A moorable,automated plankton sampler: comments on Lewis & Heckl (1991)

Comments on a recently described moorable, automated plankton sampler are given, mainly because it was designed to capture large zooplankton. However, the need for automatic devices for sampling phyto- and zooplankton is stressed. A new design for such a device is presented. A preliminary test was made using standard continuous-flow (auto-analyser) equipment, a cultured flagellate and formalin as a fixative.     

Utilization of autochthonous macroinvertebrate drift by a pool fish community in a woodland stream

Qualitative and quantitative drift data were collected simultaneously above and below a pool both before and after the pool was heavily electrofished. These data revealed no significant difference between drift organism densities (#/m³) above or below the pool before or after fish collection. Qualitative and quantitative fish gut analyses suggest that the sunfishes Lepomis megalotis, L. macrochirus and L. cyanellus may be feeding on drifting invertebrates as these organisms comprised 58%, 37% and 35% gut volume, respectively. A design for a long-term drift net apparatus is presented.     

Bayesian analysis and model selection for interval-censored survival data

Interval-censored data occur in survival analysis when the survival time of each patient is only known to be within an interval and these censoring intervals differ from patient to patient. For such data, we present some Bayesian discretized semiparametric models, incorporating proportional and nonproportional hazards structures, along with associated statistical analyses and tools for model selection using sampling-based methods. The scope of these methodologies is illustrated through a reanalysis of a breast cancer data set (Finkelstein, 1986, Biometrics 42, 845-854) to test whether the effect of covariate on survival changes over time.     

Monte Carlo EM for missing covariates in parametric regression models

We propose a method for estimating parameters for general parametric regression models with an arbitrary number of missing covariates. We allow any pattern of missing data and assume that the missing data mechanism is ignorable throughout. When the missing covariates are categorical, a useful technique for obtaining parameter estimates is the EM algorithm by the method of weights proposed in Ibrahim (1990, Journal of the American Statistical Association 85, 765-769). We extend this method to continuous or mixed categorical and continuous covariates, and for arbitrary parametric regression models, by adapting a Monte Carlo version of the EM algorithm as discussed by Wei and Tanner (1990, Journal of the American Statistical Association 85, 699-704). In addition, we discuss the Gibbs sampler for sampling from the conditional distribution of the missing covariates given the observed data and show that the appropriate complete conditionals are log-concave. The log-concavity property of the conditional distributions will facilitate a straightforward implementation of the Gibbs sampler via the adaptive rejection algorithm of Gilks and Wild (1992, Applied Statistics 41, 337-348). We assume the model for the response given the covariates is an arbitrary parametric regression model, such as a generalized linear model, a parametric survival model, or a nonlinear model. We model the marginal distribution of the covariates as a product of one-dimensional conditional distributions. This allows us a great deal of flexibility in modeling the distribution of the covariates and reduces the number of nuisance parameters that are introduced in the E-step. We present examples involving both simulated and real data.     

Effects of early embryonic exposure to genistein on male copulatory behavior and vasotocin system of Japanese quail

Genistein is a phytoestrogen, particularly abundant in soybeans that can bind estrogen receptors and sex hormone binding proteins, exerting both estrogenic and antiestrogenic activity. In this study we used the Japanese quail embryo as a test end-point to investigate the effects of early embryonic exposure to genistein on male copulatory behavior and on vasotocin parvocellular system. Both differentiate by the organizational effects of estradiol during development and may therefore represent an optimal model to study the effects of xenoestrogens. We injected two doses of genistein (100 and 1000 microg) into the yolk of 3-day-old Japanese quail eggs. Other eggs were treated with either 25 microg of estradiol benzoate or sesame oil as positive and negative controls. At the age of 6 weeks, behavioral tests revealed a significant decrease of all aspects of copulatory behavior (in comparison to the control group) in estradiol-treated birds. In contrast, genistein-treated animals demonstrated various degrees of decrease in the mean frequencies of some aspects of the sexual behavior. The computerized analysis of vasotocin innervation in medial preoptic, stria terminalis and lateral septum nuclei revealed a statistically significant decreased immunoreactivity in treated animals compared to control ones. These results demonstrate that genistein, similarly to estradiol, has an organizational effect on quail parvocellular vasotocin system and on copulatory behavior. In conclusion, present results confirm, in this avian model, that embryonic exposure to phytoestrogens may have life-long effects on sexual differentiation of brain structures and behaviors.     

Airborne pollen sampling in a wildlife reserve in the south of Buenos Aires province,Argentina

The objective of this project was to study the pollen spectrum of the Marahué Wildlife Reserve (Central Argentina), the quantity and quality of airborne pollen grains, and to evaluate the contribution of outside sources, to protect a natural habitat with xerophytic shrub vegetation (“monte”) (the term “monte” is used for the dominant xerophytic shrub vegetation in the “partido” of Villarino) approximately 90 km south of Bahía Blanca. Sampling was performed weekly throughout a whole calendar year (January–December, 2003) using a volumetric impact sampler. Observations of flowering in the field were performed at the same time as the aerial sampling. Herbarium specimens were collected to make pollen collections of the species found in the study area, for reference purposes. The most abundant pollen types were Poaceae (31.3% total annual pollen), Amaranthus/Chenopodiaceae (25.3%), Eucalyptus (5%), Brassicaceae (3.9%), and Plantago (3.9%). This study showed the dispersion dynamics of pollen grains from characteristic species of the “partido” (the province of Buenos Aires is divided into partidos which are roughly equivalent to counties) of Villarino, the exotic flora of the surrounding area, and the pollen types from outside the region.

A new adhesive for airborne pollen sampling

There is a spreading interest to establish networks of information exchange on aerobiological data in order to carry out comparative studies of the biological air content of different regions. For this kind of study, it is of primary importance that the methods used are being standardized. Since most national networks are now made of comparable Hirst-type samplers, the second most important factor to consider will be the efficiency of the adhesive used on the Melinex tape. In this study, we report conclusive results using a double-side self adhesive acrylic tape (Scotch 3M 9425). Our results show higher capture efficiency (+20%) for the 3M tape as compared to the glycerine/gelatine coating traditionally used in Montréal for the capture of airborne pollen on the Melinex tape of Hirst samplers.     

A new sampler for collecting invertebrates in submerged vegetation

A new sampler is described that can rapidly enclose a specific volume of water at a given depth, including submerged macrophytes and associated invertebrates. The sampler is a tong-shaped instrument consisting of two metal rods connected by a flexible joint. At the end of each arm is a metal cylinder (diameter 10 cm); one end of the cylinder has a sharpened edge and the other is equipped with a net. Powerful metal springs force the cylinders together at high speed, and macrophytes are enclosed in the nets. The sampler is suitable for studying vertical and horizontal distribution of invertebrates, even fast-moving taxa, within submerged vegetation. The device causes little disturbance of the vegetation, hence it is also suitable for repeated sampling within mesocosms.     

Mixture Hazard Models for Lifetime Data

We propose a general family of mixture hazard models to analyze lifetime data associated with bathtub and multimodal hazard functions. With this model we have a great flexibility for fitting lifetime data. Its version with covariates has the proportional hazard and the accelerated failure time models as special cases. A Bayesian analysis is presented for the model using informative priors, using sampling‐based approaches to perform the Bayesian computations. A real example with a medical data illustrates the methodology.