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111.
Comparison of the complete human genome sequence to one of its closest relatives, the chimpanzee genome, provides a unique opportunity for exploring recent evolutionary events affecting the microsatellites in these species. A simple assumption on microsatellite distribution is that the total length of perfect repeats is constant compared to that of imperfect ones regardless of the repeat sequence. In this paper, we show that this is valid for most of the chimpanzee genome but not for a number of human chromosomes. Our results suggest accelerated evolution of microsatellites in the human genome relative to the chimpanzee lineage. 相似文献
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Burnett KG Bain LJ Baldwin WS Callard GV Cohen S Di Giulio RT Evans DH Gómez-Chiarri M Hahn ME Hoover CA Karchner SI Katoh F Maclatchy DL Marshall WS Meyer JN Nacci DE Oleksiak MF Rees BB Singer TD Stegeman JJ Towle DW Van Veld PA Vogelbein WK Whitehead A Winn RN Crawford DL 《Comparative biochemistry and physiology. Part D, Genomics & proteomics》2007,2(4):257-286
A strong foundation of basic and applied research documents that the estuarine fish Fundulus heteroclitus and related species are unique laboratory and field models for understanding how individuals and populations interact with their environment. In this paper we summarize an extensive body of work examining the adaptive responses of Fundulus species to environmental conditions, and describe how this research has contributed importantly to our understanding of physiology, gene regulation, toxicology, and ecological and evolutionary genetics of teleosts and other vertebrates. These explorations have reached a critical juncture at which advancement is hindered by the lack of genomic resources for these species. We suggest that a more complete genomics toolbox for F. heteroclitus and related species will permit researchers to exploit the power of this model organism to rapidly advance our understanding of fundamental biological and pathological mechanisms among vertebrates, as well as ecological strategies and evolutionary processes common to all living organisms. 相似文献
113.
Susanna-Assunta Sansone Daniel Schober Helen J. Atherton Oliver Fiehn Helen Jenkins Philippe Rocca-Serra Denis V. Rubtsov Irena Spasic Larisa Soldatova Chris Taylor Andy Tseng Mark R. Viant 《Metabolomics : Official journal of the Metabolomic Society》2007,3(3):249-256
In this article we present the activities of the Ontology Working Group (OWG) under the Metabolomics Standards Initiative
(MSI) umbrella. Our endeavour aims to synergise the work of several communities, where independent activities are underway
to develop terminologies and databases for metabolomics investigations. We have joined forces to rise to the challenges associated
with interpreting and integrating experimental process and data across disparate sources (software and databases, private
and public). Our focus is to support the activities of the other MSI working groups by developing a common semantic framework
to enable metabolomics-user communities to consistently annotate the experimental process and to enable meaningful exchange
of datasets. Our work is accessible via a public webpage and a draft ontology has been posted under the Open Biological Ontology
umbrella. At the very outset, we have agreed to minimize duplications across omics domains through extensive liaisons with
other communities under the OBO Foundry. This is work in progress and we welcome new participants willing to volunteer their
time and expertise to this open effort.
See the MSI Ontology Working Group website for a complete list of members and contributors. Web URL: 相似文献
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Valerie Diane V. Valeriano Ju Kyoung Oh Bernadette B. Bagon Heebal Kim Dae-Kyung Kang 《Genomics》2019,111(1):24-33
Lactobacillus mucosae is currently of interest as putative probiotics due to their metabolic capabilities and ability to colonize host mucosal niches. L. mucosae LM1 has been studied in its functions in cell adhesion and pathogen inhibition, etc. It demonstrated unique abilities to use energy from carbohydrate and non-carbohydrate sources. Due to these functions, we report the first complete genome sequence of an L. mucosae strain, L. mucosae LM1. Analysis of the pan-genome in comparison with closely-related Lactobacillus species identified a complete glycogen metabolism pathway, as well as folate biosynthesis, complementing previous proteomic data on the LM1 strain. It also revealed common and unique niche-adaptation genes among the various L. mucosae strains. The aim of this study was to derive genomic information that would reveal the probable mechanisms underlying the probiotic effect of L. mucosae LM1, and provide a better understanding of the nature of L. mucosae sp. 相似文献