake. Moreover the examples show that over the course of the blooms, the rate and even the sign of temporal change of phytoplankton abundance had little relation to the rate of cell division, as already postulated by Riley's 1946 model of the seasonal cycle of phytoplankton on Georges Bank. Thus, in most situations in the open sea and, presumably, large lakes, the rates of cell division (instead of photosynthesis by itself) and of mortality (most often from grazing) are needed for understanding and predicting the temporal change of phytoplankton abundance, a principal goal of biological oceanography. The mechanism maintaining the actual abundance of phytoplankton in the quasi-steady state prevailing over most of the ocean much of the time is still unclear.     

Genetic stock structure of bigeye tuna in the Indian Ocean using mitochondrial DNA and microsatellites

Genetic differentiation was minimal and overall non-significant among five collections of bigeye tuna Thunnus obesus from the Indian Ocean, examined for variation at mitochondrial DNA (mtDNA) and at seven microsatellite loci.     

巴西蘑菇原种培养基的筛选

以麦草、稻草、棉籽壳、玉米秸、木屑、麦粒、玉米粒和麦麸为原料 ,从 2 0种培养基中筛选出 2种适合巴西蘑菇菌丝生长的原种培养基。用这 2种培养基生产的菌种 ,菌丝粗壮、洁白、浓密 ,萌发快。     

A new method for the preservation of fungus stock cultures by deep-freezing

Recovery of 66 fungus stock cultures including Oomycota, Zygomycota, Ascomycota, Basidiomycota, and mitosporic mycetes were examined after cryopreservation. Almost all the stock cultures remained viable when the mycelia that had grown over the sawdust medium containing 10% glycerol as the cryoprotectant (65% moisture content, W/W) were frozen rapidly at −85°C and then allow to thaw naturally at room temperature. Test stock cultures were preserved for more than 10 years by this preservation method without any programmed precooling and rapid thawing for their cryopreservation. Most of the test fungi could survive for 5 years in medium containing 10% glycerol even after alternate freezing and thawing at intervals of 6 months. When a strain of Flammulina velutipes was tested for mycelial growth rate and productivity of fruit-bodies after cryopreservation for 3 years, the fungus reproduced with its initial capability. These results demonstrate that the sawdust-freezing method using a cryoprotectant is expected to be a reliable and easy preservation method for fungus stock cultures. Received: December 7, 2000 / Accepted: December 19, 2001     

Growth and carbon stock change in eucalypt woodlands in northeast Australia: ecological and greenhouse sink implications

Data from 57 permanent monitoring sites are used to document the growth in woody vegetation and estimate the carbon sink in 27 M ha of eucalypt woodlands (savannas), contained within c. 60 M ha of grazed woodlands in Queensland (northeast Australia). The study sites are shown to be representative of the environment and structure of the eucalypt woodlands in the defined study area. Mean basal area increment for all live woody plants in 30 long‐term sites, with an average initial basal area of 11.86 ± 1.38 (SE) m² ha^?1, was 1.06 m² ha^?1 over a mean 14 years timeframe. The majority of the measurement period, commencing between 1982 and 1988, was characterized by below‐average rainfall. The increase in live tree basal area was due primarily to growth of existing trees (3.12 m² ha^?1) rather than establishment of new plants (0.25 m² ha^?1) and was partly offset by death (2.31 m² ha^?1). A simple but robust relationship between stand basal area and stand biomass of all woody species was developed for the eucalypt dominant woodlands. Analysis of above‐ground carbon stocks in live and standing dead woody plants gave a mean net above‐ground annual carbon increment for all 57 sites of 0.53 t C ha^?1 y^?1, similar to values estimated elsewhere in world savannas. Published root : shoot ratios were used to infer C flux in woody root systems on these sites. This results in an estimated sink in above‐ and below‐ground biomass of 18 Mt C y^?1 over the eucalypt woodlands studied, and potentially up to 35 Mt C y^?1 if extended to all grazed woodlands in Queensland. It is suggested that introduction of livestock grazing and altered fire regimes have triggered the change in tree‐grass dominance in these woodlands. Thus, change in carbon stocks in the grazed woodlands of Queensland is identified as an important component of human‐induced greenhouse gas flux in Australia, equivalent in magnitude to c. 25% of the most recently published (1999) total estimated national net emissions. The latter inventory takes into account emissions from land clearing, but does not include the sink identified in the present study. This sequestration also represents a small but significant contribution to the global terrestrial carbon sink.     

State-space modeling clarifies productivity regime shifts of Japanese flying squid

Regime shifts of climatic and environmental conditions potentially affect the productivity of fishery resources, posing challenges in stock management. The stocks of the Japanese flying squid (Todarodes pacificus) are suspected to suffer from regime shifts, but detecting the occurrence of regime shifts in this species is generally difficult and unreliable because the short-lived nature of this species inherently confounds the effect of regime shifts with observation and process errors. Here we developed a new state-space assessment model to evaluate the influence of regime shifts on the spawner-recruit relationship of the Japanese flying squid. The model simultaneously estimates the population dynamics of multiple stocks that could share some life history parameters, thereby stabilizing parameter inference. We demonstrate that two regime shifts in productivity around 1991 and 2015 caused two- to threefold changes of maximum sustainable yields. The model with regime shifts clarifies the relationship between fishing pressure and spawner abundance that is difficult to detect in a model with no regime shift. The state-space approach is a promising tool for accurately assessing stock status by separating the recruitment process from observation errors and is expected to contribute to the effective management of marine biological resources sensitive to regime shifts.     

DEVELOPMENT OF PROTOPLASTS FROM HOLDFASTS AND VEGETATIVE THALLI OF MONOSTROMA LATISSIMUM (CHLOROPHYTA, MONOSTROMATACAE) FOR ALGAL SEED STOCK

The aim of this study was to isolate and cultivate the protoplasts of the green alga Monostroma latissimum Wittrock and subsequently induce them to form algal filaments to act as an algal "seed" stock. Protoplasts of the alga were isolated enzymatically with 4% cellulase Onozuka R-10 and 2% Macerozyme R-10. The highest number of protoplasts was obtained on a 50-rpm shaker with 1.2 M of sorbitol after 6 h of incubation, with a yield of 9 × 106 protoplasts·g−1 of fresh thallus (including holdfast). Protoplasts from both holdfasts and erect thalli usually began to form new cell walls within 5 h after isolation and began to divide from day 6 to day 9 in PES medium; cell clusters, filaments, and/or tubular thalli were formed from day 14 to day 18. For algae collected in March, about 60% of protoplasts isolated from vegetative thalli regenerated to form tubular thalli, and about 45% of protoplasts isolated from holdfasts regenerated to form filaments. However, for algae collected in May, about 1% of protoplasts isolated from vegetative thalli developed directly to form tubular thalli, and 59% of protoplasts regenerated to form cell clusters without the ability to differentiate, whereas protoplasts isolated from holdfasts failed to develop. Regenerated filaments were kept in an incubator for more than 3 years at 24° C under the low irradiance of 66μmol photons·m−2·s−1. After this time, they retained the ability to develop to form tubular thalli under irradiance of 166 and 300 μmol photons·m−2·s−1 at 18°–30° C. Subsequently, these tubular thalli can develop to form leafy thalli after being cultivated at high irradiance of 300 μmol photons·m−2·s−1 and at 18°–22° C. Therefore, the filaments could serve as"seed" stock for algal mass culture.