Gene rearrangements in Chlamydomonas chloroplast DNAs are accounted for by inversions and by the expansion/contraction of the inverted repeat

To gain insight into the mutational events responsible for the extensive variation of chloroplast DNA (cpDNA) within the green algal genus Chlamydomonas, we have investigated the chloroplast gene organization of Chlamydomonas pitschmannii, a close relative of the interfertile species C. eugametos and C. moewusii whose cpDNAs have been well characterized. At 187 kb, the circular cpDNA of C. pitschmannii is the smallest Chlamydomonas cpDNA yet reported; it is 56 and 105 kb smaller than those of its C. eugametos and C. moewusii counterparts, respectively. Despite this substantial size difference, the arrangement of 77 genes on the C. pitschmannii cpDNA displays only three noticeable differences from the organization of the corresponding genes on the collinear C. eugametos and C. moewusii cpDNAs. These changes in gene order are accounted for by the expansion/contraction of the inverted repeat and one or two inversions in a single-copy region. In land plant cpDNAs, these kinds of events are also responsible for gene rearrangements. The large size difference between the C. pitschmannii and C. eugametos/C. moewusii cpDNAs is mainly attributed to multiple events of deletions/additions as opposed to the usually observed expansion/contraction of the inverted repeat in land plant cpDNAs. We also found that the mitochondrial genome of C. pitschmannii is a circular DNA molecule of 16.5 kb which is 5.5 and 7.5 kb smaller than its C. moewusii and C. eugametos counterparts, respectively.     

Utilisation of Ulva rigida biomass in the Venice Lagoon (Italy): biotransformation in compost

In the Venice Lagoon (Italy), about 10⁶ t (wet weight) of Ulva rigida biomass are produced annually as one of the major results of eutrophication. Harvests have been initiated to reduce negative impacts of this biomass, however, due to the high costs of such effort, only 40 000 t yr^-1 are currently being collected. At the moment, biotransformation into compost seems to be the only feasible technology for utilising large quantities of Ulva biomass. We describe and discuss here a successful composting strategy together with the chemico-physical and microbiological characteristics of the resultant composts. Our composting experiments were conducted at a scale of 20 t. The composting technology utilises large proportions (70–90%) of Ulva biomass and results in a valuable, high-quality end product (compost and compost-based products). This process and the resulting products represents a relatively simple way of utilising the Ulva biomass produced annually in the Venice Lagoon.     

COLONY DEVELOPMENT IN EUDORINA ELEGANS (CHLOROPHYTA,VOLVOCALES)1

A detailed ultrastructure study was made of cell division and colony development in Eudorina elegans Ehrenberg. At the onset of cell division and prior to nuclear division the nucleus moved from the cell center to the cell surface. During nuclear division the nuclear membrane remained intact, except for openings occurring at the nuclear poles. The spindle microtubules appeared to arise from a MTOC-like (microtubule organizing centers) structure, while centrioles were absent from the nuclear poles. Following telophase, daughter nuclei formed which were separated by several distinct bands of endoplasmic reticulum. Cytokinesis occurred with formation of a cleavage furrow, associated with a typical phycoplast band of microtubules. However, cytokinesis was incomplete, resulting in formation of cytoplasmic bridges between the plakeal cells. Upon completion of up to five successive cell divisions, the plakea underwent inversion, which appeared to involve the production of colonial envelope material and rearrangement of cytoplasmic bridges. A new hypothesis concerning inversion is postulated based on these observations.     

Studies on plating efficiency and estimation of viability of suspensions of Paracoccidioides brasiliensis yeast cells

Mild sonication was used to obtain single cell suspensions of Paracoccidioides brasiliensis. These cells were intact by microscopic criteria. Direct cell counts in a given inoculum and colony formation on various media were used to determine plating efficiency. Sonicated and nonsonicated cell suspensions were used to study plating efficiency and to estimate viability by means of vital dyes. Methylene blue, Erythrosin B, and Janus green were unreliable when used with P. brasiliensis, but vital dyes were accurate when tested with Candida albicans.Acridine orange gave more meaningful results of viability. Estimates of viability, however, changed significantly as a result of relatively minor alterations in the composition of the suspending medium.In initial experiments, the plating efficiency of P. brasiliensis was dismally low. It descended abruptly with increasing dilution of inoculum. Efficiency was much improved if horse serum was added to brain heart infusion plates or if glucose glycine yeast extract (GGY) plates were incubated at room temperature and mycelial colonies were counted. With the technique we report, current plating efficiency of sonicated suspensions is of the order of 25 %. Our results and procedures have an important bearing upon those studies concerned with in vitro killing of P. brasiliensis in suspensions or with isolating this fungus from clinical or environmental specimens.     

Sulphite oxidation by mitochondria from green and etiolated peas

Sulphite oxidation by mitochondria prepared from green pea epicotyls had a higher K_m than did the sulphite oxidation of mitochondria prepared from etiolated pea epicotyls. Mitochondrial sulphite oxidation from green and etiolated tissues was inhibited by cyanide but not by azide, rotenone, antimycin A or oligomycin. Mitochondria from green and etiolated tissues were able to oxidize glyoxal-bisulphite, but not as effectively as sulphite.     

MORPHOLOGY AND DISTRIBUTION OF NUCLEI DURING DEVELOPMENT IN CYMOPOLIA BARBATA (CHLOROPHYCOPHYTA,DASYCLADALES)1

The morphology and distribution of a variety of types of nucleus in the apex, in young and mature gametangia, and in older regions of the Cymopolia cell were studied by light and electron microscopy. Spherical and convoluted nuclei 2–7μm in diameter were observed in apical regions of the vegetative siphon. Nuclei 4 μm in diameter were present in the young primary laterals and in developing gametangia. A single characteristic nucleus migrates from the siphon into the primary lateral of the second basipetal whorl. It is further transported into one of several possible secondary laterals and determines the development of gametangia which become multinucleate in the fourth or fifth whorls. Nuclei are characterized by size, shape, nucleolar morphology, nucleoplasmic inclusions and the ultrastructure of the perinuclear cytoplasm. Although no “primary nucleus” characteristic of the uninucleate genera, Acetabularia and Batophora was observed, some nuclei of Cymopolia have features in common with secondary nuclei of these genera.     

Antimetabolic activities of 2-fluoro-L-histidine.

2-Fluoro-L-Histidine inhibits protein synthesis in various cell cultures, as measured by ³H-leucine incorporation. This histidine analog also inhibits the cytopathogenicity of a number of RNA and DNA viruses in primary and continuous cell cultures; it blocks the transformation of normal mouse (MO) cells by murine sarcoma virus, and partially suppresses the release of murine leukemia virus by a continuously infected mouse cell line (JLSV5). In human skin fibroblasts, it reduces the interferon-inducing capacity of poly(I)·poly(C). Inhibition of cell protein synthesis may be the common cause of the various effects. 4-Fluoro-L-histidine is essentially inert in all of the test systems examined.     

分枝杆菌LY-1内源性表达元件的筛选及其在降低Cas9蛋白毒性中的应用

【背景】分枝杆菌LY-1因能够将天然植物甾醇代谢转化为重要甾体药物中间体,目前已成为工业上的优势生产菌株。高效的CRISPR/Cas9基因编辑技术是工业菌株代谢工程改造进行产量性状提升的关键。然而由于Cas9蛋白的高表达毒性问题且分枝杆菌中已公开报道的可用表达元件较少,极大地限制了Cas9蛋白在该菌株中的适度表达。【目的】筛选内源性表达元件,利用合适的表达元件启动Cas9蛋白的表达,降低其对菌株的毒性。【方法】依据文献和前期研究获得的分枝杆菌基因转录组水平数据,并结合启动子在线预测网站BDGP(https://www.fruitfly.org/seq＿tools/promoter.html),筛选内源性表达元件。以增强型绿色荧光蛋白作为报告基因对表达元件的强度进行评估,并采用不同强度的表达元件启动Cas9蛋白的表达。【结果】获得了23个不同表达强度的表达元件,采用中等强度的表达元件及弱表达元件都降低了Cas9蛋白对分枝杆菌LY-1的毒性,实现了Cas9蛋白在该菌株中的适度表达。【结论】建立了分枝杆菌LY-1内源性表达元件库,为后续菌株中高效CRISPR/Cas9基因编辑技术的构建及关键...     

台风“山竹”对深圳城市绿地及生物量的影响

台风是影响沿海城市绿地生态系统最主要、最频繁的自然干扰因子。2018年9月的台风"山竹"以强台风等级袭击深圳,陆地最大阵风达46.5 m/s(15级)。以深圳市区绿地(公园绿地、居民区绿地、行道树)中的乔木为研究对象,通过灾后实地调研,采用相关统计方法以及生物量评估方法,探讨了台风"山竹"对深圳市区绿地的影响。结果表明:(1)深圳市区调查树木受损比例高达21.4%,其中以轻度受损(枝干折断)为主;市区树冠生物量总量较台风之前下降了8.44%。(2)南部地区受损程度明显高于内陆,东南地区受损程度高于西北地区;福田区、龙岗区以及坪山新区受损情况最为严重,受损树木比例均超过30%。中东部树冠生物量损失程度高于西部地区。(3)公园绿地受损最为严重,居民区绿地的受损情况最轻。(4)行道树中黄金榕、腊肠树受损比例均超过50%,而棕榈科植物受损程度较轻。研究结果可为深圳市抗风树种的选择、不同类型绿地针对台风的减灾防灾策略提供科学依据。     

上海环城林带景观美学评价及优化策略

选取上海环城林带7种植物群落,采用美景度评判法,从林内景观和林外景观2个空间层次和春、夏、秋、冬4个季节,应用数量化理论Ⅰ建立了美景度和各景观因子类目之间的景观评价与预测的多元回归模型,分析了群落的结构特征和季相特征对林内景观以及外貌特征对林外景观的影响,并提出相应的优化对策。结果表明:(1)群落结构特征对林内景观的影响主要因子为胸径(平均胸径和胸径变异系数)、郁闭度和疏透度。在春季,林内美景度随着树木胸径增大而增加;在夏季,郁闭度增大会提升林内美景度;在秋季,胸径变异小的群落具有更高的林内观赏性;在冬季,疏透度对林内景观美景度影响最大。(2)群落季相特征对林内景观的影响,在各季节表现亦不同。在春季,黄色、紫色等明度较高的色相和开花量适中的群落美景度最佳;在夏季,生长势好、林冠层变化小以及树干清晰度高的群落具较高的美景度,且观花可显著提高夏季林内美景度;在秋季,色彩越纯美景度越高;而在冬季,树皮颜色深的群落美景度高。(3)群落外貌特征对林外景观有显著影响,其中林冠线对林外景观美景度影响最大,其次为林缘线。具有起伏不大林冠线和自然流畅林缘线的植物群落美景度高。旨在通过对典型植被群落不同季相的美景度评价,对上海环城林带的群落景观进行定量的评价,进而为不同情景下的群落结构优化提出相应的对策,为城市森林的群落建构与管理提供科学依据。