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991.
Palmer CA Watts RA Houck LD Picard AL Arnold SJ 《Evolution; international journal of organic evolution》2007,61(1):202-215
In this article we explore the evolutionary history of a functional complex at the molecular level in plethodontid salamanders. The complex consists of a proteinaceous courtship pheromone, a pheromone-producing gland on the male's chin, and a set of behaviors for delivering the pheromone to the female. Long-term evolutionary stasis is the defining feature of this complex at both the morphological and behavioral levels. However, our previous assessment of the pheromone gene, plethodontid receptivity factor (PRF), revealed rapid evolution at the molecular level despite stasis at higher levels of organization. Analysis of a second pheromone gene, sodefrin precursor-like factor (SPF), now indicates that evolutionary decoupling in this complex is pervasive. The evolutionary profiles of SPF and PRF are remarkably similar in that: (a) both genes exhibit high levels of sequence diversity both within and across taxa, (b) genetic diversity has been driven by strong positive selection, and (c) the genes have evolved heterogeneously in different salamander lineages. The composition of the pheromone signal as a whole, however, has experienced an extraordinary evolutionary transition. Whereas SPF has been retained throughout the 100 MY radiation of salamanders, PRF has only recently been recruited to a pheromone function (27 million years ago). When SPF and PRF coexist in the same clade, they show contrasting patterns of evolution. When one shows rapid evolution driven by positive selection, the other shows neutral divergence restrained by purifying selection. In one clade, the origin and subsequent rapid evolution of PRF appear to have interfered with the evolution and persistence of SPF, leading to a pattern of evolutionary replacement. Overall, these two pheromone genes provide a revealing window on the dynamics that drive the evolution of multiple traits in a signaling complex. 相似文献
992.
Langerhans RB Gifford ME Joseph EO 《Evolution; international journal of organic evolution》2007,61(9):2056-2074
Although theory indicates that natural selection can facilitate speciation as a by-product, demonstrating ongoing speciation via this by-product mechanism in nature has proven difficult. We examined morphological, molecular, and behavioral data to investigate ecology's role in incipient speciation for a post-Pleistocene radiation of Bahamas mosquitofish (Gambusia hubbsi) inhabiting blue holes. We show that adaptation to divergent predator regimes is driving ecological speciation as a by-product. Divergence in body shape, coupled with assortative mating for body shape, produces reproductive isolation that is twice as strong between populations inhabiting different predator regimes than between populations that evolved in similar ecological environments. Gathering analogous data on reproductive isolation at the interspecific level in the genus, we find that this mechanism of speciation may have been historically prevalent in Gambusia. These results suggest that speciation in nature can result as a by-product of divergence in ecologically important traits, producing interspecific patterns that persist long after speciation events have completed. 相似文献
993.
Comparison of the complete human genome sequence to one of its closest relatives, the chimpanzee genome, provides a unique opportunity for exploring recent evolutionary events affecting the microsatellites in these species. A simple assumption on microsatellite distribution is that the total length of perfect repeats is constant compared to that of imperfect ones regardless of the repeat sequence. In this paper, we show that this is valid for most of the chimpanzee genome but not for a number of human chromosomes. Our results suggest accelerated evolution of microsatellites in the human genome relative to the chimpanzee lineage. 相似文献
994.
Evolutionary patterns in the antR-Cor gene in the dwarf dogwood complex (Cornus, Cornaceae) 总被引:1,自引:0,他引:1
The evolutionary pattern of the myc-like anthocyanin regulatory gene antR-Cor was examined in the dwarf dogwood species complex (Cornus Subgenus Arctocrania) that contains two diploid species (C. canadensis and C. suecica), their putative hybrids with intermediate phenotypes, and a tetraploid derivative (C. unalaschkensis). Full-length sequences of this gene (∼4 kb) were sequenced and characterized for 47 dwarf dogwood samples representing all
taxa categories from 43 sites in the Pacific Northwest. Analysis of nucleotide diversity indicated departures from neutral
evolution, due most likely to local population structure. Neighbor-joining and haplotype network analyses show that sequences
from the tetraploid and diploid intermediates are much more strongly diverged from C. suecica than from C. canadensis, and that the intermediate phenotypes may represent an ancestral group to C. canadensis rather than interspecific hybrids. Seven amino acid mutations that are potentially linked to myc-like anthocyanin regulatory
gene function correlate with petal colors differences that characterize the divergence between two diploid species and the
tetraploid species in this complex. The evidence provides a working hypothesis for testing the role of the gene in speciation
and its link to the petal coloration. Sequencing and analysis of additional nuclear genes will be necessary to resolve questions
about the evolution of the dwarf dogwood complex. 相似文献
995.
Haag ES 《Genetica》2007,129(1):45-55
The evolution of molecules, developmental circuits, and new species are all characterized by the accumulation of incompatibilities
between ancestors and descendants. When specific interactions between components are necessary at any of these levels, this
requires compensatory coevolution. Theoretical treatments of compensatory evolution that only consider the endpoints predict
that it should be rare because intermediate states are deleterious. However, empirical data suggest that compensatory evolution
is common at all levels of molecular interaction. A general solution to this paradox is provided by plausible neutral or nearly
neutral intermediates that possess informational redundancy. These intermediates provide an evolutionary path between coadapted
allelic combinations. Although they allow incompatible end points to evolve, at no point was a deleterious mutation ever in
need of compensation. As a result, what appears to be compensatory evolution may often actually be “pseudocompensatory.” Both
theoretical and empirical studies indicate that pseudocompensation can speed the evolution of intergenic incompatibility,
especially when driven by adaptation. However, under strong stabilizing selection the rate of pseudocompensatory evolution
is still significant. Important examples of this process at work discussed here include the evolution of rRNA secondary structures,
intra- and inter-protein interactions, and developmental genetic pathways. Future empirical work in this area should focus
on comparing the details of intra- and intergenic interactions in closely related organisms. 相似文献
996.
It is well proved that the probability that a protein interacts with itself is higher than that it interacts with another protein. It has been recently shown that the probability of interaction is also higher for proteins with significant sequence similarity. In this paper we show that proteins sharing identical PFAM domains interact more often than expected by chance in Saccharomyces cerevisiae and Escherichia coli. We also analyze the variety of domain interfaces used by homologous proteins to interact and show that the overrepresentation of interactions between homological proteins is not caused by small number of pairs of identical "sticky domains" shared between interacting proteins. 相似文献
997.
Are transversion mutations better? A Mutagenesis Assistant Program analysis on P450 BM-3 heme domain
Directed evolution represents a versatile tool to tailor enzyme properties to needs in industrial applications and to understand structure-function relationships. Genetic diversity is commonly generated using error-prone PCR. Exploration of sequence space by random mutagenesis strongly favors transitions when enzyme-based mutagenesis methods are employed (Wong, T. S., Zhurina, D., Schwaneberg, U., Comb. Chem. High Throughput Screen. 2006, 9, 271-288). The genetic code has been organized in a manner that limits chemical diversity when a single transition mutation occurs in a codon (Wong, T. S., Roccatano, D., Schwaneberg, U., Biocatal. Biotransformation 2006, in press). Are transitions more beneficial than transversions for adapting biocatalysts to non-natural process conditions? In a statistical analysis performed with the Mutagenesis Assistant Program (MAP), we compared the consequences of transition and transversion bias on amino acid substitution patterns of the P450 BM-3 heme domain. For the analysis, we used a recently introduced benchmarking system consisting of a protein structure indicator, an amino acid diversity indicator with a codon diversity coefficient, and a chemical diversity indicator. A detailed analysis for the P450 BM-3 heme domain showed that an ideal transversion bias generates more diverse amino acid substitution patterns with a significantly different chemical composition than an ideal transition bias. Emphasis is given on the theoretical analysis with a brief discussion on potential implication of transition and transversion bias in directed evolution experiments. 相似文献
998.
Foraging behavior and recruitment of red imported fire ant Solenopsis invicta Buren in typical habitats of South China 下载免费PDF全文
The foraging behavior consisted of three steps: searching, recruitment and transportation. Searching time was different for different foods; searching time for honey was longer than that for any other food tested. It was also affected by habitats with the searching time of fire ants in a litchi orchard being significantly longer than that for other habitats (p<0.01). However, the weight of the food had no obvious effect on the searching time. The recruitment of fire ant workers during foraging was regular, and there was a strong relationship between the number of recruited workers and the transportation time. When the food was too heavy to transport immediately into the nest, the number of recruited workers was maximum at 30 min after the food was initially found. For smaller sized food sources maximum recruitment of workers was possible at a shorter time and the food was more rapidly transported back to the nest. For different foods, the dynamics of recruitment were similar although the number of recruits was different. The weight of the food and the habitats also deeply affected the time spent on transportation. 相似文献
999.
Zhu Z Wang M Gautam A Nazor J Momeu C Prodanovic R Schwaneberg U 《Biotechnology journal》2007,2(2):241-248
A directed evolution protocol was developed for glucose oxidase (GOx) from Aspergillus niger that mimics applications conditions and employs a well-known mediator, oxidized ferrocenemethanol, in a medium throughput screen (96-well plate format). Upon reduction, oxidized ferrocenemethanol shows a color change from blue to pale yellow that can be recorded at 625 nm. Under optimized screening conditions, a CV of less than 20% was achieved in 96-well microtiter plates. For validating the screening system, two mutant libraries of GOx were generated by standard error-prone PCR conditions (0.04 mM MnCl(2)) and Saccharomyces cerevisiae was employed as host for secreted GOx expression. Two screening of approximately 2000 GOx mutants yielded a double mutant (T30S I94V) with improved pH and thermal resistance. Thermal resistance at a residual activity of 50% was increased from 58 degrees C (wild type, WT) to 62 degrees C (T30S I94V) and pH stability was improved at basic pH (pH 8-11). K(m) for glucose remained nearly unchanged (20.8 mM WT; 21.3 mM T30S I94V) and k(cat) increased (69.5/s WT; 137.7/s T30S I94V). 相似文献
1000.
Primary Cell Wall Structure in the Evolution of Land Plants 总被引:4,自引:0,他引:4
Alex L. Nothnagelt Eugene A. Nothnagel 《植物学报(英文版)》2007,49(8):1271-1278
Investigation of the primary cell walls of lower plants improves our understanding of the cell biology of these organisms but also has the potential to improve our understanding of cell wall structure and function in angiosperms that evolved from lower plants. Cell walls were prepared from eight species, ranging from a moss to advanced gymnosperms, and subjected to sequential chemical extraction to separate the main polysaccharide fractions. The glycosyl compositions of these fractions were then determined by gas chromatography. The results were compared among the eight plants and among data from related studies reported in the existing published reports to identify structural features that have been either highly conserved or clearly modified during evolution. Among the highly conserved features are the presence of a cellulose framework, the presence of certain hemicelluloses such as xyloglucan, and the presence of rhamnogalacturonan II, a domain in pectic polysaccharides. Among the modified features are the abundance of mannosyl-containing hemicelluloses and the presence of methylated sugars. 相似文献