Skeletal modification by microorganisms and their environments

Abstract

Microstructural post mortem changes to skeletal tissues by microorganisms are driven by several factors including the death history of an animal, its decomposition trajectory, and the depositing environment itself. The study we describe here brings together material from recent and fossil contexts that are depositionally distinct from a terrestrial-marine transitionary shoreline environment. We compare these changes with those of marine environments previously identified in the Mary Rose material, and those of continental waters (lakes) previously identified in the Cerro de la Garita (Concud) site, and we document this against bacterially related changes observed from terrestrial contexts. A new microstructural change identified in material from terrestrial sites is also described relating to rootlet damage. By considering microstructural change in skeletal tissues, it is maybe possible to ascribe environmental context, or, to better understand the complexity of material presented by transitionary environments.     

Revealing potential bridge vectors for BTV and SBV: a study on Culicoides blood feeding preferences in natural ecosystems in Spain

Several species of Culicoides (Diptera: Ceratopogonidae) are vectors of pathogens, such as the bluetongue (BTV) and Schmallenberg (SBV) viruses, which cause important diseases in domestic and wild ruminants. As wild ruminants can contribute to overwintering and epizootics of both diseases, knowledge of the host‐feeding behaviour of Culicoides in natural ecosystems is important to better understand their epidemiology. Blood‐engorged Culicoides females trapped in natural areas inhabited by different wild ruminant species were genetically analysed to identify host species. The origin of bloodmeals was identified in 114 females of 14 species of Culicoides. A total of 104 (91.1%) Culicoides fed on mammals and 10 (8.9%) on birds. The most abundant host identified was red deer (66.7%), followed by humans (13%) and fallow deer (6.1%). Eleven of the 14 species of Culicoides fed exclusively on mammalian hosts. Among them, five are mammalophilic species considered to be important BTV and/or SBV vectors. The results of the present study confirm that Culicoides imicola, Culicoides obsoletus, Culicoides scoticus, Culicoides pulicaris and Culicoides punctatus fed on wild ruminants, and therefore support the hypothesis that these species can act as bridge vectors by facilitating the circulation of pathogens between wild and domestic ruminant communities.     

Effects of dietary concentrate composition and linseed oil supplementation on the milk fatty acid profile of goats

Milk fat composition can be modulated by the inclusion of lipid supplements in ruminant diets. An interaction between the lipid supplement and the forage to concentrate ratio or the type of forage in the rations may affect milk fat composition. However, little is known about the effects of the starch-to-non-forage NDF ratio in the concentrate and lipid supplementation of goat diets. The aim of this work was to determine the role of dietary carbohydrates in goats rations supplemented with linseed oil on animal performance and milk fatty acid (FA) profile. A total of 16 dairy goats were allocated to two simultaneous experiments (two treatments each), in a crossover design with four animals per treatment and two experimental periods of 25 days. In both experiments alfalfa hay was the sole forage and the forage to concentrate ratio (33:67) remained constant. The concentrate in experiment 1 consisted of barley, maize and soybean meal (concentrate rich in starch), whereas it included soybean hulls replacing 25% of barley and 25% maize in experiment 2 (concentrate rich in NDF). As a result, the starch-to-non-forage NDF ratio was 3.1 in experiment 1 and it decreased to 0.8 in experiment 2. Both concentrates were administered either alone or in combination with 30 g/day of linseed oil. Animal performance parameters were not affected by experimental treatments. In contrast, major changes were observed in milk FA profile due to lipid supplementation and the type of concentrate. Linseed oil significantly raised vaccenic and rumenic acids as well as α-linolenic acid and its biohydrogenation intermediates while decreased medium-chain saturated FA (12:0 to 16:0) in milk fat. Milk fat contents of odd and branched-chain FA and trans-10 18:1 responded differently to linseed oil supplementation according to the concentrate fed.     

Extreme homogenization: The past,present and future of mammal assemblages on islands

Aim

We documented how the similarity of mammal assemblages on continental and oceanic islands has changed since initial human colonization, since European arrival and overall. We investigated how levels of similarity might change in the future.

Location

Continental and oceanic islands worldwide.

Time period

Human settlement of islands to the present, as well as projections for the future.

Major taxa studied

Mammals.

Methods

We used mammal occurrence data on islands to calculate the change in similarity using a pairwise approach based on Jaccard's index and a multisite approach based on Jaccard's and Sørensen's measures. We divided the mammal assemblages into two time periods, before and after island colonization or trade began with Europeans. We unpacked the mechanisms driving changes in similarity, exploring how initial similarity interacts with seven types of species turnover events to determine overall change. Finally, we calculated how future similarity levels will change if past trends in introductions and extinctions continue.

Results

Mammals, on both continental and oceanic islands, show one of the most pronounced cases of homogenization ever observed, and on oceanic islands mammals show the largest increase in homogenization ever observed for a terrestrial group. Most of the homogenization observed to date has been driven by recent historical changes, not by changes that occurred before European arrival. If current patterns of species introductions and extinctions continue, then oceanic islands will experience little additional homogenization, whereas continental islands will homogenize greatly beyond current levels.

Main conclusions

Mammal assemblages on oceanic islands show nearly an order of magnitude greater change in similarity than plant and bird assemblages. Projections of future similarity indicate that continental and oceanic islands are on different trajectories of change. These trajectories could be altered by management actions, but in some cases those actions that would be impactful run counter to current conservation norms.     

Evaluating the predicted extinction risk of living amphibian species with the fossil record

Bridging the gap between the fossil record and conservation biology has recently become of great interest. The enormous number of documented extinctions across different taxa can provide insights into the extinction risk of living species. However, few studies have explored this connection. We used generalised boosted modelling to analyse the impact of several traits that are assumed to influence extinction risk on the stratigraphic duration of amphibian species in the fossil record. We used this fossil‐calibrated model to predict the extinction risk for living species. We observed a high consensus between our predicted species durations and the current IUCN Red List status of living amphibian species. We also found that today's Data Deficient species are mainly predicted to experience short durations, hinting at their likely high threat status. Our study suggests that the fossil record can be a suitable tool for the evaluation of current taxa‐specific Red Listing status.     

Reverse Genetics for Peste des Petits Ruminants Virus: Current Status and Lessons to Learn from Other Non-segmented Negative-Sense RNA Viruses

Peste des petits ruminants (PPR) is a highly contagious transboundary animal disease with a severe socio-economic impact on the livestock industry, particularly in poor countries where it is endemic. Full understanding of PPR virus (PPRV) pathobiology and molecular biology is critical for effective control and eradication of the disease. To achieve these goals, establishment of stable reverse genetics systems for PPRV would play a key role. Unfortunately, this powerful technology remains less accessible and poorly documented for PPRV. In this review, we discussed the current status of PPRV reverse genetics as well as the recent innovations and advances in the reverse genetics of other non-segmented negative-sense RNA viruses that could be applicable to PPRV. These strategies may contribute to the improvement of existing techniques and/or the development of new reverse genetics systems for PPRV.     

Body mass estimation for †Cyonasua (Procyonidae,Carnivora) and related taxa based on postcranial skeleton

Procyonidae were the first northern placental carnivorans that reached the Neotropics. They are represented by two extinct genera: ?Cyonasua and ?Chapalmalania (late Miocene – early Pleistocene). Postcranial elements are only known for ?Cyonasua and related taxa (?Parahyaenodon argentinus and ?Tetraprothomo argentinus). To obtain highly reliable allometric equations for body mass estimations of fossil procyonids, we performed least squares regressions (multiple and bivariate lineal models) using 51 postcranial linear measurements. The extant sample included 124 taxa corresponding to nine families of Carnivora, with body mass data from the literature. We obtained about 63 equations from diverse combinations of postcranial measurements; 14 of them were selected using several reliability indexes as criteria. Our results show that body masses calculated for ?Cyonasua range between 12.63 and 28.45 kg, ?P. argentinus was estimated at 14.41 kg, while ?T. argentinus at 25.31 kg. Thus, the body mass of ?Cyonasua would have been at least twice as high as the mean of the extant procyonid Procyon cancrivorus. ?Cyonasua was probably able to fend off predators and quite capable of climbing slowly on thick-enough branches. Other palaeoecological and palaeobiological inferences are discussed.     

An evolutionary framework for the polar regions

Abstract: Our knowledge of the nature, generation and maintenance of largescale biodiversity patterns is still far from complete. This is particularly so in the Southern Hemisphere and in the marine realm, where recent taxonomic investigations of Mollusca and other invertebrate groups has cast doubt upon the existence of a simple cline in species richness between the tropics and the pole. Comparatively high regional diversity values for the shelled gastropods and other epifaunal taxa implies a considerable evolutionary legacy; this is supported, at least in part, by available evidence from the fossil record. Certain families within the living gastropod fauna maintain their prominence when traced back 40 m.y., and perhaps even longer; in addition, several Southern Ocean gastropod and bivalve genera can now be traced back to at least the late Eocene. Use of a variety of refugia may have enabled many taxa to survive repeated glacial advances. As we begin to revise our concept of the nature of latitudinal diversity gradients, so we also need to examine regional variations in evolutionary rates. Clearly this is a complex issue. but recourse to a pilot study based on the molluscan fossil record suggests that there may be no significant difference between the rates of radiation of tropical and cold-temperatdpolar taxa. The most diverse clades, which are all tropical, are simply the oldest. What data are available from the fossil record indicate that there is no appreciable latitudinal variation in rates of extinction either. Time, but not necessarily environmental stability, would appear to be crucial to the development of pockets of high taxonomic diversity. Recent improvement in our understanding of the biology of many polar marine invertebrates suggests that life in cold water is not an insuperable evolutionary problem. Of qual importance to any intrinsic properties of organisms which may have governed the differentiation of large-scale biodiversity patterns is the role of extrinsic processes. Foremost among these has almost certainly been repeated range shifts in response to Cenozoic climatic cycles.     

古生物信息查询系统

介绍了古生物微机信息查询系统的结构设置（包括数据库设置和功能模块设置），和程序设计（包括数据库结构设计、结构化程序设计、子程序设计、菜单技术程序设计和宏替换函数＆程序设计）。