APOBEC3B Nuclear Localization Requires Two Distinct N-Terminal Domain Surfaces

The APOBEC3 family of cytosine deaminases catalyzes the conversion of cytosines-to-uracils in single-stranded DNA. Traditionally, these enzymes are associated with antiviral immunity and restriction of DNA-based pathogens. However, a role for these enzymes in tumor evolution and metastatic disease has also become evident. The primary APOBEC3 candidate in cancer mutagenesis is APOBEC3B (A3B) for three reasons: (1) A3B mRNA is upregulated in several different cancers, (2) A3B expression and mutational loads correlate with poor clinical outcomes, and (3) A3B is the only family member known to be constitutively nuclear. Previous studies have mapped non-canonical A3B nuclear localization determinants to a single surface-exposed patch within the N-terminal domain (NTD). Here, we show that A3B has an additional, distinct, surface-exposed NTD region that contributes to nuclear localization. Disruption of residues within the first 30 amino acids of A3B (import surface 1) or loop 5/α-helix 3 (import surface 2) completely abolish nuclear localization. These import determinants also graft into NTDs of related family members and mediate re-localization from cell-wide-to-nucleus or cytoplasm-to-nucleus. These findings demonstrate that both sets of residues are required for non-canonical A3B nuclear localization and describe unique surfaces that may serve as novel therapeutic targets.     

Molecular characterization and genetic mapping of DNA sequences encoding the Type I chlorophyll a/b-binding polypeptide of photosystem I in Lycopersicon esculentum (tomato)

We report the isolation and characterization of a tomato nuclear gene encoding a chlorophyll a/b-binding (CAB) protein of photosystem I (PSI). The coding nucleotide sequence of the gene, designated Cab-6B, is different at eight positions from that of a previously isolated cDNA clone derived from the Cab-6A gene, but the two genes encode identical proteins. Sequence comparison with the cDNA clone revealed the presence of three short introns in Cab-6B. Genetic mapping experiments demonstrate that Cab-6A and Cab-6B are tightly linked and reside on chromosome 5, but the physical distance between the two genes is at least 7 kilobases. Cab-6A and Cab-6B have been designated Type I PSI CAB genes. They are the only two genes of this branch of the CAB gene family in the tomato genome, and they show substantial divergence to the genes encoding CAB polypeptides of photosystem II. The Type I PSI CAB genes, like the genes encoding PSII CAB proteins, are highly expressed in illuminated leaf tissue and to a lesser extent in other green organs.     

Genome Instability in interspecific cell hybrids II. Aminopterin resistance and gene amplification in lines arising from fusions of cells from divergent mammalian species

In order to investigate instances of genetic instability in divergent cell hybrids, we studied several RAT-resistant colonies recovered from fusions between HPRT or TK-deficient rodent cells and marsupial or monotreme cells. Most of these colonies proved to lack HPRT or TK activity and to have survived by acquiring resistance to aminopterin; such aminopterin-resistant lines were never recovered from parent cells subjected to HAT selection. Two of the aminopterin-resistant hybrids over-produced DHFR, and possessed either double minutes or an abnormally banded region, the cytological manifestations of gene amplification. Selection in higher aminopterin concentrations yielded a highly resistant line with 100X wild-type DHFR activity and a large homogeneously staining region. We suggest that interspecific cell hybrids are predisposed to gene amplification and may also show many other types of genetic and chromosomal instability, possibly thein vitro equivalent of the “genomic shock” phenomena described for interstrain or interspecies hybrids of plants or animals. This paper, no. II in a series by these authors, reached the Editorial Office on the date given, although it had been mailed earlier than paper no. III; the latter paper also appears in this number — Eds.     

Evolutionary rates: effects of stress upon recombination

There is increasing evidence that ecological variables involving stress are important in determining evolutionary rates. This paper incorporates recombination into this scenario.
In Drosophila melanogaster , recombination increases at developmental temperatures above and below normal culture temperatures, giving a U-shaped curve which is most pronounced in centromeric regions; however, at near lethal temperature extremes there is some evidence for a fall in recombination. More limited data from other organisms are generally consistent with this conclusion. Nutritional stress in the form of starvation increases recombination in D. melanogaster , and behavioural stress has been found to increase recombination in male mice.
In natural populations recombination is under complex genetic control analogous to other quantitative traits. In D. melanogaster in a novel environment, there is evidence that additive genetic variability for recombination is higher than in a standard laboratory environment. During selection in populations exposed to extreme stress increased recombination may occur; this implies that in marginal (stressful) habitats, variability generated by recombination may increase.
In D. melanogaster , structural heterozygosity due to inversions in one part of the genome tends to increase recombination in the remainder of the genome in a qualitatively similar manner to, and cumulative with, direct environmental effects especially temperature. Substantial recombination should be inducible under combinations of karyotypes and environments deviating from existing circumstances, especially if the suggestion that effects are often synergistic due to a dependence upon available energy levels can be confirmed.     

Rhizobium phaseoli: A molecular genetics view

We have used molecular genetics techniques to analyze the structural and functional organization of genetic information ofRhizobium phaseoli, the symbiont of the common bean plantPhaseolus vulgaris. As in otherRhizobium species, the genome consists of the chromosome and plasmids of high molecular weight. Symbiotic determinants, nitrogen fixation genes as well as nodulation genes, are localized on a single replicon, the symbiotic (sym) plasmid. Thesym plasmid of differentR. phaseoli strains was transferred to anAgrobacterium tumefaciens strain cured of its native plasmids. In all cases, Agrobacterium transconjugants able to nodulate bean plants were obtained. Some of the transconjugants had the capacity to elicit an effective symbiosis. The genome ofR. phaseoli is complex, containing a large amount of reiterated DNA sequences. In mostR. pahseoli strains one of such reiterated DNA families corresponds to the nitrogenase structural genes (nif genes). A functional analysis of these genes suggested that the presence of reiteratednif genesis is related to the capacity of fixing atmospheric nitrogen in the symbiotic state. The presence of several repeated sequences in the genome might provide sites for recombination, resulting in genomic rearrangements. By analyzing direct descendants of a single cell in the laboratory, evidence of frequent genomic rearrangements inR. phaseoli was found. We propose that genomic rearrangements constitute the molecular basis of the frequent variability and loss of symbiotic properties in different Rhizobium strains.     

Genomic structure and sequence variation of a 3.3-kb repeat DNA element of the kangaroo rat, Dipodomys ordii

The genomic structure and sequence variation of a 3.3-kb repeat DNA element, representing 5% of the genome of the kangaroo rat Dipodomys ordii, has been investigated. Most of the repeats are arranged in tandem arrays of 50 kb or more. Thirteen randomly selected genomic clones have been mapped with twelve restriction enzymes. The frequency of sequence divergence in the genomic clones is 0.5%. The clone maps and the genomic structure studies have permitted the characterization of a number of variant members of the 3.3-kb repeat family. The genomic organization of the repeat resembles that for repeated DNAs found in large tandem arrays or satellites.