中国大陆青冈分布区东缘大金山岛种群种子形态变异

在大陆青冈分布区东缘的大金山岛种群中按不同坡向取样,旨在揭示相对均一条件下青冈种子的形态变异及变异的来源,以从不同侧面研究环境对形态变异的作用。大金山岛种群青冈种子的长度、直径和重量分别为1.557±0.128cm、1.175±0.112cm、1.321±0.310g,处于青冈种子正常分布范围内。单颗种子的长度、直径符合正态分布,而重量则明显偏离正态分布。不同坡向青冈种子间差异很小,表明微地形的影响较小;种群变异的来源株内和株间约各占一半,说明种子表型具有一定的可塑性,主要由于种子处于植株不同部位的缘故。     

Characterization of TAP Ambr 250 disposable bioreactors,as a reliable scale‐down model for biologics process development

Demands for development of biological therapies is rapidly increasing, as is the drive to reduce time to patient. In order to speed up development, the disposable Automated Microscale Bioreactor (Ambr 250) system is increasingly gaining interest due to its advantages, including highly automated control, high throughput capacity, and short turnaround time. Traditional early stage upstream process development conducted in 2 ‐ 5 L bench‐top bioreactors requires high foot‐print, and running cost. The establishment of the Ambr 250 as a scale‐down model leads to many benefits in process development. In this study, a comprehensive characterization of mass transfer coefficient (k_La) in the Ambr 250 was conducted to define optimal operational conditions. Scale‐down approaches, including dimensionless volumetric flow rate (vvm), power per unit volume (P/V) and k_La have been evaluated using different cell lines. This study demonstrates that the Ambr 250 generated comparable profiles of cell growth and protein production, as seen at 5‐L and 1000‐L bioreactor scales, when using k_La as a scale‐down parameter. In addition to mimicking processes at large scales, the suitability of the Ambr 250 as a tool for clone selection, which is traditionally conducted in bench‐top bioreactors, was investigated. Data show that cell growth, productivity, metabolite profiles, and product qualities of material generated using the Ambr 250 were comparable to those from 5‐L bioreactors. Therefore, Ambr 250 can be used for clone selection and process development as a replacement for traditional bench‐top bioreactors minimizing resource utilization during the early stages of development in the biopharmaceutical industry. © 2017 American Institute of Chemical Engineers Biotechnol. Prog., 33:478–489, 2017     

Investigation of optical attenuation imaging using optical coherence tomography for monitoring of scars undergoing fractional laser treatment

We demonstrate the use of the near‐infrared attenuation coefficient, measured using optical coherence tomography (OCT), in longitudinal assessment of hypertrophic burn scars undergoing fractional laser treatment. The measurement method incorporates blood vessel detection by speckle decorrelation and masking, and a robust regression estimator to produce 2D en face parametric images of the attenuation coefficient of the dermis. Through reliable co‐location of the field of view across pre‐ and post‐treatment imaging sessions, the study was able to quantify changes in the attenuation coefficient of the dermis over a period of ～20 weeks in seven patients. Minimal variation was observed in the mean attenuation coefficient of normal skin and control (untreated) mature scars, as expected. However, a significant decrease (13 ± 5%, mean ± standard deviation) was observed in the treated mature scars, resulting in a greater distinction from normal skin in response to localized damage from the laser treatment. By contrast, we observed an increase in the mean attenuation coefficient of treated (31 ± 27%) and control (27 ± 20%) immature scars, with numerical values incrementally approaching normal skin as the healing progressed. This pilot study supports conducting a more extensive investigation of OCT attenuation imaging for quantitative longitudinal monitoring of scars.

En face 2D OCT attenuation coefficient map of a treated immature scar derived from the pre‐treatment (top) and the post‐treatment (bottom) scans. (Vasculature (black) is masked out.) The scale bars are 0.5 mm.     

Recording Single Neurons' Action Potentials from Freely Moving Pigeons Across Three Stages of Learning

While the subject of learning has attracted immense interest from both behavioral and neural scientists, only relatively few investigators have observed single-neuron activity while animals are acquiring an operantly conditioned response, or when that response is extinguished. But even in these cases, observation periods usually encompass only a single stage of learning, i.e. acquisition or extinction, but not both (exceptions include protocols employing reversal learning; see Bingman et al.¹ for an example). However, acquisition and extinction entail different learning mechanisms and are therefore expected to be accompanied by different types and/or loci of neural plasticity.Accordingly, we developed a behavioral paradigm which institutes three stages of learning in a single behavioral session and which is well suited for the simultaneous recording of single neurons'' action potentials. Animals are trained on a single-interval forced choice task which requires mapping each of two possible choice responses to the presentation of different novel visual stimuli (acquisition). After having reached a predefined performance criterion, one of the two choice responses is no longer reinforced (extinction). Following a certain decrement in performance level, correct responses are reinforced again (reacquisition). By using a new set of stimuli in every session, animals can undergo the acquisition-extinction-reacquisition process repeatedly. Because all three stages of learning occur in a single behavioral session, the paradigm is ideal for the simultaneous observation of the spiking output of multiple single neurons. We use pigeons as model systems, but the task can easily be adapted to any other species capable of conditioned discrimination learning.     

不同风浪条件下太湖梅梁湾光合有效辐射的衰减

基于2003年7月12～17日在太湖梅梁湾进行的连续6d原位水下光场观测资料,分析了不同风浪条件下光合有效辐射(PAR)的衰减和真光层深度,探讨了影响水下光合有效辐射的主导因子.结果表明,整个观测期间向下PAR衰减系数为2.63～4.71·m^-1(均值为3.63±0.47·m^-1),对应的真光层深度为0.98～1.75m(均值为1.29±0.18m),显示1.5m以下深度浮游植物、沉水植物基本上无法获取足够的太阳光能进行光合作用.从小风浪到中风浪、大风浪向下PAR衰减系数分别是2.63、3.72和4.37·m^-1,衰减系数分别增加了41%、66%.透明度、PAR衰减系数、真光层深度与悬浮物浓度存在显著性线性相关,并且与悬浮物中无机颗粒物相关性最好,而与叶绿素a、脱镁叶绿素及溶解性有机碳相关性很低.多元逐步线性回归表明,叶绿素a和溶解性有机碳最先被剔除方程,说明在梅梁湾由于风浪扰动引起悬浮物浓度的改变是影响水下光场的主导因素.     

Prediction of methylated CpGs in DNA sequences using a support vector machine

DNA methylation plays a key role in the regulation of gene expression. The most common type of DNA modification consists of the methylation of cytosine in the CpG dinucleotide. At the present time, there is no method available for the prediction of DNA methylation sites. Therefore, in this study we have developed a support vector machine (SVM)-based method for the prediction of cytosine methylation in CpG dinucleotides. Initially a SVM module was developed from human data for the prediction of human-specific methylation sites. This module achieved a MCC and AUC of 0.501 and 0.814, respectively, when evaluated using a 5-fold cross-validation. The performance of this SVM-based module was better than the classifiers built using alternative machine learning and statistical algorithms including artificial neural networks, Bayesian statistics, and decision trees. Additional SVM modules were also developed based on mammalian- and vertebrate-specific methylation patterns. The SVM module based on human methylation patterns was used for genome-wide analysis of methylation sites. This analysis demonstrated that the percentage of methylated CpGs is higher in UTRs as compared to exonic and intronic regions of human genes. This method is available on line for public use under the name of Methylator at http://bio.dfci.harvard.edu/Methylator/.     

Length-weight relationships of 10 fish species from the coastal waters of the East China Sea

The present study provides the length-weight relationships (LWRs) for 10 marine fish species collected from the coastal waters of the East China Sea by bottom trawl surveys. The open width of the sampling net was 40 m and the mesh size of the codend was 20 mm. Specimens were collected from November 2015 to November 2019 at seasonal intervals. The measurement accuracy of weight and length were 0.1 grams and 0.1 centimeters, respectively. This study provides new information of LWRs for nine species which have not yet been reported in FishBase. Also, this study updates the information of maximum length for two species.