Three-dimensional species distribution modelling reveals the realized spatial niche for coral recruitment on contemporary Caribbean reefs

The three-dimensional structure of habitats is a critical component of species' niches driving coexistence in species-rich ecosystems. However, its influence on structuring and partitioning recruitment niches has not been widely addressed. We developed a new method to combine species distribution modelling and structure from motion, and characterized three-dimensional recruitment niches of two ecosystem engineers on Caribbean coral reefs, scleractinian corals and gorgonians. Fine-scale roughness was the most important predictor of suitable habitat for both taxa, and their niches largely overlapped, primarily due to scleractinians' broader niche breadth. Crevices and holes at mm scales on calcareous rock with low coral cover were more suitable for octocorals than for scleractinian recruits, suggesting that the decline in scleractinian corals is facilitating the recruitment of octocorals on contemporary Caribbean reefs. However, the relative abundances of the taxa were independent of the amount of suitable habitat on the reef, emphasizing that niche processes alone do not predict recruitment rates.     

Biogeographic context is related to local scale tree demography,co-occurrence and functional differentiation

Identifying the drivers of community structure and dynamics is a major pursuit in ecology. Emphasis is typically placed on the importance of local scale interactions when attempting to explain these fundamental ecological patterns. However, regional scale phenomena are also important predictors. The importance of regional scale context should be more evident in assemblages where multiple species are close to their range margins. Here, we test the importance of regional scale context using data from a temperate forest plot that contains two species groups – one near its northern range limit and one near its southern range limit. We show the proximity of species to their southern or northern range margins is linked to local scale co-occurrence, similarity in gene expression responses to a key environmental driver, demographic performance and inter-specific variation in conspecific negative density dependence. In sum, many of the key local scale patterns and processes of interest to community ecologists are linked to biogeographic context that is frequently ignored.     

Avian diversity and function across the world's most populous cities

Understanding the composition of urban wildlife communities is crucial to promote biodiversity, ecosystem function and links between nature and people. Using crowdsourced data from over five million eBird checklists, we examined the influence of urban characteristics on avian richness and function at 8443 sites within and across 137 global cities. Under half of the species from regional pools were recorded in cities, and we found a significant phylogenetic signal for urban tolerance. Site-level avian richness was positively influenced by the extent of open forest, cultivation and wetlands and avian functional diversity by wetlands. Functional diversity co-declined with richness, but groups including granivores and aquatic birds occurred even at species-poor sites. Cities in arid areas held a higher percentage of regional species richness. Our results indicate commonalities in the influence of habitat on richness and function, as well as lower niche availability, and phylogenetic diversity across the world's cities.     

Microhabitat use by marsh-edge fishes in a Louisiana estuary

Synopsis We used a drop sampler to characterize use of the marsh-edge ecotone by small fishes along two transects running inland from the Gulf of Mexico for ca. 25 km in Louisiana's Barataria-Caminada Bay System. Monthly sampling was stratified among upper, middle, and lower reaches and within reaches to characterize fish responses to salinity, depth, distance from shore, substrate, dissolved oxygen concentration, temperature, turbidity, velocity, and emergent stem density. In 681 quantitative samples, covering 658 m², collected between October 1987 and October 1989, we collected 57 fish species and 16 864 individuals, primarily larvae and juveniles. The 15 most abundant fishes, comprising 97.7% of all individuals, were concentrated near the marsh edge (i.e., 0 to 1.25 m distance). Some significant differences within species for seasonal variables (e.g., temperature and dissolved oxygen concentration) reflected the ephemeral duration of early life history stages. Other differences reflected ontogenetic microhabitat shifts (e.g., depth and distance from shore). Within ecological groups, characterized as demersal residents, nektonic transients, and demersal transients, spatial and temporal segregation reflected the particular habitat requirements of each species. In a principal component analysis of microhabitat use, the first three components were interpreted as seasonal, depth-and-distance, and salinity axes, respectively. The array of species and size classes in principal component space reflected the complex dimensionality of microhabitat use. The high density of fish larvae and juveniles near the marsh edge confirmed the importance of the marsh-edge ecotone as a nursery for many estuarine-dependent fishes.     

土壤理化性质驱动烤烟根际细菌群落的组配及其共现性网络互作

【目的】解析土壤微生物在植物根际的组配机制对于认识和维护农田生态系统的稳定性至关重要。【方法】通过Illumina高通量测序和生物信息学分析方法明确了我国主要种植烟草生态区烤烟根际土壤细菌群落与土壤理化性质的互作关系。【结果】烤烟根际细菌类群主要为放线菌纲(Actinobacteria)、α-变形菌纲(Alphaproteobacteria)、γ-变形菌纲(Gammaproteobacteria)和嗜热油菌纲(Thermoleophilia)。细菌群落组成按生态区聚类,且样本空间距离和细菌群落相似度显著负相关。共现性网络分析表明,烤烟根际细菌群落间协同作用大于拮抗作用,武陵秦巴生态区、黄淮平原生态区、南岭丘陵生态区和沂蒙丘陵生态区细菌群落高度模块化,小单胞菌属(Micromonospora)为南岭丘陵生态区和黄淮生态区细菌共现性网络的网络中心,Bryobacter和气单胞菌属(Arenimonas)为南岭丘陵生态区细菌网络的模块核心,其菌群特性而非相对丰度决定了其在稳定细菌网络中的重要作用。冗余分析结果证实pH、有效铁、交换性镁和有效锰能显著影响烤烟根际细菌群落结构。【结论】烤烟根际细...     

Coevolution of species colonisation rates controls food-chain length in spatially structured food webs

How the complexity of food webs depends on environmental variables is a long-standing ecological question. It is unclear though how food-chain length should vary with adaptive evolution of the constitutive species. Here we model the evolution of species colonisation rates and its consequences on occupancies and food-chain length in metacommunities. When colonisation rates can evolve, longer food-chains can persist. Extinction, perturbation and habitat loss all affect evolutionarily stable colonisation rates, but the strength of the competition-colonisation trade-off has a major role: weaker trade-offs yield longer chains. Although such eco-evo dynamics partly alleviates the spatial constraint on food-chain length, it is no magic bullet: the highest, most vulnerable, trophic levels are also those that least benefit from evolution. We provide qualitative predictions regarding how trait evolution affects the response of communities to disturbance and habitat loss. This highlights the importance of eco-evolutionary dynamics at metacommunity level in determining food-chain length.     

Parasitism byAphidius ervi (Hym.: Aphidiidae): Preference for pea aphid and blue alfalfa aphid (Hom.: Aphididae) and competition withA. Smithi

The pea aphidAcyrthosiphon pisum (Harris) and the blue alfalfa aphidA. kondoi Shinji are pests of alfalfaMedicago sativa L. worldwide. The parasitoidAphidium ervi Haliday attacks both species andA. smithi is host specific to pea aphid Experiments were conducted to determine the preference ofA. ervi forA. pisum andA. kondoi at three densities of hosts using the percentages of parasitism and superparasitism, and the distribution of eggs among hosts as criteria. Also examined was the outcome of competition between the two parasitoids when exposed to the same hosts. A. ervi attacks moreA. pisum when provided alone (no choice test) and when provided together in equal numbers withA. kondoi (choice test). There was no significant difference in the number of progeny produced by either parasitoid when a female of each species was introduced simultaneously into the same test unit containingA. pisum hosts. The effects of the pathogenPandora neoaphidis on this competition is reviewed.     

Determining desirable levels of ecosystem services per capita

Ecosystem services are the numerous, essential processes that natural ecosystems provide free to human societies. Examples include the maintenance of breathable air; the movement, storage, and purification of water; the breakdown of wastes; and the provision of food, building materials, and medicines. However, the exponential increases in human population and concomitant environmental destruction make it likely that the level of ecosystem services available per capita will decline. There are three possible scenarios. First, if present practices continue, ecosystem services per capita will surely decline. Second, if a no-net-loss policy is implemented for habitats and species, ecosystem services per capita will still decline due to increases in human population, but the declines will be less precipitous. Third, if habitat is restored (including concomitant ecosystem services) at a rate exceeding that of destruction, then, perhaps the current level of ecosystem services per capita can be maintained, or even expanded to provide increased levels of ecosystem services per capita to more of the world's people.     

Restoration management of abandoned chalk grassland in the Netherlands

After abandonment of chalk grassland in the Netherlands, Brachypodium pinnatum had become very dominant and this resulted in a dramatic decrease of plant diversity. Restoration of these abandoned sites is important, because of its former high diversity with many nationally endangered species. To restore the chalk grassland vegetation, the impact of the introduction of different experimental cutting regimes was investigated during three years. The thick litter layer and the dominance of Brachypodium was strongly reduced after introduction of all cutting regimes. In all cutting treatments forb phytomass increased considerably, especially in the twice-a-year cutting vegetation, where the forb phytomass became as high as that of Brachypodium. Phanerogamic species diversity was stimulated in all cutting regimes. Especially the number of short-lived forbs. with a persistent seed bank, increased markedly in the twice-a-year cutting treatment. It is concluded that cutting the vegetation twice is adequate to reduce the negative effects of the thick litter layer and the abundant growth of Brachypodium. It creates an appropriate starting point for more detinite management, whether mowing or grazing. However, the restoration of a more complete species assortment strongly depends on the re-invasion possibilities of these species.