Interspecific hybridization causes long‐term phylogenetic discordance between nuclear and mitochondrial genomes in freshwater fishes

Classification, phylogeography and the testing of evolutionary hypotheses rely on correct estimation of species phylogeny. Early molecular phylogenies often relied on mtDNA alone, which acts as a single linkage group with one history. Over the last decade, the use of multiple nuclear sequences has often revealed conflict among gene trees. This observation can be attributed to hybridization, lineage sorting, paralogy or selection. Here, we use 54 groups of fishes from 48 studies to estimate the degree of concordance between mitochondrial and nuclear gene trees in two ecological grades of fishes: marine and freshwater. We test the hypothesis that freshwater fish phylogenies should, on average, show more discordance because of their higher propensity for hybridization in the past. In keeping with this idea, concordance between mitochondrial and nuclear gene trees (as measured by proportion of components shared) is on average 50% higher in marine fishes. We discuss why this difference almost certainly results from introgression caused by greater historical hybridization among lineages in freshwater groups, and further emphasize the need to use multiple nuclear genes, and identify conflict among them, in estimation of species phylogeny.     

青岛崂山青山湾人工鱼礁区及附近海域鱼卵仔稚鱼种类组成与数量分布

为研究人工鱼礁对产卵鱼类的诱集效果和庇护效应,2014—2015年对青岛崂山青山湾海域人工鱼礁区及附近海域鱼卵和仔稚鱼的种类组成和数量分布进行了水平和垂直拖网调查. 2014年春、夏、秋3个季节的7个航次调查中,共采集鱼卵7306粒、仔稚鱼52尾,隶属于4目9科11属12种;2015年同期进行的13个航次调查中,共采集鱼卵10373粒、仔稚鱼159尾,隶属于6目11科14属15种.2年间鱼卵和仔稚鱼样品均以鲈形目数量最多,鲽形目次之,其中鱼卵样品中仅有少鳞鱚和短吻红舌鳎构成优势种;仔稚鱼样品以少鳞鱚优势度最高,但不存在仔稚鱼优势种.鱼卵和稚鱼的高优势度物种的季节间演替明显.春、夏、秋季鱼类浮游生物群落Margalef丰富度指数、Shannon多样性指数和Pielou均匀度指数平均值均较低,说明该海域鱼类浮游生物群落结构稳定性较低.2年间所采集物种对应的成鱼平均营养级分别为3.71和3.78,均属第三营养级中的低级肉食性鱼类,绝大多数为暖温种,无冷温性种类,表现出明显的暖温带特点.综合分析认为,人工鱼礁区鱼类浮游生物群落的多样性相对较高,这与鱼礁区流速和流场特征及复杂的空间异质性有关.     

温州南部沿岸海域主要鱼类的生态位及种间联结性

国内对生态位和种间关联性的研究主要集中于植物、鸟类和游泳动物群落等方面,而针对鱼类生态位和种间关联性研究鲜有报道.本文基于2015年春季(5月)和秋季(9月)温州南部沿岸海域渔业资源调查与渔获物分析,运用生态位测定、方差比率(VR)、χ²检验、联结系数(AC)、种对共同出现百分率(PC)和点相关系数(Ф)等方法对主要鱼类间的关系进行研究.结果表明: 该海域共鉴定出鱼类47种,隶属于9目27科41属,其中优势种4种,重要种9种,共占17%.通过生态位宽度聚类分析,按生态位宽度将主要鱼类划分为2类:第1类广生态位种包括龙头鱼、棘头梅童鱼、日本鳀、镰鲳、白姑鱼、六指马鲅、蓝圆鲹和带鱼;第2类狭生态位种包括海鳗、六丝矛尾鰕虎鱼、宽体舌鳎、小黄鱼和鳓.主要鱼类间的生态位重叠值为0～0.90,表明物种对资源利用的相似程度存在差异.生态位宽度较窄的宽体舌鳎和海鳗,其重叠值相对较高,说明两个物种间存在一定的竞争.利用VR分析得出主要鱼类间的关联性呈显著正相关.鉴于Ф值能降低χ²检验、联结系数(AC)、种对共同出现百分率(PC)对联结性分析的影响,故采用Ф值测定,得出63个种对为正联结,种间联结性和生态位两者分别与群落结构稳定和群落更替具有不同程度的相关性.     

The diet of native and invasive fish species along the eastern Mediterranean coast (Osteichthyes)

The opening of the Suez Canal in 1869 enabled the invasion of more than 100 alien fish species into the Mediterranean. The aim of the present study was to compare the diet of native and alien fish species and to identify possibly shared food resources. We examined the diet composition of 13 of the most abundant fish species (6 alien, 7 native) on shallow soft bottom off southern Israel. All 13 species are omnivorous/carnivorous. The native fish exhibited a wider diversity of food types than the aliens. Alien fish prey upon and are preyed by native species as well as by other alien fish. A high level of diet overlap was found among some species, the aliens Saurida lessepsianus and Scomberomorus commerson overlapped with the native Synodus saurus; and the alien Nemipterus randalli with the native species Pagrus caeruleostictus, Lithognathus mormyrus and Pagellus erythrinus. The identified diet overlap is discussed, and the possibility of competitive interactions between these species is considered.     

Personality effects on spatial learning: Comparisons between visual conditions in a weakly electric fish

Recent research has explored links between cognition and personality, with prominent hypotheses proposing that personality drives consistent individual differences in cognitive function. These hypotheses particularly expect bolder individuals to be faster, but less accurate, as a trade‐off in cognitive function. However, cognitive processes are typically interconnected and defined in more complex terms than simply speed and accuracy. Here, we present evidence that personality‐based differences in learning rates are a result of differences in decision‐making during training in a two‐alternative forced‐choice spatial memory task. This was examined in the mormyrid fish Gnathonemus petersii in the presence of light, where both vision and the electric sense are available, and in the dark, where visibility is limited and fish rely mostly on electrosensing. The species is adapted for the dark to avoid visual predators; thus, the presence of light can induce high‐risk and the dark low‐risk. We show that light conditions had little effect on learning, with bolder fish learning faster both in the light and in the dark conditions. Yet the relationship between learning rates and error rates indicates that the effect on learning is indirectly influenced by accuracy during training. Speed‐accuracy trade‐offs were not found in decision‐making, with bolder individuals deciding faster and more accurately both in the light and in the dark. Only learning strategy was affected by light conditions, with significantly more fish preferring response to place learning in the dark than in the light, where distal cues were not visible. We conclude that other than effects from the integration of visual information, bolder individuals show a consistently greater tendency to explore and find food rewards during training. This affects their decision‐making and in turn their learning performance. We highlight the complexity by which personality‐based effects are exhibited in spatial associative learning.     

Evaluation of swimming performance for fish passage of longnose dace Rhinichthys cataractae using an experimental flume

The swimming performance of longnose dace Rhinichthys cataractae, the most widely distributed minnow (Cyprinidae) in North America, was assessed in relation to potential passage barriers. The study estimated passage success, maximum ascent distances and maximum sprint speed in an open‐channel flume over a range of water velocities and temperatures (10·7, 15·3 and 19·3° C). Rhinichthys cataractae had high passage success (95%) in a 9·2 m flume section at mean test velocities of 39 and 64 cm s^–1, but success rate dropped to 66% at 78 cm s^–1. Only 20% of fish were able to ascend a 2·7 m section with a mean velocity of 122 cm s^–1. Rhinichthys cataractae actively selected low‐velocity pathways located along the bottom and corners of the flume at all test velocities and adopted position‐holding behaviour at higher water velocities. Mean volitional sprint speed was 174 cm s^–1 when fish volitionally sprinted in areas of high water velocities. Swimming performance generally increased with water temperature and fish length. Based on these results, fishways with mean velocities <64 cm s^–1 should allow passage of most R. cataractae. Water velocities >100 cm s^–1 within structures should be limited to short distance (<1 m) and structures with velocities ≥158 cm s^–1 would probably represent movement barriers. Study results highlighted the advantages of evaluating a multitude of swimming performance metrics in an open‐channel flume, which can simulate the hydraulic features of fishways and allow for behavioural observations that can facilitate the design of effective passage structures.     

Home sweet home: evidence for nest‐fidelity in the rocky intertidal fish,the shanny Lipophrys pholis

The ability to be faithful to a particular area or site was analysed in the shanny Lipophrys pholis. Using passive integrated transponders, adults from a population of L. pholis at Cabo Raso, Portugal, were followed over a period of 3 years. The findings showed that site fidelity is a consistent behaviour during the breeding season with specific breeding males being found only in particular sectors within the area, and in specific nests throughout the years. The fact that, in general, L. pholis individuals were absent from the study area during the non‐breeding season and breeding males were recorded returning to the same nests and sectors for consecutive breeding seasons suggests that they have developed excellent homing abilities. Translocation data corroborate this idea showing that breeding males successfully returned to their nests after a displacement of >100 m. Altogether, these findings highlight the relevance of life‐history traits (e.g. nesting) in the conditioning of site fidelity and homing for this species of rocky intertidal fish, and more importantly, provide evidence for the need of a well‐developed navigational system.     

Tradeoffs between fine‐scale site measurements and coarse sensory data for long‐term monitoring of pulsed wetlands

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