Rapid and efficient extraction of soluble proteins from Gram-negative microorganisms without disruption of cell walls

The ability of buffer solutions containing low concentrations of nonionic detergents (Triton X-100, Tween 20, Brij 58, and Lubrol PX) and the anionic detergent sodium deoxycholate, as well as mixtures of these detergents with chaeotropes (urea and guanidine hydrochloride), to extract intracellular proteins of Gram-negative microorganisms (Escherichia coli and Pseudomonas aeruginosa) was studied. It was established that the solutions containing Triton X-100 and sodium deoxycholate and the mixtures of these detergents with urea are the most effective. It was shown that the extraction of proteins from bacterial cells under the studied conditions is not accompanied by a release of DNA into solution but is associated with extraction of low-molecular RNAs. The level of protein extraction reaches 80%. No disruption of the bacterial cell wall occurs during the extraction, and proteins probably penetrate through meshes of the murein network. The efficiencies of our buffer mixtures are close to or higher than that of the commercial reagent CelLytic B (Sigma, United States). The practical uses of the chaeotropic mixtures developed are discussed.     

Use of membrane filters for selective isolation of actinomycetes from soil

Abstract A method using membrane filters of appropriate pore size, to selectively isolate actinomycetes from a mixed population of soil microorganisms, is described.
The method is based on the ability of actinomycetes to propagate and pass through the pores of filters while bacteria and fungi are retained on the membrane surface.     

Biodegradation of nitroaromatics and other nitrogen-containing xenobiotics

Nitroaromatic compounds constitute a major class of widely distributed environmental contaminants. Compounds like nitrobenzene, nitrotoluenes, nitrophenols, nitrobenzoates and nitrate esters are of considerable industrial importance. They are frequently used as pesticides, explosives, dyes, and in the manufacture of polymers and pharmaceuticals. Many nitroaromatic compounds and their conversion products have been shown to have toxic or mutagenic properties. Most of them are biodegradable in nature by various microorganisms. However, most contaminated environments have combinations of nitroaromatic compounds present, which complicates the bioremediation efforts. During the last 10 years, research on the biodegradation of nitroaromatic compounds has yielded a wealth of information on the microbiological, biochemical and genetic aspects of the process. New metabolic pathways have been discovered and genes and enzymes responsible for key transformation reactions have been identified and characterized. Knowledge and advances in pathway engineering have helped further understanding of the nature of nitroaromatic biodegradation and the development of bioremediation solutions. In this paper, an overview of recent developments on the biodegradation of nitrogen-containing xenobiotics is presented.     

大气CO2浓度升高对土壤碳库稳定性的影响

工业革命以来,大气CO₂浓度持续上升,升高的CO₂浓度会改变植物光合产物积累、土壤碳库的碳输入和碳输出过程,进而通过影响有机碳组成和周转特征来调控土壤碳库动态变化。土壤碳库是陆地生态系统碳库的重要组成部分,其碳储量的微小变化都会对大气CO₂浓度和气候变化产生巨大影响。但目前关于CO₂浓度升高对土壤碳库动态和稳定性的影响还不清楚,很大程度上限制了预测陆地生态系统碳循环对气候变化的反馈。系统综述国内外大气CO₂浓度升高对植被生产力、植被碳输入和土壤碳库影响的研究进展,旨在揭示土壤碳库物理、化学组成以及周转特征对CO₂浓度升高的响应过程和机理,探讨CO₂升高情境下土壤微生物特征对土壤碳库稳定性的影响和驱动机制,为深入理解全球变化下的土壤碳循环特征提供理论支撑。     

The Guts of Herbivorous Invertebrates: Promising Sources of Diverse Microorganisms with Unique Hemicellulolytic Systems

Invertebrates including insects are heterotrophic organisms and widely distributed in ecosystems. Due to their superior ability to digest various types of plant biomass taken as foods, some herbivorous invertebrates have attracted a great deal of industrial attention because such organisms include diverse cellulolytic and hemicellulolytic symbionts in their gut. Recent studies have shown that some of gut microorganisms of herbivores possess one or more extracellular fibrolytic enzymes with unique functions, which can be exploited as useful biocatalysts in various bioindustrial fields. Specifically, microbial hemicellulases with favorable biocatalytic activities are expected to be used for the development of excellent animal feed additives, production of prebiotics such as xylo‐ and mannooligosaccharides, and pretreatment of lignocellulosic biomass for the preparation of fermentable sugars. Here, we review our recent studies accomplished on several hemicellulolytic bacteria isolated from the guts of invertebrates and their glycoside hydrolases such as endo‐β‐1,4‐xylanases and endo‐β‐1,4‐mannanases.     

防烟叶霉变菌株对烟叶霉变的影响

为有效防止烟叶霉变,采用平板对峙培养的方法,就3个防烟叶霉变菌株对霉变菌的抑制作用进行了研究．结果表明,JMBl42、B112、B329对供试霉变菌皆表现出一定的抑制作用,对不同霉变菌的平均抑制率分别为51．6％、52．9％、53．7％．3个防烟叶霉变菌株分别以每mL 10^7、10^8、10^9 cfu(colony当当forming unit)13个浓度单独处理和每mL10。cfu浓度混合处理烟叶,结果表明,JMBl42菌株每mL10,cfu处理浓度效果最好,与对照差异极显著,其次为B112菌株每mL10^8cfu处理浓度,但它与对照差异不显著,B329菌株处理效果最差,混合施用结果与对照差异不显著．由此确定JMBl42菌株每mL10^9cfu处理浓度为仓储烟叶防霉变最佳处理参数、     

外来物种刺槐对土壤微生物功能多样性的影响

以延河流域不同植被区内人工刺槐(Robinia pseudoacacia)群落和乡土植物群落的土壤微生物为研究对象,利用Biolog微平板技术对土壤微生物功能多样性进行测定,分析人工引种刺槐在不同环境梯度(3个植被区)下对土壤微生物功能多样性的影响。结果表明:刺槐对不同环境梯度下的土壤微生物的影响明显不同。从草原区到森林区,刺槐林之间土壤微生物群落的平均颜色变化率(AWCD)和土壤微生物功能多样性指数均没有显著变化;但与乡土植物群落比较,草原区、森林草原区和森林区土壤AWCD分别表现为刺槐乡土植物、刺槐乡土植物、刺槐乡土植物;在草原区和森林草原区刺槐林土壤微生物群落的群落丰富度指数(S)、Shannon-Wiener指数(H)、Simpson指数(D)、Mc Intosh指数(U)均大于乡土植物,森林区刺槐林群落丰富度指数(S)、Shannon指数(H)、Simpson指数(D)均小于乡土植物;刺槐林和乡土植物群落下土壤微生物碳源利用存在差异,主要体现在对糖类、氨基酸类的利用上。PCA分析显示主成分1贡献较大的碳源有24种,在主成分分离中起主要贡献作用的是糖类、氨基酸类和羧酸类。土壤碳氮含量能影响土壤微生物功能多样性指数,土壤含水量和温湿度能够影响碳源的利用类型。刺槐对土壤微生物功能多样性的影响存在区域差异,在评价刺槐对土壤生态过程与功能的影响时必须要考虑这种空间差异性。     

基于城市土地利用类型的地表温度与植被指数的关系

以沈阳市三环作为研究区域,基于QuickBird、Landsat/TM遥感影像和GIS空间分析技术,获取城市土地利用信息,陆地表面温度(LST)以及归一化植被指数(NDVI),定量分析了LST与NDVI在不同城市土地利用类型之间的差异及空间关系.结果表明:LST和NDVI具有明显相反的变化趋势,城市不同土地利用类型的LST与NDVI平均值也具有显著的差异性;多重比较发现,LST和NDVI在两两土地利用类型之间的差异不同;LST与NDVI相关性的显著程度受空间尺度的影响,LST与NDVI的相关性随空间尺度变化呈现出先增加后降低再逐渐增加的趋势.研究结果可为城市规划以及城市绿地系统规划中缓解城市热岛效应提供科学依据.     

刈割对草原化荒漠区驼绒藜(Krascheninnikovia ceratoides)根际土壤特性的影响

在休眠期对草原化荒漠中自然生长的驼绒藜(Krascheninnikovia ceratoides)进行不同频度的刈割处理(连年刈割、隔年刈割、对照),通过测定根际土壤理化性质、土壤微生物数量及土壤酶活性等指标,分析和讨论了不同频度的刈割处理对驼绒藜根际土壤特性的影响。结果表明:(1)连年刈割和隔年刈割都显著提高了根际土壤含水量,隔年刈割使根际土壤全碳含量显著上升、有机质含量显著下降,但刈割对根际土壤pH值和全氮含量的影响不明显;(2)刈割对根际土壤微生物总量的影响不明显,但显著影响细菌、真菌和放线菌的组成,连年刈割使真菌数量显著增加,隔年刈割使放线菌数量显著增加,驼绒藜根际土壤中放线菌所占比例最大,其数量表征了土壤的贫瘠程度;(3)刈割对根际土壤过氧化氢酶和中性磷酸酶活性有显著影响,两种刈割处理会显著提高土壤过氧化氢酶活性、降低土壤中性磷酸酶活性,而对土壤多酚氧化酶、脲酶、转化酶和碱性磷酸酶活性的影响不显著。总之,隔年刈割对植物根际土壤养分供给及土壤分解者的活性更加有利,而且土壤理化因子对土壤微生物数量和土壤酶活性的影响不显著。刈割对驼绒藜根际土壤特性影响的规律性不强,可能是由于半灌木刈割利用的时间较短,根际土壤各个测量指标之间尚未形成显著的相关性。