The bacterial paromomycin resistance gene, aphH, as a dominant selectable marker in Volvox carteri

The aminoglycoside antibiotic paromomycin that is highly toxic to the green alga Volvox carteri is efficiently inactivated by aminoglycoside 3′-phosphotransferase from Streptomyces rimosus. Therefore, we made constructs in which the bacterial aphH gene encoding this enzyme was combined with Volvox cis-regulatory elements in an attempt to develop a new dominant selectable marker – paromomycin resistance (Pm^R) – for use in Volvox nuclear transformation. The construct that provided the most efficient transformation was one in which aphH was placed between a chimeric promoter that was generated by fusing the Volvox hsp70 and rbcS3 promoters and the 3′ UTR of the Volvox rbcS3 gene. When this plasmid was used in combination with a high-impact biolistic device, the frequency of stable Pm^R transformants ranged about 15 per 10⁶ target cells. Due to rapid and sharp selection, Pm^R transformants were readily isolated after six days, which is half the time required for previously used markers. Co-transformation of an unselected marker ranged about 30%. The chimeric aphH gene was stably integrated into the Volvox genome, frequently as tandem multiple copies, and was expressed at a level that made selection of Pm^R transformants simple and unambiguous. This makes the engineered bacterial aphH gene an efficient dominant selection marker for the transformation and co-transformation of a broad range of V. carteri strains without the recurring need for using auxotrophic recipient strains.     

DNA重组酶Cre介导载体间基因的重组转移

DNA重组酶Cre可以识别LoxP位点,使含有LoxP位点的DNA分子发生重组:2个同向LoxP之间的DNA片段被删除,2个环状DNA分子被整合为一个大分子.基于Cre酶的这些作用特性,构建了一套载体间基因的重组转移体系,在Cre酶的作用下,gfp基因被从基因供体pTLG上切除下来,然后转移到基因受体pET-LoxP上,从而快速、简便地完成了gfp基因高效表达载体pET-gfp的构建.gfp基因在大肠杆菌BL21(DE3)中被诱导表达,使菌落产生了可视的绿色荧光.通过对荧光菌落的计数分析,比较了环状基因供体pTLG和线性基因供体pTLG对有效重组率的影响.使繁琐的传统载体构建变为简单的酶促反应,极大地简化了载体构建步骤,为Cre酶在基因克隆和亚克隆中的应用提供了很好的研究基础.     

Factors in the determination of methanogenic potential of manure

The influence of the substrate concentration, the micro and macro nutrients and buffer requirements, the sludge origin (biomass that is acclimatized or not acclimatized to waste) and the inoculum/substrate ratio (ISR) were studied to determine their effects in the methanogenic potential of turkey manure, which is a solid waste. According to the results obtained, the methane production determination does not require the addition of nutrients (additional to the contents in the waste) and a buffer for this type of assay. The methane yield (Y_CH4) performance is given by the substrate concentration and the sludge origin, therefore it is better to carry out the assay with biomass that is already adapted to the waste. The methanogenic potential of this type of waste is not determined by the amount of sludge and it does not need an external inoculum (external to the waste contents).     

Glutamate dehydrogenase in brain mitochondria: do lipid modifications and transient metabolon formation influence enzyme activity?

Metabolism of glutamate, the primary excitatory neurotransmitter in brain, is complex and of paramount importance to overall brain function. Thus, understanding the regulation of enzymes involved in formation and disposal of glutamate and related metabolites is crucial to understanding glutamate metabolism. Glutamate dehydrogenase (GDH) is a pivotal enzyme that links amino acid metabolism and TCA cycle activity in brain and other tissues. The allosteric regulation of GDH has been extensively studied and characterized. Less is known about the influence of lipid modifications on GDH activity, and the participation of GDH in transient heteroenzyme complexes (metabolons) that can greatly influence metabolism by altering kinetic parameters and lead to channeling of metabolites. This review summarizes evidence for palmitoylation and acylation of GDH, information on protein binding, and information regarding the participation of GDH in transient heteroenzyme complexes. Recent studies suggest that a number of other proteins can bind to GDH altering activity and overall metabolism. It is likely that these modifications and interactions contribute additional levels of regulation of GDH activity and glutamate metabolism.     

Sphingosine 1-phosphate receptors modulate intracellular Ca2+ homeostasis

Ligation of sphingosine 1-phosphate (S1P) to a set of specific receptors named S1P receptors (S1PRs) regulates important biological processes. Although the ability of S1P to increase cytosolic Ca2+ in various cell types is well known, the role of the individual S1PRs has not been fully characterized. Here, we provide a complete analysis of S1P-dependent intracellular Ca2+ homeostasis in HeLa cells. Overexpression of S1P2, or S1P3, but not S1P1, leads to a significant increase in cytosolic and mitochondrial [Ca2+] in response to S1P challenge. Moreover, cells ectopically expressing S1P2, or S1P3 exhibited an appreciable decrease of the free Ca2+ concentration in the endoplasmic reticulum, dependent on stimulation of receptors by S1P endogenously present in the culture medium which was accompanied by a reduced susceptibility to C2-ceramide-induced cell death. These results demonstrate a differential contribution of individual S1PRs to Ca2+ homeostasis and its possible implication in the regulation of cell survival.     

城市公园绿地水、热与CO2通量观测与分析

水、热和CO2通量是评价城市绿地生态效益的重要指标。在北京海淀公园中部和边缘架设涡度相关系统,连续观测和定量研究城市公园绿地影响下的通量变化特征。结果表明,公园绿地所获得的净辐射在植被生长季节大部分用于植被的蒸散作用,潜热大于显热;而在植被非生长季节大部分用于显热,潜热数值非常小。晴天显热与潜热的比值在春季随着植被枝叶的生长逐渐减少,到夏季达到最小值约1/3,在秋季随着植被叶片枯黄逐渐变大,冬季达到数倍。公园绿地能量平衡率在52%～83%,普遍存在能量不平衡。公园中部的潜热观测值大于公园边缘,而显热小于公园边缘;公园中部CO2通量日均值为负,公园绿地是CO2汇。公园绿地在植被生长季节具有明显的降温增湿、吸收CO2等生态效应。     

Gastrophysa polygoni herbivory on Rumex confertus: single leaf VOC induction and dose dependent herbivore attraction/repellence to individual compounds

We report large induction (>65_fold increases) of volatile organic compounds (VOCs) emitted from a single leaf of the invasive weed mossy sorrel, Rumex confertus Willd. (Polygonaceae), by herbivory of the dock leaf beetle, Gastrophysa polygoni L. (Coleoptera: Chrysomelidae). The R. confertus VOC blend induced by G. polygoni herbivory included two green leaf volatiles ((Z)-3-hexenal, (Z)-3-hexen-1-yl acetate) and three terpenes (linalool, ß-caryophyllene, (E)-ß-farnesene). Uninjured leaves produced small constitutive amounts of the GLVs and barely detectable amounts of the terpenes. A Y-tube olfactometer bioassay revealed that both sexes of adult G. polygoni were attracted to (Z)-3-hexenal and (Z)-3-hexen-1-yl acetate at a concentration of 300 ng h⁻¹. No significant G. polygoni attraction or repellence was detected for any VOC at other concentrations (60 and 1500 ng h⁻¹). Yet, G. polygoni males and females were significantly repelled by (or avoided) at the highest test concentration (7500 ng h⁻¹) of both GLVs and (E)-ß-farnesene. Mated male and female G. polygoni might be attracted to injured R. confertus leaves, but might avoid R. confertus when VOC concentrations (especially the terpene (E)-ß-farnesene) suggest high overall plant injury from conspecifics, G. viridula, or high infestations of other herbivores that release (E)-ß-farnesene (e.g., aphids). Tests in the future will need to examine G. polygoni responses to VOCs emitted directly from uninjured (constitutive) and injured (induced) R. confertus, and examine whether R. confertus VOC induction concentrations increase with greater tissue removal on a single leaf and/or the number of leaves with feeding injury.     

Into the deep: new discoveries at the base of the green plant phylogeny

Recent data have provided evidence for an unrecognised ancient lineage of green plants that persists in marine deep-water environments. The green plants are a major group of photosynthetic eukaryotes that have played a prominent role in the global ecosystem for millions of years. A schism early in their evolution gave rise to two major lineages, one of which diversified in the world's oceans and gave rise to a large diversity of marine and freshwater green algae (Chlorophyta) while the other gave rise to a diverse array of freshwater green algae and the land plants (Streptophyta). It is generally believed that the earliest-diverging Chlorophyta were motile planktonic unicellular organisms, but the discovery of an ancient group of deep-water seaweeds has challenged our understanding of the basal branches of the green plant phylogeny. In this review, we discuss current insights into the origin and diversification of the green plant lineage.     

基于植物-土壤反馈的不同绿肥驯化微生物对玉米生长的影响

【背景】在农田生态系统中,土壤微生物与植物互作的机制仍不清楚。【目的】进一步加强对植物-微生物互作的认识,筛选出引起不同反馈作用的关键微生物或微生物类群。【方法】采集豆科绿肥救荒野豌豆(Vicia sativa, V)、十字花科绿肥油菜(Brassica napus, N)和荒坡土壤(remnant prairie, R)驯化的田块土壤0-20 cm作为菌剂在温室进行植物-土壤反馈(plant-soil feedback,PSF)试验。土壤菌剂的接种量为10%,即有90%理化性质一致的灭菌土壤作为背景土,同时设置灭菌土壤菌剂作为对照(CK),种植玉米。每组土壤菌剂处理均分为50 mg/kg高磷(high phosphorus,HP)和5 mg/kg低磷(low phosphorus, LP)两个磷浓度处理。玉米收获后,测定产量和植株地上部磷含量,并取土壤样品进行高通量测序,解析不同养分供给情况下微生物对作物生长的反馈效应。【结果】高磷和土壤反馈效应均促进了玉米的生长。在低磷水平下,V、N和R处理的玉米地上部生物量均高于CK处理,但N处理的玉米地上部生物量增加最多(38%),且增幅显著高...     

有机肥施用对红壤原生生物与微生物互作的影响

为明确不同施肥处理对土壤原生生物群落、微生物碳代谢活性的影响,以南方典型旱地红壤为研究对象,基于中国科学院鹰潭红壤生态实验站玉米单作系统有机培肥长期定位试验,选取不施肥(M0)、低量猪粪(M1)、高量猪粪(M2)、高量猪粪+石灰(M3)4个处理,利用高通量测序技术研究不同猪粪处理下红壤原生生物多样性、群落结构的变化,揭示原生生物与微生物互作对土壤微生物碳代谢活性和玉米产量的影响。结果表明：(1)长期施用猪粪处理下,土壤pH、有机质(SOM)、全氮(TN)、全磷(TP)、速效磷(AP)和速效钾(AK)的含量显著提高;(2)与M0处理相比,施肥处理显著提高了原生生物生物量和多样性,并且显著改变了其群落结构,其中土壤TP、pH、AP、TN、SOM和AK是原生生物群落结构变化的重要驱动因子;(3)施肥处理显著提高了土壤细菌和真菌生物量,增加了微生物碳代谢活性(Average well color development, AWCD);(4)土壤pH和AP通过影响原生生物多样性和群落结构,间接提高了微生物碳代谢活性和玉米产量。本研究结果为提升旱地红壤的生物多样性,保障土壤健康和维持生态系统服务功...