Metagenomic insights into microbial metabolism affecting arsenic dispersion in Mediterranean marine sediments

Microorganisms dwelling in sediments have a crucial role in biogeochemical cycles and are expected to have a strong influence on the cycle of arsenic, a metalloid responsible for severe water pollution and presenting major health risks for human populations. We present here a metagenomic study of the sediment from two harbours on the Mediterranean French coast, l'Estaque and St Mandrier. The first site is highly polluted with arsenic and heavy metals, while the arsenic concentration in the second site is below toxicity levels. The goal of this study was to elucidate the potential impact of the microbial community on the chemical parameters observed in complementary geochemical studies performed on the same sites. The metagenomic sequences, along with those from four publicly available metagenomes used as control data sets, were analysed with the RAMMCAP workflow. The resulting functional profiles were compared to determine the over‐represented Gene Ontology categories in the metagenomes of interest. Categories related to arsenic resistance and dissimilatory sulphate reduction were over‐represented in l'Estaque. More importantly, despite very similar profiles, the identification of specific sequence markers for sulphate‐reducing bacteria and sulphur‐oxidizing bacteria showed that sulphate reduction was significantly more associated with l'Estaque than with St Mandrier. We propose that biotic sulphate reduction, arsenate reduction and fermentation may together explain the higher mobility of arsenic observed in l'Estaque in previous physico‐chemical studies of this site. This study also demonstrates that it is possible to draw sound conclusions from comparing complex and similar unassembled metagenomes at the functional level, even with very low sequence coverage.     

An experimental investigation into the effects of traffic noise on distributions of birds: avoiding the phantom road

Many authors have suggested that the negative effects of roads on animals are largely owing to traffic noise. Although suggestive, most past studies of the effects of road noise on wildlife were conducted in the presence of the other confounding effects of roads, such as visual disturbance, collisions and chemical pollution among others. We present, to our knowledge, the first study to experimentally apply traffic noise to a roadless area at a landscape scale—thus avoiding the other confounding aspects of roads present in past studies. We replicated the sound of a roadway at intervals—alternating 4 days of noise on with 4 days off—during the autumn migratory period using a 0.5 km array of speakers within an established stopover site in southern Idaho. We conducted daily bird surveys along our ‘Phantom Road’ and in a nearby control site. We document over a one-quarter decline in bird abundance and almost complete avoidance by some species between noise-on and noise-off periods along the phantom road and no such effects at control sites—suggesting that traffic noise is a major driver of effects of roads on populations of animals.     

农业土壤中邻苯二甲酸酯污染研究进展

由邻苯二甲酸酯(PAEs)引起的环境污染和食品安全问题已经引起全球性关注.我国既是邻苯二甲酸酯生产大国,又是消费大国,其环境污染问题不容忽视.本文综述了美国国家环保署所列出的6种优先控制PAEs污染物在我国农田土壤中的污染现状,分析了其来源,重点阐述了不同类型农作物对PAEs化合物的吸收累积特征及PAEs类污染物的生物毒害效应.我国多数地区农业土壤中PAEs的含量显著高于美国和欧洲等国家.大气沉降、农用薄膜、施用污泥和污水灌溉是我国农业土壤中PAEs的主要来源.不同作物对PAEs的吸收、累积和分配特征具有显著的差异性.PAEs不但影响土壤质量、作物生长和生理生化性质,而且具有生物累积效应.最后指出了当前研究中的不足及对今后研究的展望,建议扩大PAEs污染调查范围,深入揭示PAEs对农作物的毒害机理,重点研发PAEs污染土壤的原位修复技术.     

Biomonitoring of heavy metals in the coastal waters of two industrialised bays in southern Spain using the barnacle Balanus amphitrite

Abstract

This paper evaluates the bioavailability of As, Cd, Cu, Mn, Hg, Ni and Zn in the coastal waters of the two most important bays in southern Spain (Cádiz and Algeciras). Concentrations of these metals were measured in the bodies of Balanus amphitrite barnacles in 2005 and 2006. Seawater samples were collected from the same sites as the barnacles to assess metal concentrations and to gain additional information on the environmental conditions. Analysis of variance (ANOVA) showed significant geographic differences in the local bioavailability of metals to the barnacles, as reflected in the concentrations of accumulated metals. Balanus amphitrite accumulates large amounts of metals, with high concentration factors for Zn, Cd, Cu and Mn, in relation to the concentrations in marine waters.     

Shedding light on moths: shorter wavelengths attract noctuids more than geometrids

With moth declines reported across Europe, and parallel changes in the amount and spectra of street lighting, it is important to understand exactly how artificial lights affect moth populations. We therefore compared the relative attractiveness of shorter wavelength (SW) and longer wavelength (LW) lighting to macromoths. SW light attracted significantly more individuals and species of moth, either when used alone or in competition with LW lighting. We also found striking differences in the relative attractiveness of different wavelengths to different moth groups. SW lighting attracted significantly more Noctuidae than LW, whereas both wavelengths were equally attractive to Geometridae. Understanding the extent to which different groups of moth are attracted to different wavelengths of light will be useful in determining the impact of artificial light on moth populations.     

Impacts of cage culture on physico-chemical and bacteriological water quality in Lake Volta,Ghana

The effects of cage fish farming on physico-chemical and bacteriological water quality in Lake Volta, Ghana, were investigated in 2013–2014. Farmed and unfarmed (control) areas of the lake were selected for monitoring. Nutrients, temperature, dissolved oxygen, conductivity, turbidity, pH, total coliforms, Pseudomonas and Vibrio spp. in the water were monitored monthly. Analyses of the water samples were carried out according to standard procedures. Physico-chemical quality of the water in both farm and control sites were within ranges typical of minimally impacted water and did not vary significantly between the two contrasting sites. The bacteriological analysis, however, revealed contamination of the lake water by fish farming. The bacterial counts at the farmed sites were significantly higher (p < 0.05) than those of the control sites, with figures at the farmed sites ranging from 132 to 1 708 cfu 100 ml?1 for total coliforms, 514 to 5 170 cfu 100 ml?1 Pseudomonas spp. and 14 to 516 cfu 100 ml?1 for Vibrio spp. The results suggested that cage fish farming has increased bacterial loads in the lake water, but has had minimal impact on its physico-chemical quality.     

Water quality and phytoplankton community structure in mangrove streams under different logging regimes in Cameroon

Mangrove logging is rampant, and its effects on phytoplankton dynamics have not been investigated. Phytoplankton are valuable in biomonitoring pollution in mangrove ecosystems. This study assessed the relationship between physico‐chemical characteristics of the water and observed phytoplankton community structure, in relation to anthropogenic activities. Water samples were collected from seven sites within the mangrove ecosystem that differed in wood harvesting age and proximity to human settlements. Characterization of samples followed standard methods. pH of all water samples indicated acidity. Phytoplankton species richness and soluble P were positively correlated (r = 0.822, P ≤ 0.023), but no correlations existed with logging age (r = ?0.273, P = 0553). The site with highest soluble phosphorus concentration (Site 4) had highest phytoplankton abundance, diversity and richness. A total of 127 species were identified in 58 families. Euglenaceae was the most abundant family (13 species) and Anacystis sp. the most frequent species (100%). The most common genera were Microcystis and Anacystis, bioindicators of pollution. The site at which harvesting was most recently performed had more eutrophic species, while site harvested earliest (Site 5) had the least. These results are discussed with respect to how anthropogenic activities influence water quality, phytoplankton community structure, mangrove conservation and management.     

Magnetic properties of Tillandsia recurvata L. and its use for biomonitoring a Mexican metropolitan area

Some epiphytic species accumulate airborne particles and are suitable biological indicators for monitoring urban and industrial pollution. The species Tillandsia recurvata L. was studied as a monitor of air pollution in an urban area from Mexico. Individuals were collected in 25 sites which are exposed to different pollution degree and sources.The magnetic particle concentration, particle size, and mineralogy were determined and compared with chemical contents for all samples. The highest values of magnetic concentration dependent parameters were observed in industrial and heavy traffic sites (e.g., mass specific magnetic susceptibility of up to 171.5 × 10⁻⁸ m³ kg⁻¹). In contrast, sites with low or without vehicular traffic reached low values (e.g., mass specific magnetic susceptibility of down to 1.8 × 10⁻⁸ m³ kg⁻¹). The integrated magnetic analysis (King's and Day's plots, remanent magnetization parameters and thermomagnetic measurements) revealed the presence of ferromagnetic minerals, mostly magnetite-like with fine grain sizes (0.1–1 μm) and subordinate presence of high-coercivity minerals. Selected samples were observed by SEM and EDS analysis and revealed the presence of Fe-rich particles, as well as trace elements, among others, As, Sb, S, Cr, Mo, V, Zn, Ba, Hg, Pt and Cu. Most of the elements detected by EDS were also quantified by ICP-MS measurements.Multivariate statistical analyses prove a high correlation between magnetic parameters and elements, as well as allow us classifying sites in clusters (fuzzy c-means clustering) with different pollution degree. These results demonstrate the usefulness of the species T. recurvata L. as a passive pollution monitor, with an affordable and immediate application. This species is abundant not only in Mexico, but also in other cities from America.     

Enhanced Immobilization of Cr(VI) in Soils by the Amendment of Rice Straw Char

This study investigated the effect of rice straw char (RSC) on the immobilization of Cr(VI) in soils. The Cr(VI) sorption experiments on the RSC and RSC-amended soils were conducted using the batch method. RSC exhibited Cr(VI) reduction capacity due to its black carbon content. The addition of RSC to the soils enhanced the overall Cr(VI) immobilization of the soils, which is primarily attributed to the Cr(VI) reduction capacity of RSC. The effects of RSC amendment on the Cr(VI) sorption of the soils increased with increasing RSC content in the soils and decreased with increasing pH or anion contents in the soil solutions. After Cr(VI) was sorbed by the soils, a portion of the Cr(VI) was converted to Cr(III) and the remainder was sorbed onto the soils. The presence of RSC in the soils decreased the portion of sorbed Cr(VI) in the soils and therefore lowered the potential remobilization of Cr(VI) from the soils. The results suggested that RSC amendment can be applied to develop a cost-effective method for immobilizing Cr(VI) in polluted soils, thus lowering the environmental risk from Cr(VI) toxicity.     

Phytoextraction of trace elements by water hyacinth in contaminated area of gold mine tailing

The ability of water hyacinth (Eichhornia crassipes) to uptake Ag, Ba, Cd, Mo, and Pb from waters in gold mine tailing area was studied. All experiments were carried out in the field conditions without using of model system. Bioconcentration (BCF) and translocation factors (TF) as well as elements accumulation by plant in different points of tailings-impacted area were evaluated. It has been shown that water hyacinth demonstrates high ability to accumulate Mo, Pb, and Ba with BCF values 24,360 ± 3600, 18,800 ± 2800 and 10,040 ± 1400, respectively and is efficient in translocation of Mo and Cd. The general trend of the plant accumulation ability in relation to the studied elements corresponds to their concentration in the medium. As the distance from tailings increases, concentration of Ag, Ba and Pb in plant decreases more clearly than that of Cd, while the amount of Mo accumulated by plant doesn't drop significantly in accordance with its concentration in water. Under the conditions of the confluence of river Ur and drainage stream Ba and Ag can be considered as potential candidates for phytomining.