农业景观中非农景观要素结构特征对植物物种多样性的影响——以封丘县为例

农业景观中的非农生境对维持与提高农业景观的生物多样性具有非常关键的作用。为了探究非农生境的相关结构属性对农业景观中植物物种多样性的影响,选择黄河下游平原区的封丘县为研究区域,对研究区内42个样点的非农生境进行植物多样性调查,并对各个样点周围1 km范围内的非农景观要素进行了提取,分析不同非农生境中植物物种组成及其景观要素的构成、结构及空间配置对植物物种多样性的影响。研究结果表明:不同类型的非农生境中,物种组成共有种相对较多,特有种或指示种较少;林地与树篱具有相对较高的物种多样性,以沟渠为生境的植物物种组成与其它两种生境类型相比存在明显差异;林地与树篱/沟渠的组成比例相当时,植物物种丰富度最高;景观指数对不同非农生境中的植物物种具有明显影响,景观破碎化及人为干扰指数的影响较为显著。未来在对本区域内农业景观进行结构优化的过程中,应从非农景观要素的改造入手。通过调整和设置非农景观要素的不同类型及比例、合理改造其结构与空间配置,为最终实现农业景观的有效管理与可持续健康发展奠定重要的研究基础。     

Home range and habitat use of male Reeves’s pheasant (Syrmaticus reevesii) during winter in Dongzhai National Nature Reserve, Henan Province, China

Home range and habitat use of male Reeves’s pheasant (Syrmaticus reevesii) were studied during winter of 2001∼2002 and 2002∼2003 in the Dongzhai National Nature Reserve, Henan Province. Results from five individuals of Reeves’s pheasant with over 30 relocations, indicated that the average size of home range was 10.03 ± 1.17 hm² by Minimum Convex Polygon method, 8.60 ± 0.35 hm² by 90% Harmonic Mean Transformation method, and 9.50 ± 1.90 hm² by 95% Fixed Kernel method. It was observed that the winter range is smaller than that in the breeding season. The mean core area of the home range was found to be 1.88 ± 0.37 hm². Although the habitat composition of the core area varied greatly for individuals, a large part of the habitats used were composed of confier and broadleaf mixed forests, masson pine forests, fir forests, and shrubs. Habitat use within the study area was non-random, while habitats within home ranges were randomly used. Habitat use was dictated by tree diameter at breast height, shrub height and coverage at 2.0 m. The proximity between forests and shrubs were also found to be important in providing refuge for the birds during winter. Recommendations for conservation management include protecting the existing habitats in Dongzhai National Nature Reserve, increasing suitable habitat for Reeves’s Pheasant through artificial plantations (e.g. firs), and restoring some parts of the large shrub area into forests. __________ Translated from Biodiversity Science, 2005, 13 (5) [译自: 生物多样性, 2005,13(5)]     

'Beetle banks' as refuges for beneficial arthropods in farmland: long-term changes in predator communities and habitat

Abstract 1 Significant differences in the overwintering densities of predatory carabid and staphylinid beetles and spiders occurred on an ‘island’ grassy bank habitat composed of blocks of Agrostis stolonifera, Dactylis glomerata, Holcus lanatus and Lolium perenne, within and between winters during a 7‐year study. 2 Densities of the predators over the last three winters of the study were greater in the bank than in the boundary of the field in which the bank was situated. 3 Succession occurred in plots of L. perenne, with D. glomerata fully replacing this species. Plots of D. glomerata and H. lanatus remained virtually mono‐specific. 4 Over the period of study, the beetle bank maintained its role in providing overwintering habitat for polyphagous predators and carabid diversity has increased since the bank was first established. Beetle banks were therefore shown to contribute to conservation biodiversity in an agroecosystem.     

Association of short-term memory with a variant within DYX1C1 in developmental dyslexia

A substantial genetic contribution in the etiology of developmental dyslexia (DD) has been well documented with independent groups reporting a susceptibility locus on chromosome 15q. After the identification of the DYX1C1 gene as a potential candidate for DD, several independent association studies reported controversial results. We performed a family-based association study to determine whether the DYX1C1 single nucleotide polymorphisms (SNPs) that have been associated with DD before, that is SNPs '-3GA' and '1249GT', influence a broader phenotypic definition of DD. A significant linkage disequilibrium was observed with 'Single Letter Backward Span' (SLBS) in both single-marker and haplotype analyses. These results provide further support to the association between DD and DYX1C1 and it suggests that the linkage disequilibrium with DYX1C1 is more saliently explained in Italian dyslexics by short-term memory, as measured by 'SLBS', than by the categorical diagnosis of DD or other related phenotypes.     

A genomic prediction model for racecourse starts in the Thoroughbred horse

Durability traits in Thoroughbred horses are heritable, economically valuable and may affect horse welfare. The aims of this study were to test the hypotheses that (i) durability traits are heritable and (ii) genetic data may be used to predict a horse's potential to have a racecourse start. Heritability for the phenotype ‘number of 2‐ and 3‐year‐old starts’ was estimated to be  = 0.11 ± 0.02 (n = 4499). A genome‐wide association study identified SNP contributions to the trait. The neurotrimin (NTM), opioid‐binding protein/cell adhesion molecule like (OPCML) and prolylcarboxypeptidase (PRCP) genes were identified as candidate genes associated with the trait. NTM functions in brain development and has been shown to have been selected during the domestication of the horse. PRCP is an established expression quantitative trait locus involved in the interaction between voluntary exercise and body composition in mice. We hypothesise that variation at these loci contributes to the motivation of the horse to exercise, which may influence its response to the demands of the training and racing environment. A random forest with mixed effects (RFME) model identified a set of SNPs that contributed to 24.7% of the heritable variation in the trait. In an independent validation set (n = 528 horses), the cohort with high genetic potential for a racecourse start had significantly fewer unraced horses (16% unraced) than did low (27% unraced) potential horses and had more favourable race outcomes among those that raced. Therefore, the information from SNPs included in the model may be used to predict horses with a greater chance of a racecourse start.     

随机SNP在全基因组关联研究人群分层分析中的应用

在复杂疾病的全基因组关联研究中,人群分层现象会增加结果的假阳性率,因此考虑人群遗传结构、控制人群分层是很有必要的。而在人群分层研究中,使用随机选择的SNP的效果还有待进一步探讨。文章利用HapMap Phase2人群中无关个体的Affymetrix SNP 6.0芯片分型数据,在全基因组上随机均匀选择不同数量的SNP,同时利用f值和Fisher精确检验方法筛选祖先信息标记（Ancestry Informative Markers,AIMs）。然后利用HapMap Phase3中的无关个体的数据,以F-statistics和STRUCTURE分析两种方法评估所选出的不同SNP组合对人群的区分效果。研究发现,随机均匀分布于全基因组的SNP可用于识别人群内部存在的遗传结构。文章进一步提示,在全基因组关联研究中,当没有针对特定人群的AIMs时,可在全基因组上随机选择3000以上均匀分布的SNP来控制人群分层。     

鹅掌楸贵州烂木山居群的微卫星遗传多样性及空间遗传结构

濒危植物鹅掌楸(Liriodendron chinense)目前仅零散分布于我国亚热带及越南北部地区, 残存居群生境片断化较为严重。研究濒危植物片断化居群的遗传多样性及小尺度空间遗传结构(spatial genetic structure)有助于了解物种的生态进化过程以及制定相关的保育策略。本研究采用13对微卫星引物, 对鹅掌楸的1个片断化居群进行了遗传多样性及空间遗传结构的研究, 旨在揭示生境片断化条件下鹅掌楸的遗传多样性及基因流状况。研究结果表明: 鹅掌楸烂木山居群内不同生境斑块及不同年龄阶段植株的遗传多样性水平差异不显著(P>0.05), 居群内存在寨内和山林2个遗传分化明显的亚居群。烂木山居群个体在200 m以内呈现显著的空间遗传结构, 而2个亚居群内的个体仅在20 m的距离范围内存在微弱或不显著的空间遗传结构。鹅掌楸的空间遗传结构强度较低(Sp = 0.0090), 且寨内亚居群的空间遗传结构强度(Sp = 0.0067)要高于山林亚居群(Sp = 0.0053)。鹅掌楸以异交为主, 种子较轻且具翅, 借助风力传播, 在一定程度上降低了空间遗传结构的强度。此外, 居群内个体密度及生境特征也对鹅掌楸的空间遗传结构产生了一定影响。该居群出现显著的杂合子缺失, 近交系数(F_IS)为0.099 (P < 0.01), 表明生境片断化的遗传效应正逐渐显现。因此, 对鹅掌楸的就地保护应注意维护与强化生境的连续性, 促进基因交流。迁地保护时, 取样距离应不小于20 m, 以涵盖足够多的遗传变异。     

林木基因组及功能基因克隆研究概述

在美国能源部资助下, 首个多年生木本植物-- 杨树的全基因组测序已经完成且序列信息已对公众开放。杨树全基因组测序的完成标志着林木基因组进入后基因组研究时代。克隆控制重要性状的主效基因是林木后基因组时代的主要研究内容。近年来, 在一些重要作物, 如水稻、蕃茄及玉米中, 先后成功克隆了多个控制重要农艺性状的主效基因, 分子育种在作物中已进入实用阶段。林木相对于这些重要作物而言, 分子遗传学的研究起步较晚, 同时, 由于林木自身的一些生物学特性, 在林木中精确定位与克隆未知基因一度被视为遗传学研究领域的难点。随着技术和研究手段的不断进步, 以及林木基因组资源的快速积累, 有望在这一领域取得突破, 为在林木中开展分子育种创造条件。文章综述了国际上林木基因组与功能基因克隆研究的现状与新发展, 并对后基因组时代的林木功能基因克隆研究的预期成果进行了展望, 以期为从事该领域研究的科研人员提供参考。     

辽宁省辽河水生态系统健康评价

2009年6-8月,在对辽宁省辽河铁岭段、沈阳段、盘锦段20个断面水文、水质、着生藻类、栖息地状况实地调查的基础上,采用主成分分析方法,进行指标的筛选与指标权重的确定,构建了该河流水生态系统健康评价指标体系和健康评价标准体系,并用改进的灰色关联度法对辽河6个断面的水生态系统健康状况进行了评价.结果表明：辽宁省辽河3个评价断面的水生态系统健康程度一般,2个评价断面分别为较差和极差,仅有1个评价断面达到了亚健康程度,说明辽河河流水生态系统生态退化严重,需要进一步加强辽河水系的生态恢复及水环境污染综合治理.