Cervex brush versus vaginal–cervical–endocervical (VCE) triple smear techniques in cervical sampling

Cervex brush versus vaginal–cervical–endocervical (VCE) triple smear techniques in cervical sampling
Cervex brush sampling was compared with the conventional triple vaginal–cervical–endocervical (VCE) smear technique. Nine hundred and fifty‐nine Cervex brush smears and 1064 VCE smears were studied. All smears with both methods were technically satisfactory for evaluation. Endocervical cells were found in 90.7% and metaplastic cells in 73.3% of Cervex brush samples and in 92.5% and 64.1% of VCE samples, respectively. There were significantly more metaplastic cells in smears from premenopausal women. Low grade squamous intraepithelial lesion (SIL) was found in three Cervex brush samples and in two VCE samples. High‐grade SIL was found only in one Cervex brush sample. Benign cellular changes were found in 142 Cervex brush samples and in 144 VCE samples. Sampling with the Cervex brush is efficient, simple and fast and gives high quality cervical smears for cytological evaluation.     

Observations on the Staining of Corynebacterium Diphtheriae

Albert's method, of staining diphtheria cultures consists of staining a fixed smear for one minute (some laboratories stain for five minutes) with a solution containing toluidine blue and malachite (or methyl) green, washing with water, and applying Albert's iodine for one minute. This procedure is discussed and criticized, and in addition the mechanism of the stain is elucidated. Also, the procedure which involves staining a fixed smear for one minute with Loeffler's alkaline methylene blue solution is discussed and criticized.

To overcome the objections to the above staining methods, a different method is proposed. This consists of staining a fixed smear with an acid solution of toluidine blue, washing with water, applying Albert's iodine for one minute, washing with water, and finally applying a safranin solution for 15-20 seconds. The theoretical basis for this method is presented.     

Sampling strategy optimization to increase statistical power in landscape genomics: A simulation‐based approach

An increasing number of studies are using landscape genomics to investigate local adaptation in wild and domestic populations. Implementation of this approach requires the sampling phase to consider the complexity of environmental settings and the burden of logistical constraints. These important aspects are often underestimated in the literature dedicated to sampling strategies. In this study, we computed simulated genomic data sets to run against actual environmental data in order to trial landscape genomics experiments under distinct sampling strategies. These strategies differed by design approach (to enhance environmental and/or geographical representativeness at study sites), number of sampling locations and sample sizes. We then evaluated how these elements affected statistical performances (power and false discoveries) under two antithetical demographic scenarios. Our results highlight the importance of selecting an appropriate sample size, which should be modified based on the demographic characteristics of the studied population. For species with limited dispersal, sample sizes above 200 units are generally sufficient to detect most adaptive signals, while in random mating populations this threshold should be increased to 400 units. Furthermore, we describe a design approach that maximizes both environmental and geographical representativeness of sampling sites and show how it systematically outperforms random or regular sampling schemes. Finally, we show that although having more sampling locations (between 40 and 50 sites) increase statistical power and reduce false discovery rate, similar results can be achieved with a moderate number of sites (20 sites). Overall, this study provides valuable guidelines for optimizing sampling strategies for landscape genomics experiments.     

An inflatable minirhizotron system for root observations with improved soil/tube contact

Commonly used minirhizotrons consisting of a transparent tube inserted into the soil seldom attain good contact between the tube and the soil, which leads to root growth occurring in a gap rather than in the soil. A new system is described involving an inflatable flexible rubber wall, made from a modified motorcycle tube. Pressure ensures a proper tube/soil contact so that the environmental circumstances for root growth along the tube more closely correspond to those in the undisturbed soil. Before the endoscope slide is introduced into the minirhizotron for taking pictures, the inflatable tube is removed, so that there is no-often opaque-wall between the endoscope and the roots. This improves the picture quality and facilitates the analysis of root images.     

不同抗性小麦品种上麦红吸浆虫幼虫的空间分布型与理论抽样数

【目的】为了解小麦品种抗性对麦红吸浆虫Sitodiplosis mosellana(Géhin)幼虫在麦穗上空间分布型的影响,为科学调查提供合理的抽样依据。【方法】2015年5月采用剥穗调查法对陕西省周至县试验田种植的4个抗虫和4个感虫小麦品种麦红吸浆虫幼虫危害进行调查,应用6种聚集度指标和Iwao M*?m回归法综合分析了幼虫在抗性不同小麦品种上的的空间分布结构。【结果】幼虫在抗、感小麦品种整穗及麦穗上、中、下部位上空间分布型一致,均呈聚集分布,但在抗虫品种上聚集强度大于感虫品种;抗、感小麦品种上分布的基本成分均为个体群,个体间相互吸引。聚集均数λ分析表明,幼虫在抗性较强品种上的聚集主要由小麦穗部化学物质和形态结构等环境因素引起,感虫品种上则由环境因素和成虫的产卵习性共同作用所致。幼虫在抗、感小麦品种上的发生趋势一致,均是上部发生最重,中部次之,下部最轻。根据Iwao回归法中的分布型参数,确立了幼虫在不同虫口密度和允许误差条件下的理论抽样数。【结论】麦红吸浆虫幼虫在抗性不同小麦品种上均呈聚集分布,调查时应根据当地栽培品种平均虫口密度选择适宜的抽样数量。     

嵌套式回归建立树木生物量模型

 该文介绍了一种建立树木生物量模型的简单快速方法——嵌套式回归。基本原理是以枝轴为基本单位, 逐级拟合。过程是把枝条分解成枝轴, 从枝轴到枝条, 再到单株, 拟合不同层次或尺度的生物量模型。建立枝轴生物量方程, 估计各级枝轴生物量, 将枝轴生物量(实测值或模拟值)总和起来便得到枝条生物量。由于样本单元之间有包含关系, 实际测定的样本很小, 具有快速实用的特点。检验结果显示, 模型预测值和实测值具有较高的一致性。     

Domain motions of hyaluronan lyase underlying processive hyaluronan translocation

Hyaluronan lyase (Hyal) is a surface enzyme occurring in many bacterial organisms including members of Streptococcus species. Streptococcal Hyal primarily degrades hyaluronan‐substrate (HA) of the extracellular matrix. This degradation appears to facilitate the spread of this bacterium throughout host tissues. Unlike purely endolytic degradation of its other substrates, unsulfated chondroitin or some chondroitin sulfates, the degradation of HA by Hyal proceeds by processive exolytic cleavage of one disaccharide at a time following an initial endolytic cut. Molecular dynamics (MD) studies of Hyal from Streptococcus pneumoniae are presented that address the enzyme's molecular mechanism of action and the role of domain motions for processive functionality. The analysis of extensive sub‐microsecond MD simulations of this enzyme action on HA‐substrates of different lengths and the connection between the domain dynamics of Hyal and the translocation of the HA‐substrate reveals that opening/closing and twisting domain motions of the Hyal are intimately linked to processive HA degradation. Enforced simulations confirmed this finding as the domain motions in SpnHyal were found to be induced by enforced substrate translocation. These results establish the dynamic interplay between Hyal flexibility and substrate translocation and provide insight into the processive mechanism of Hyal. Proteins 2009. © 2008 Wiley‐Liss, Inc.     

Microbial metabolomics: past,present and future methodologies

Microbial metabolomics has received much attention in recent years mainly because it supports and complements a wide range of microbial research areas from new drug discovery efforts to metabolic engineering. Broadly, the term metabolomics refers to the comprehensive (qualitative and quantitative) analysis of the complete set of all low molecular weight metabolites present in and around growing cells at a given time during their growth or production cycle. This review focuses on the past, current and future development of various experimental protocols in the rapid developing area of metabolomics in the ongoing quest to reliably quantify microbial metabolites formed under defined physiological conditions. These developments range from rapid sample collection, instant quenching of microbial metabolic activity, extraction of the relevant intracellular metabolites as well as quantification of these metabolites using enzyme based and or modern high tech hyphenated analytical protocols, mainly chromatographic techniques coupled to mass spectrometry (LC-MSⁿ, GC-MSⁿ, CE-MSⁿ), where n indicates the number of tandem mass spectrometry, and nuclear magnetic resonance spectroscopy (NMR).     

Evaluation of sticky light traps for sampling mosquito larvae

Very simply constructed aquatic sticky light traps employing a chemical solution emitting a bright light attracted large numbers of all larval instars, but few pupae of Aedes cantans in trials in England. During April numbers of larvae per trap ranged from 73±14.2 to 163±19.9, whereas dipping with a ladle yielded only 6.9±5.5 to 11.8±7.7 larvae/dip. The traps were also effective in sampling larvae of Culiseta morsitans and in Sierra Leone larvae of Aedes aegypti. It was concluded that sticky light traps could be valuable in sampling relative numbers of mosquito larvae and merited further evaluation.

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Résumé Des pièges adhésifs lumineux faciles à réaliser sont construits pour les captures des larves de moustiques. Ils sont formés de paires de boîtes de Pétri en plastique contenant une solution émettrice de lumière provenant de bâtons lumineux chimiques Cyalume^®. Chaque piège est recouvert d'une feuille de plastique de 16×16 cm enduite d'une substance qui reste adhésive sous l'eau. Les larves de moustiques attirées vers la source lumineuse viennent se coller à la feuille adhésive.Ces pièges ont été utilisés avec succès en Angleterre pour l'échantillonnage de tous les stades larvaires d'Aedes cantans, mais pas avec le même efficacité pour les nymphes. Des tests plus restreints ont montré que la technique était également utilisable pour les larves de Culiseta morsitans. Les nombres moyens d'A. cantans capturés pendant une piode de 12 h (73±14,2–163±19,9) étaient supérieux à ceux obtenus en plongeant une louche (6,9±5,5–11,8±7,7). En utilisant les pièges adhésifs lumineux, les captures moyennes de C. morsitans étaient également supérieures (12,6±4,7–35,8±8,9) contre (5,7±6,1–8,9±7,8) avec la méthode de la louche.En Sierra Leone, des stades larvaires immatures d'A. aegypti se développant dans des containers de stockage d'eau ont également pu être capturés à l'aide de ces pièges.Bien qu'une évaluation plus poussée soit encore nécessaire, il ne fait aucun doute que ces pièges adhésifs lumineux aient un intérêt considérable pour l'échantillonnage larvaire dans les sites inaccessibles, tels que les trous d'arbres ou les trous de crabes, où les méthodes d'échantillonage classiques sont souvent d'un emploi difficile.

     

海南石梅湾青皮林最小取样面积与物种多样性研究

石梅湾海岸青皮(Vatica hainanensis)林是海南独特的雨林群落之一。本文选用8种“种-面积渐近线”对该群落的最小取样面积进行了拟合研究。结果表明,其中5条曲线的R^2大于0．97,拟合状况很好,但所得出的最小取样面积各不相同。进一步经过“重要值-面积曲线”的群落特征分析,确认群落的最小取样面积只有800m^2。石梅湾青皮林最小取样面积比海南其他类型雨林、滇南热带雨林、东南亚热带雨林以及非洲雨林都要小。通过对1000m^2样地的物种多样性分析,结果表明：在垂直结构上,石梅湾青皮林B层乔木的Gleason指数大于A层乔木,和海南山地雨林的情况不同。海岸青皮林为物种多样性不高的单优林,群落的物种多样性、均匀度远小于海南其他类型的山地雨林与混合青皮林;在海岸青皮林群落内,青皮的相对密度、相对优势度、重要值大大高于其他物种。此研究表明：海南热带雨林同样存在物种多样性不高、单优特征显著的顶极群落;海南海岸青皮林是迄今为止热带雨林取样面积最小的森林类型。