Interspecific hybridization causes long‐term phylogenetic discordance between nuclear and mitochondrial genomes in freshwater fishes

Classification, phylogeography and the testing of evolutionary hypotheses rely on correct estimation of species phylogeny. Early molecular phylogenies often relied on mtDNA alone, which acts as a single linkage group with one history. Over the last decade, the use of multiple nuclear sequences has often revealed conflict among gene trees. This observation can be attributed to hybridization, lineage sorting, paralogy or selection. Here, we use 54 groups of fishes from 48 studies to estimate the degree of concordance between mitochondrial and nuclear gene trees in two ecological grades of fishes: marine and freshwater. We test the hypothesis that freshwater fish phylogenies should, on average, show more discordance because of their higher propensity for hybridization in the past. In keeping with this idea, concordance between mitochondrial and nuclear gene trees (as measured by proportion of components shared) is on average 50% higher in marine fishes. We discuss why this difference almost certainly results from introgression caused by greater historical hybridization among lineages in freshwater groups, and further emphasize the need to use multiple nuclear genes, and identify conflict among them, in estimation of species phylogeny.     

Evolutionary ecology of opsin gene sequence,expression and repertoire

Linking molecular evolution to biological function is a long‐standing challenge in evolutionary biology. Some of the best examples of this involve opsins, the genes that encode the molecular basis of light reception. In this issue of Molecular Ecology, three studies examine opsin gene sequence, expression and repertoire to determine how natural selection has shaped the visual system. First, Escobar‐Camacho et al. ( 2017 ) use opsin repertoire and expression in three Amazonian cichlid species to show that a shift in sensitivity towards longer wavelengths is coincident with the long‐wavelength‐dominated Amazon basin. Second, Stieb et al. ( 2017 ) explore opsin sequence and expression in reef‐dwelling damselfish and find that UV‐ and long‐wavelength vision are both important, but likely for different ecological functions. Lastly, Suvorov et al. ( 2017 ) study an expansive opsin repertoire in the insect order Odonata and find evidence that copy number expansion is consistent with the permanent heterozygote model of gene duplication. Together these studies emphasize the utility of opsin genes for studying both the local adaptation of sensory systems and, more generally, gene family evolution.     

金乌贼繁殖行为与交配策略

2014年6月于室内大型水槽使用摄像系统对金乌贼繁殖过程进行连续观察与记录,通过定性和定量比较分析,解析其繁殖过程中游泳、捕食、求偶、争斗、交配及产卵等行为特征。结果显示:金乌贼游泳主要依靠漏斗喷水的反作用力,持续游泳能力较弱;繁殖期的金乌贼继续摄食,能发现周围20—38 cm范围内的凡纳滨对虾,攻击距离为7—24 cm,能在2.1—6.1 s内完成对对虾的捕获且成功率极高,外源营养为卵(精)巢不同步发育、分批产卵和复杂的繁殖行为继续提供能量支持;金乌贼具明显的求偶行为,规格差异是影响求偶的重要因素,其中雄性亲本更倾向选择与自身规格相当或略小的雌性,而雌性亲本则更倾向于选择大规格(较大规格争斗易获胜)的雄性;金乌贼一次交配持续125—398 s,雄性有明显的精子移除行为和领域性,交配后雄性伴游在雌性周围3—24 cm范围内,不允许其他乌贼靠近,平均伴游61 min后会再次交配。精子移除、伴游以及多次交配是雄性金乌贼有效提高父权贡献率的关键行为基础;研究结果表明,金乌贼采取"多夫多妻"的混交婚配策略,两性亲本均存在多次交配现象,这能有效提高雌雄的生殖成功率和受精卵的遗传多样性。     

青岛崂山青山湾人工鱼礁区及附近海域鱼卵仔稚鱼种类组成与数量分布

为研究人工鱼礁对产卵鱼类的诱集效果和庇护效应,2014—2015年对青岛崂山青山湾海域人工鱼礁区及附近海域鱼卵和仔稚鱼的种类组成和数量分布进行了水平和垂直拖网调查. 2014年春、夏、秋3个季节的7个航次调查中,共采集鱼卵7306粒、仔稚鱼52尾,隶属于4目9科11属12种;2015年同期进行的13个航次调查中,共采集鱼卵10373粒、仔稚鱼159尾,隶属于6目11科14属15种.2年间鱼卵和仔稚鱼样品均以鲈形目数量最多,鲽形目次之,其中鱼卵样品中仅有少鳞鱚和短吻红舌鳎构成优势种;仔稚鱼样品以少鳞鱚优势度最高,但不存在仔稚鱼优势种.鱼卵和稚鱼的高优势度物种的季节间演替明显.春、夏、秋季鱼类浮游生物群落Margalef丰富度指数、Shannon多样性指数和Pielou均匀度指数平均值均较低,说明该海域鱼类浮游生物群落结构稳定性较低.2年间所采集物种对应的成鱼平均营养级分别为3.71和3.78,均属第三营养级中的低级肉食性鱼类,绝大多数为暖温种,无冷温性种类,表现出明显的暖温带特点.综合分析认为,人工鱼礁区鱼类浮游生物群落的多样性相对较高,这与鱼礁区流速和流场特征及复杂的空间异质性有关.     

稻鱼系统中田鱼对资源的利用及对水稻生长的影响

稻田为鱼类等水产生物提供生境,稻田养鱼在提高水稻产量的同时,通过控制病虫害的暴发以及充分利用养分来降低化肥农药的使用.但田鱼对稻田资源的摄食(浮游植物、杂草、浮萍、田螺)及利用后转化成养分对水稻生长发育的促进作用尚缺乏研究.本研究设计了2个田间试验,通过摄像观察稻鱼系统中田鱼的活动,采用稳定性同位素分析田鱼对稻田资源的摄食,并测定水稻的生长发育进程和水稻产量.结果表明: 与鱼单养处理相比,稻田养鱼显著地促进了田鱼的活动频率并扩大了田鱼的活动范围.在稻鱼共作不投喂饲料处理下,稻田中3类水生生物(浮萍、浮游植物、田螺)对田鱼食谱的贡献率分别为22.7%、34.8%和30.0%;而投喂饲料处理下,这3种水生生物对田鱼食谱的贡献率分别为8.9%、5.9% 和1.6%,饲料的贡献率为71.0%.与水稻单作比较,稻鱼共作处理显著增加水稻分蘖期和灌浆期的叶片氮含量,延长分蘖期10~12 d,并显著提高成穗率和产量.表明稻鱼系统通过田鱼摄食稻田资源并转化为水稻可利用养分,促进了水稻生长,实现了水稻产量的提升.     

温州南部沿岸海域主要鱼类的生态位及种间联结性

国内对生态位和种间关联性的研究主要集中于植物、鸟类和游泳动物群落等方面,而针对鱼类生态位和种间关联性研究鲜有报道.本文基于2015年春季(5月)和秋季(9月)温州南部沿岸海域渔业资源调查与渔获物分析,运用生态位测定、方差比率(VR)、χ²检验、联结系数(AC)、种对共同出现百分率(PC)和点相关系数(Ф)等方法对主要鱼类间的关系进行研究.结果表明: 该海域共鉴定出鱼类47种,隶属于9目27科41属,其中优势种4种,重要种9种,共占17%.通过生态位宽度聚类分析,按生态位宽度将主要鱼类划分为2类:第1类广生态位种包括龙头鱼、棘头梅童鱼、日本鳀、镰鲳、白姑鱼、六指马鲅、蓝圆鲹和带鱼;第2类狭生态位种包括海鳗、六丝矛尾鰕虎鱼、宽体舌鳎、小黄鱼和鳓.主要鱼类间的生态位重叠值为0～0.90,表明物种对资源利用的相似程度存在差异.生态位宽度较窄的宽体舌鳎和海鳗,其重叠值相对较高,说明两个物种间存在一定的竞争.利用VR分析得出主要鱼类间的关联性呈显著正相关.鉴于Ф值能降低χ²检验、联结系数(AC)、种对共同出现百分率(PC)对联结性分析的影响,故采用Ф值测定,得出63个种对为正联结,种间联结性和生态位两者分别与群落结构稳定和群落更替具有不同程度的相关性.     

The diet of native and invasive fish species along the eastern Mediterranean coast (Osteichthyes)

The opening of the Suez Canal in 1869 enabled the invasion of more than 100 alien fish species into the Mediterranean. The aim of the present study was to compare the diet of native and alien fish species and to identify possibly shared food resources. We examined the diet composition of 13 of the most abundant fish species (6 alien, 7 native) on shallow soft bottom off southern Israel. All 13 species are omnivorous/carnivorous. The native fish exhibited a wider diversity of food types than the aliens. Alien fish prey upon and are preyed by native species as well as by other alien fish. A high level of diet overlap was found among some species, the aliens Saurida lessepsianus and Scomberomorus commerson overlapped with the native Synodus saurus; and the alien Nemipterus randalli with the native species Pagrus caeruleostictus, Lithognathus mormyrus and Pagellus erythrinus. The identified diet overlap is discussed, and the possibility of competitive interactions between these species is considered.     

Personality effects on spatial learning: Comparisons between visual conditions in a weakly electric fish

Recent research has explored links between cognition and personality, with prominent hypotheses proposing that personality drives consistent individual differences in cognitive function. These hypotheses particularly expect bolder individuals to be faster, but less accurate, as a trade‐off in cognitive function. However, cognitive processes are typically interconnected and defined in more complex terms than simply speed and accuracy. Here, we present evidence that personality‐based differences in learning rates are a result of differences in decision‐making during training in a two‐alternative forced‐choice spatial memory task. This was examined in the mormyrid fish Gnathonemus petersii in the presence of light, where both vision and the electric sense are available, and in the dark, where visibility is limited and fish rely mostly on electrosensing. The species is adapted for the dark to avoid visual predators; thus, the presence of light can induce high‐risk and the dark low‐risk. We show that light conditions had little effect on learning, with bolder fish learning faster both in the light and in the dark conditions. Yet the relationship between learning rates and error rates indicates that the effect on learning is indirectly influenced by accuracy during training. Speed‐accuracy trade‐offs were not found in decision‐making, with bolder individuals deciding faster and more accurately both in the light and in the dark. Only learning strategy was affected by light conditions, with significantly more fish preferring response to place learning in the dark than in the light, where distal cues were not visible. We conclude that other than effects from the integration of visual information, bolder individuals show a consistently greater tendency to explore and find food rewards during training. This affects their decision‐making and in turn their learning performance. We highlight the complexity by which personality‐based effects are exhibited in spatial associative learning.     

Application of DNA metabarcoding on faeces to identify European catfish Silurus glanis diet

In this study, the results of conventional stomach‐content analysis are compared with the recent DNA metabarcoding approach on faeces to identify fish species consumed by non‐native European catfish Silurus glanis in the Garonne River (south‐western France), with a special emphasis on anadromous prey. Fourteen prey species were identified in the stomach contents or faeces, including four anadromous fish species. Despite higher intestine than stomach emptiness, more species were identified through faecal analysis (11 of 14) than through stomach‐content analysis (five of 14) suggesting that DNA metabarcoding on faeces is an efficient, non‐intrusive technique to study the diet of predatory fishes.