Three-dimensional species distribution modelling reveals the realized spatial niche for coral recruitment on contemporary Caribbean reefs

The three-dimensional structure of habitats is a critical component of species' niches driving coexistence in species-rich ecosystems. However, its influence on structuring and partitioning recruitment niches has not been widely addressed. We developed a new method to combine species distribution modelling and structure from motion, and characterized three-dimensional recruitment niches of two ecosystem engineers on Caribbean coral reefs, scleractinian corals and gorgonians. Fine-scale roughness was the most important predictor of suitable habitat for both taxa, and their niches largely overlapped, primarily due to scleractinians' broader niche breadth. Crevices and holes at mm scales on calcareous rock with low coral cover were more suitable for octocorals than for scleractinian recruits, suggesting that the decline in scleractinian corals is facilitating the recruitment of octocorals on contemporary Caribbean reefs. However, the relative abundances of the taxa were independent of the amount of suitable habitat on the reef, emphasizing that niche processes alone do not predict recruitment rates.     

Biogeographic context is related to local scale tree demography,co-occurrence and functional differentiation

Identifying the drivers of community structure and dynamics is a major pursuit in ecology. Emphasis is typically placed on the importance of local scale interactions when attempting to explain these fundamental ecological patterns. However, regional scale phenomena are also important predictors. The importance of regional scale context should be more evident in assemblages where multiple species are close to their range margins. Here, we test the importance of regional scale context using data from a temperate forest plot that contains two species groups – one near its northern range limit and one near its southern range limit. We show the proximity of species to their southern or northern range margins is linked to local scale co-occurrence, similarity in gene expression responses to a key environmental driver, demographic performance and inter-specific variation in conspecific negative density dependence. In sum, many of the key local scale patterns and processes of interest to community ecologists are linked to biogeographic context that is frequently ignored.     

Avian diversity and function across the world's most populous cities

Understanding the composition of urban wildlife communities is crucial to promote biodiversity, ecosystem function and links between nature and people. Using crowdsourced data from over five million eBird checklists, we examined the influence of urban characteristics on avian richness and function at 8443 sites within and across 137 global cities. Under half of the species from regional pools were recorded in cities, and we found a significant phylogenetic signal for urban tolerance. Site-level avian richness was positively influenced by the extent of open forest, cultivation and wetlands and avian functional diversity by wetlands. Functional diversity co-declined with richness, but groups including granivores and aquatic birds occurred even at species-poor sites. Cities in arid areas held a higher percentage of regional species richness. Our results indicate commonalities in the influence of habitat on richness and function, as well as lower niche availability, and phylogenetic diversity across the world's cities.     

Microhabitat use by marsh-edge fishes in a Louisiana estuary

Synopsis We used a drop sampler to characterize use of the marsh-edge ecotone by small fishes along two transects running inland from the Gulf of Mexico for ca. 25 km in Louisiana's Barataria-Caminada Bay System. Monthly sampling was stratified among upper, middle, and lower reaches and within reaches to characterize fish responses to salinity, depth, distance from shore, substrate, dissolved oxygen concentration, temperature, turbidity, velocity, and emergent stem density. In 681 quantitative samples, covering 658 m², collected between October 1987 and October 1989, we collected 57 fish species and 16 864 individuals, primarily larvae and juveniles. The 15 most abundant fishes, comprising 97.7% of all individuals, were concentrated near the marsh edge (i.e., 0 to 1.25 m distance). Some significant differences within species for seasonal variables (e.g., temperature and dissolved oxygen concentration) reflected the ephemeral duration of early life history stages. Other differences reflected ontogenetic microhabitat shifts (e.g., depth and distance from shore). Within ecological groups, characterized as demersal residents, nektonic transients, and demersal transients, spatial and temporal segregation reflected the particular habitat requirements of each species. In a principal component analysis of microhabitat use, the first three components were interpreted as seasonal, depth-and-distance, and salinity axes, respectively. The array of species and size classes in principal component space reflected the complex dimensionality of microhabitat use. The high density of fish larvae and juveniles near the marsh edge confirmed the importance of the marsh-edge ecotone as a nursery for many estuarine-dependent fishes.     

Vegetation change in acidic dry grasslands in Moravia (Czech Republic) over three decades: Slow decrease in habitat quality after grazing cessation

Aims

Shallow soils on acidic bedrock in dry areas of Central Europe support dry grasslands and heathlands that were formerly used as extensive pastures. These habitats are of high conservation value, but their abandonment in the 20th century triggered slow natural succession that poses a threat to specialized plant species. We asked how this vegetation and its plant diversity have changed over the past three decades and whether protected areas have positively affected habitat quality.

Location

Southwestern and central Moravia, Czech Republic.

Methods

In 2018–2019, we resurveyed 94 vegetation plots first sampled in 1986–1991 at 47 acidic dry grassland and heathland sites. We compared the number of all vascular plant species, Red List species and alien species per plot using parametric and non-parametric tests, life-form spectra using the chi-square test, species composition using detrended correspondence analysis, and indicator values using a permutation test. We also compared these changes between sites within and outside protected areas.

Results

Vegetation changes over the past three decades have been relatively small. However, we detected a decrease in total species richness, the number of Red List species and the number of characteristic species of dry grasslands. Neophytes were infrequent, while archaeophytes increased slightly. The competitive tall grass Arrhenatherum elatius, annual species and young woody plants increased in abundance or newly established at many sites. Indicator values did not change except for a slight increase in nutrient values. These negative trends occurred both within and outside protected areas but were more pronounced outside.

Conclusions

Formerly grazed acidic dry grasslands and heathlands in Moravia are slowly losing habitat specialists, including threatened plant species, and are increasingly dominated by Arrhenatherum elatius. Conservation management, especially cutting in protected areas, slows down the negative trends of decline in plant diversity and habitat quality but is insufficient to halt these processes completely.     

Coevolution of species colonisation rates controls food-chain length in spatially structured food webs

How the complexity of food webs depends on environmental variables is a long-standing ecological question. It is unclear though how food-chain length should vary with adaptive evolution of the constitutive species. Here we model the evolution of species colonisation rates and its consequences on occupancies and food-chain length in metacommunities. When colonisation rates can evolve, longer food-chains can persist. Extinction, perturbation and habitat loss all affect evolutionarily stable colonisation rates, but the strength of the competition-colonisation trade-off has a major role: weaker trade-offs yield longer chains. Although such eco-evo dynamics partly alleviates the spatial constraint on food-chain length, it is no magic bullet: the highest, most vulnerable, trophic levels are also those that least benefit from evolution. We provide qualitative predictions regarding how trait evolution affects the response of communities to disturbance and habitat loss. This highlights the importance of eco-evolutionary dynamics at metacommunity level in determining food-chain length.     

Determining desirable levels of ecosystem services per capita

Ecosystem services are the numerous, essential processes that natural ecosystems provide free to human societies. Examples include the maintenance of breathable air; the movement, storage, and purification of water; the breakdown of wastes; and the provision of food, building materials, and medicines. However, the exponential increases in human population and concomitant environmental destruction make it likely that the level of ecosystem services available per capita will decline. There are three possible scenarios. First, if present practices continue, ecosystem services per capita will surely decline. Second, if a no-net-loss policy is implemented for habitats and species, ecosystem services per capita will still decline due to increases in human population, but the declines will be less precipitous. Third, if habitat is restored (including concomitant ecosystem services) at a rate exceeding that of destruction, then, perhaps the current level of ecosystem services per capita can be maintained, or even expanded to provide increased levels of ecosystem services per capita to more of the world's people.     

Restoration management of abandoned chalk grassland in the Netherlands

After abandonment of chalk grassland in the Netherlands, Brachypodium pinnatum had become very dominant and this resulted in a dramatic decrease of plant diversity. Restoration of these abandoned sites is important, because of its former high diversity with many nationally endangered species. To restore the chalk grassland vegetation, the impact of the introduction of different experimental cutting regimes was investigated during three years. The thick litter layer and the dominance of Brachypodium was strongly reduced after introduction of all cutting regimes. In all cutting treatments forb phytomass increased considerably, especially in the twice-a-year cutting vegetation, where the forb phytomass became as high as that of Brachypodium. Phanerogamic species diversity was stimulated in all cutting regimes. Especially the number of short-lived forbs. with a persistent seed bank, increased markedly in the twice-a-year cutting treatment. It is concluded that cutting the vegetation twice is adequate to reduce the negative effects of the thick litter layer and the abundant growth of Brachypodium. It creates an appropriate starting point for more detinite management, whether mowing or grazing. However, the restoration of a more complete species assortment strongly depends on the re-invasion possibilities of these species.     

Upper thermal limits predict herpetofaunal responses to forest edge and cover

Amphibians and reptiles are sensitive to changes in the thermal environment, which varies considerably in human-modified landscapes. Although it is known that thermal traits of species influence their distribution in modified landscapes, how herpetofauna respond specifically to shifts in ambient temperature along forest edges remains unclear. This may be because most studies focus on local-scale metrics of edge exposure, which only account for a single edge or habitat patch. We predicted that accounting for the combined effect of multiple habitat edges in a landscape would best explain herpetofaunal response to thermally mediated edge effects. We (1) surveyed herpetofauna at two lowland, fragmented forest sites in central Colombia, (2) measured the critical thermal maximum (CT_max) of the species sampled, (3) measured their edge exposure at both local and landscape scales, and (4) created a thermal profile of the landscape itself. We found that species with low CT_max occurred both further from forest edges and in areas of denser vegetation, but were unaffected by the landscape-scale configuration of habitat edges. Variation in the thermal landscape was driven primarily by changes in vegetation density. Our results suggest that amphibians and reptiles with low CT_max are limited by both canopy gaps and proximity to edge, making them especially vulnerable to human modification of tropical forest. Abstract in Spanish is available with online material.