Responses of a wetland ecosystem to the controlled introduction of invasive fish

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Polyunsaturated fatty acids in stream food webs – high dissimilarity among producers and consumers

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Depth distribution of the native freshwater mussel (Echyridella menziesii) in warm monomictic lakes: Towards a general model for mussels in lakes

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Modified low‐salt CTAB extraction of high‐quality DNA from contaminant‐rich tissues

The increasing use of high‐throughput sequencing platforms has made the isolation of pure, high molecular weight DNA a primary concern for studies of a diverse range of organisms. Purification of DNA remains a significant challenge in many tissue and sample types due to various organic and inorganic molecules that coprecipitate with nucleic acids. Molluscs, for example, contain high concentrations of polysaccharides which often coprecipitate with DNA and can inhibit downstream enzymatic reactions. We modified a low‐salt CTAB (MoLSC) extraction protocol to accommodate contaminant‐rich animal tissues and compared this method to a standard CTAB extraction protocol and two commercially available animal tissue DNA extraction kits using oyster adductor muscle. Comparisons of purity and molecular integrity showed that our in‐house protocol yielded genomic DNA generally free of contaminants and shearing, whereas the traditional CTAB method and some of the commercial kits yielded DNA unsuitable for some applications of massively parallel sequencing. Our open‐source MoLSC protocol provides a cost‐effective, scalable, alternative DNA extraction method that can be easily optimized and adapted for sequencing applications in other contaminant‐rich samples.     

Key factors that drive phytoplankton biomass and community composition in the urbanised Nahoon Estuary,South Africa

Estuaries are under intense pressure, because of urban developments and water abstraction. Water column characteristics of the Nahoon Estuary were examined in 2014–2015 to identify factors that influenced phytoplankton dynamics. The estuary was found to be saline (～33) and remained well-oxygenated (～6 mg l^?1) throughout the current study. During this period, freshwater inflow into the estuary was minimal and chlorophyll a biomass was low (3.6 ± 0.3 µg l^?1). Nutrient concentration at Nahoon Estuary showed a linear relationship with salinity, indicative of a conservative behaviour. Phytoplankton dynamics were altered by fluctuations in nutrient levels, not necessarily in response to freshwater inflow. The impact of Nahoon Dam and destructive land-use alongside the Nahoon River decreases freshwater inflow and increases nutrient loading into the estuary. In terms of nutrient loading, the current study showed the importance of microalgae as indicators of the nutrient status of an estuary. The presence of cyanobacteria and high phytoplankton biomass in the upper reaches of the estuary confirms the input of excessive nutrients. The results of the current study clearly show that better management of both the Nahoon River and its catchment is vital to ensure the health of the system.     

Morphological divergence of lake and stream Phoxinus of Northern Italy and the Danube basin based on geometric morphometric analysis

Minnows of the genus Phoxinus are promising candidates to investigate adaptive divergence, as they inhabit both still and running waters of a variety of altitudes and climatic zones in Europe. We used landmark‐based geometric morphometric methods to quantify the level of morphological variability in Phoxinus populations from streams and lakes of Northern Italy and the Danube basin. We analyzed body shape differences of populations in the dorsal, lateral, and ventral planes, using a large array of landmarks and semilandmarks. As the species identification of Phoxinus on morphological characters is ambiguous, we used two mitochondrial genes to determine the genetic background of the samples and to ensure we are comparing homogenous groups. We have found significant body shape differences between habitats: Minnow populations inhabiting streams had a deeper body and caudal peduncle and more laterally inserted pectoral fins than minnows inhabiting lakes. We have also found significant body shape differences between genetic groups: Italian minnows had deeper bodies, deeper and shorter caudal peduncles, and a shorter and wider gape than both groups from the Danube. Our results show that the morphology of Phoxinus is highly influenced by habitat and that body shape variation between habitats was within the same range as between genetic groups. These morphological differences are possibly linked to different modes of swimming and foraging in the respective habitats and are likely results of phenotypic plasticity. However, differences in shape and interlandmark distances between the groups suggest that some (though few) morphometric characters might be useful for separating Phoxinus species.     

Transmission routes maintaining a viral pathogen of steelhead trout within a complex multi‐host assemblage

This is the first comprehensive region wide, spatially explicit epidemiologic analysis of surveillance data of the aquatic viral pathogen infectious hematopoietic necrosis virus (IHNV) infecting native salmonid fish. The pathogen has been documented in the freshwater ecosystem of the Pacific Northwest of North America since the 1950s, and the current report describes the disease ecology of IHNV during 2000–2012. Prevalence of IHNV infection in monitored salmonid host cohorts ranged from 8% to 30%, with the highest levels observed in juvenile steelhead trout. The spatial distribution of all IHNV‐infected cohorts was concentrated in two sub‐regions of the study area, where historic burden of the viral disease has been high. During the study period, prevalence levels fluctuated with a temporal peak in 2002. Virologic and genetic surveillance data were analyzed for evidence of three separate but not mutually exclusive transmission routes hypothesized to be maintaining IHNV in the freshwater ecosystem. Transmission between year classes of juvenile fish at individual sites (route 1) was supported at varying levels of certainty in 10%–55% of candidate cases, transmission between neighboring juvenile cohorts (route 2) was supported in 31%–78% of candidate cases, and transmission from adult fish returning to the same site as an infected juvenile cohort was supported in 26%–74% of candidate cases. The results of this study indicate that multiple specific transmission routes are acting to maintain IHNV in juvenile fish, providing concrete evidence that can be used to improve resource management. Furthermore, these results demonstrate that more sophisticated analysis of available spatio‐temporal and genetic data is likely to yield greater insight in future studies.     

Conservation status of freshwater mussels in Europe: state of the art and future challenges

Freshwater mussels of the Order Unionida provide important ecosystem functions and services, yet many of their populations are in decline. We comprehensively review the status of the 16 currently recognized species in Europe, collating for the first time their life‐history traits, distribution, conservation status, habitat preferences, and main threats in order to suggest future management actions. In northern, central, and eastern Europe, a relatively homogeneous species composition is found in most basins. In southern Europe, despite the lower species richness, spatially restricted species make these basins a high conservation priority. Information on freshwater mussels in Europe is unevenly distributed with considerable differences in data quality and quantity among countries and species. To make conservation more effective in the future, we suggest greater international cooperation using standardized protocols and methods to monitor and manage European freshwater mussel diversity. Such an approach will not only help conserve this vulnerable group but also, through the protection of these important organisms, will offer wider benefits to freshwater ecosystems.     

Biometric and reproductive aspects of the pen shell Atrina seminuda (Bivalvia: Pinnidae) in northeastern Venezuela

The pen shell Atrina seminuda is a target for a small artisanal Caribbean fishery; however, little is known about its biology. The length frequency distribution, biometric relations and reproduction of this species were studied in northeastern Venezuela. Using transects selected from among 360 stations a population was sampled monthly by SCUBA diving. An analysis of 1748 individuals showed a shell height (SH) between 4?cm and 23.6?cm, with an average of 16.7?±?2.5?cm. For both sexes, statistical differences in mean SH were observed (analysis of variance F (1, 1113)?=?69.538; P?SL), total weight (TW) and adductor muscle weight (MW) as a function of SH. In all cases there were statistical differences between males and females, with males presenting positive allometry and females showing isometry. Mean SH at maturity for males (8.24?cm) was lower than for females (11.88?cm), and for sexes combined was estimated at 8.71?cm. Gametogenic activity was observed throughout the year, with two main peaks of spawning (April and August/September 2008). All this information is crucial for demographic modelling and stock assessment for managing this species.