Functional morphology and light-gathering ability of podocopid ostracod eyes and the palaeontological implications

The optical features of lateral ocelli of the eye were examined in 29 Recent species of the major ostracod group Podocopida using a theoretical morphological model. A cuticular lens–tapetum model was used for this purpose. Ray tracing was simulated on each model in order to assess the light-gathering abilities of the various forms of eyes. The results of computer simulations and morphospace analyses indicated that the light-gathering ability of the eye is dominantly affected by the thickness and curvature of the outer surface of the lens. On the basis of a combination of form and light-gathering ability, four eye types (LG1, LG2, MG, and HG) were recognized. The results of the phototactic experiment and the light intensity from each microhabitat were concordant with estimated scores on the light-gathering abilities using the theoretical models. Phylogenetic analyses and the fossil record indicate that the MG type is the most plesiomorphic, and that the other types derive from this. The present study also suggests that the optical structure that determines the light-gathering ability is closely related to the development of surface ornamentation on the valve.  © 2006 The Linnean Society of London, Zoological Journal of the Linnean Society , 2006, 147 , 97–108.     

A REVISION OF SCOMBRID FISHES (SCOMBROIDEI, PERCIFORMES) FROM THE MIDDLE EOCENE OF MONTE BOLCA, ITALY

Abstract:  A taxonomic revision of mackerel-like fishes (Scombridae, Scombroidei, Perciformes) from the Monte Bolca localities in Italy is presented as part of continuing research into phylogenetic relationships of fossil and Recent scombroids. Three new genera are proposed: † Godsilia , † Pseudauxides and † Thunnoscomberoides . In addition, species generally known as † Thynnus bolcensis , † Thynnus lanceolatus , † Scombrosarda propterygia , † Scomberomorus speciosus and † Scomberomorus tenuis are renamed † Thunnoscomberoides bolcensis comb. nov., † Godsilia lanceolata comb. nov., † Auxides propterygius comb. nov. and † Pseudauxides speciosus comb. nov., respectively. † S. tenuis , a nomen nudum , is a junior synonym of † P. speciosus . Provisional phylogenetic hypotheses of these Monte Bolca scombrids are as follows. † Auxides and † Pseudauxides are most likely primitive sister taxa of the mackerels Scomber and Rastrelliger with † Pseudauxides as the most primitive. † Godsilia may be placed between Scombrinae and Scomberomorinae. † Thunnoscomberoides seems to fit between Scombrinae and Thunnini.     

Plant carbon balance, evolutionary innovation and extinction in land plants

The plant fossil record was reviewed to highlight how consideration of plant carbon balance strengthens our understanding of various evolutionary innovation and extinction events. Following a brief physiological primer to carbon acquisition and allocation in C3‐plants, specific evolutionary events are discussed in connection with postulated carbon‐based mechanisms. Primary topics include: (i) the evolution of plants with the C4‐photosynthetic pathway; (ii) the surprising lack of plant extinctions during the Pleistocene (1.6 million years ago, Ma); (iii) the trend toward declining plant diversity and increasing rates of herbivory across the Palaeocene/Eocene transition (57–52 Ma); and (iv) megaherbivore extinctions at the end of the Pleistocene (10 thousand years ago, Ka). A framework is presented for testing hypotheses on the cause–effect relationships between global carbon cycling, plant carbon dynamics and the evolution of terrestrial ecosystems.     

Molecular clocks do not support the Cambrian explosion

The fossil record has long supported the view that most animal phyla originated during a brief period approximately 520 MYA known as the Cambrian explosion. However, molecular data analyses over the past 3 decades have found deeper divergences among animals (approximately 800 to 1,200 MYA), with and without the assumption of a global molecular clock. Recently, two studies have instead reported time estimates apparently consistent with the fossil record. Here, we demonstrate that methodological problems in these studies cast doubt on the accuracy and interpretations of the results obtained. In the study by Peterson et al., young time estimates were obtained because fossil calibrations were used as maximum limits rather than as minimum limits, and not because invertebrate calibrations were used. In the study by Aris-Brosou and Yang, young time estimates were obtained because of problems with rate models and other methods specific to the study, and not because Bayesian methods were used. This also led to many anomalous findings in their study, including a primate-rodent divergence at 320 MYA. With these results aside, molecular clocks continue to support a long period of animal evolution before the Cambrian explosion of fossils.     

Pregnancy associated glycoprotein-1, -6, -7, and -17 are major products of bovine binucleate trophoblast giant cells at midpregnancy

Pregnancy associated glycoproteins (PAGs) are extensively glycosylated secretory proteins of ruminant trophoblast cells. In cattle placenta several PAG cDNAs are expressed, but the variety of correspondent proteins and their degree of glycosylation are not well characterized. Thus, we purified PAGs by using a protocol which included a lectin (Vicia villosa agglutinin) affinity chromatography. Due to their specific glycosylation pattern, PAGs derived from binucleate trophoblast giant cells were highly enriched by this protocol. PAGs were purified from cotyledons of 2 day 100 placentas and from a single placenta at day 155 and 180. In all samples three major bands (75; 66; 56 kDa) were detected by one-dimensional SDS-PAGE. Mass-spectrometric analysis identified the 75 kDa band as a mixture of PAG-7 and PAG-6, the 66 kDa band as PAG-1 and the 56 kDa band as PAG-17. N-terminal sequencing of the day 100 sample confirmed the mass spectrometric identifications. Enzymatic release of N-glycans with peptide-N-glycanase-F from PAGs reduced the molecular weight to approximately 37 kDa which corresponds to the theoretical molecular mass of PAGs. Limited peptide-N-glycanase-F treatment revealed that all four N-glycosylation sites are quantitatively occupied in PAG-1. Compared to PAG-1 the number of potential N-glycosylation sites is lower in PAG-17 (three sites) and higher in PAG-6 and -7 (five and six sites, respectively). This suggests that the number of attached N-glycans is the main determinant of molecular mass of bovine PAGs. The degree of glycosylation may be a major factor regulating the plasma half life of PAGs.     

First record of Cercidiphylloxylon(Cercidiphyllaceae)from the Palaeocene of Fushun,NE China

Cercidiphylloxylon spenceri(Brett)Pearson is described from the Lizigou Formation,Palaeocene in China.The growth rings are distinct; pores are diffuse,solitary,with somewhat angular outlines in cross section;vessel elements long with long scalariform perforation plates; intervessel pitting is opposite to scalariform; fibertracheids are present; axial parenchyma is scarce; rays are mostly biseriate and heterogeneous.All wood characters of the fossil specimen fall into the range of those of extant Cercidiphyllum(Cercidiphyllaceae).The finding is one of the earliest fossil wood records of Cercidiphyllaceae.     

Schmeissneria: An angiosperm from the Early Jurassic

The origin of angiosperms has been a focus of intensive research for a long time. The so-called preCretaceous angiosperms, including Schmeissneria, are usually clouded with doubt. To expel the cloud around the enigmatic Schmeissneria, the syntype and new materials of Schmeissneria collected previously in Germany and recently in China are studied. These materials include female inflorescences and infructescences. The latter are old materials but were under-studied previously. Light microscopy and scanning electron microscope observations indicate that the fruits in these infructescences have in situ seeds enclosed, and that the ovaries are closed before pollination. Thus the plants meet two strict criteria for angiosperms: angiospermy plus angio-ovuly. Placing Schmeissneria in angiosperms will extend the record of angiosperms up to the Early Jurassic, more compatible with many molecular dating conclusions on the age of angiosperms, and demanding a reassessment of the current doctrines on the origin of angiosperms. Although the phylogenetic relationship of Schmeissneria to other angiosperms apparently is still an open question, this study adds to research concerning the origin of angiosperms.     

Skeletal elements within teleost eyes and a discussion of their homology

Scleral ossicles and scleral cartilages form part of the craniofacial skeleton of many vertebrates. Some vertebrates, including all birds and most reptiles, but excluding most mammals, have scleral cartilages as well as scleral ossicles supporting their eyes. The teleost equivalent of these elements has received little attention in the literature. From radiographic and whole-mount analyses of over 400 individuals from 376 teleost species, we conclude that the teleost scleral skeletal elements (ossicles and cartilage) differ significantly from those of reptiles (including birds). Scleral ossicles in teleosts have different developmental origins, different positions within the eyeball, and different relationships with the scleral cartilaginous element than those in reptiles. From whole-mount staining of a growth series of four species of teleost (Danio rerio, Salmo salar, Esox lucius, and Alosa pseudoharengus), we interpret the development of these elements and show that they arise from within an Alcian blue-staining cartilaginous ring that develops around the eye earlier in development. We present possible scenarios on the evolution of these scleral skeletal elements from a common gnathostome ancestor, and consider that teleost scleral skeletal elements may not be homologous to those in reptiles. Our study indicates that homology cannot be assumed for these elements, despite the fact that they share the same name, scleral ossicles.     

A new scenario for the quaternary history of European beech populations: palaeobotanical evidence and genetic consequences

Here, palaeobotanical and genetic data for common beech (Fagus sylvatica) in Europe are used to evaluate the genetic consequences of long-term survival in refuge areas and postglacial spread. Four large datasets are presented, including over 400 fossil-pollen sites, 80 plant-macrofossil sites, and 450 and 600 modern beech populations for chloroplast and nuclear markers, respectively. The largely complementary palaeobotanical and genetic data indicate that: (i) beech survived the last glacial period in multiple refuge areas; (ii) the central European refugia were separated from the Mediterranean refugia; (iii) the Mediterranean refuges did not contribute to the colonization of central and northern Europe; (iv) some populations expanded considerably during the postglacial period, while others experienced only a limited expansion; (v) the mountain chains were not geographical barriers for beech but rather facilitated its diffusion; and (vi) the modern genetic diversity was shaped over multiple glacial-interglacial cycles. This scenario differs from many recent treatments of tree phylogeography in Europe that largely focus on the last ice age and the postglacial period to interpret genetic structure and argue that the southern peninsulas (Iberian, Italian and Balkan) were the main source areas for trees in central and northern Europe.     

Phylogeny and ultrastructure of Miliammina fusca: evidence for secondary loss of calcification in a Miliolid Foraminifer

The classification of the Foraminifera, a widely distributed group of largely marine protists, has traditionally been based on morphological characters. The most important of these are the composition and structure of the shell or "test." Here, we use both phylogenetic analysis of the genes for small subunit rRNA and beta-tubulin and ultrastructural analysis to document a reversion in wall type from more derived calcareous tests to an agglutinated test. These data indicate that the genus Miliammina, and possibly other members of the Rzehakinidae, should be placed in the Order Miliolida as opposed to their current assignment in Order Textulariida. We also address the effects this reversion may have had on the ability of rzehakinacids to effectively colonize marginal marine environments. Finally, the hypothesis that some multilocular agglutinated foraminiferans descended from calcareous lineages has implications for interpretation of the foraminiferal fossil record.