龟鳖目淡水龟科系统发生关系的研究进展

淡水龟科是龟鳖目中物种数目最多、形态变异最多样的一个类群。其早期的系统学研究主要依据形态学和细胞学的特征,近年来,随着分子数据的不断增多,结合形态学等方法,淡水龟科系统发生学研究取得了诸多进展,但至今尚未有一致的结论。本文主要对近年来有关淡水龟科起源的单系性问题;潮龟属、闭壳龟属和拟水龟属重划分问题;潮龟属、草龟属和小棱背龟属属间关系问题;齿缘龟属、果龟属和东方龟属属间关系问题;齿缘龟属和木纹龟属属内种间关系问题研究进行了文献综述,以期为淡水龟科的系统发生关系和物种保护等研究提供参考。     

The evidence‐based group‐level symptom‐reduction model as the organizing principle for mental health care: time for change?

The content and organization of mental health care have been heavily influenced by the view that mental difficulties come as diagnosable disorders that can be treated by specialist practitioners who apply evidence‐based practice (EBP) guidelines of symptom reduction at the group level. However, the EBP symptom‐reduction model is under pressure, as it may be disconnected from what patients need, ignores evidence of the trans‐syndromal nature of mental difficulties, overestimates the contribution of the technical aspects of treatment compared to the relational and ritual components of care, and underestimates the lack of EBP group‐to‐individual generalizability. A growing body of knowledge indicates that mental illnesses are seldom “cured” and are better framed as vulnerabilities. Important gains in well‐being can be achieved when individuals learn to live with mental vulnerabilities through a slow process of strengthening resilience in the social and existential domains. In this paper, we examine what a mental health service would look like if the above factors were taken into account. The mental health service of the 21st century may be best conceived of as a small‐scale healing community fostering connectedness and strengthening resilience in learning to live with mental vulnerability, complemented by a limited number of regional facilities. Peer support, organized at the level of a recovery college, may form the backbone of the community. Treatments should be aimed at trans‐syndromal symptom reduction, tailored to serve the higher‐order process of existential recovery and social participation, and applied by professionals who have been trained to collaborate, embrace idiography and maximize effects mediated by therapeutic relationship and the healing effects of ritualized care interactions. Finally, integration with a public mental health system of e‐communities providing information, peer and citizen support and a range of user‐rated self‐management tools may help bridge the gap between the high prevalence of common mental disorder and the relatively low capacity of any mental health service.     

Using egg flotation and eggshell evidence to determine age and fate of Arctic shorebird nests

ABSTRACT.   Egg flotation was used to estimate incubation age and eggshell evidence was collected to determine nest fate at nests of 11 species of shorebirds on the Arctic Coastal Plain of Alaska during 2002–2004. We present egg-flotation schedules for nine species to facilitate the estimation of nest age. We evaluated the predictive ability of an egg-flotation schedule for Semipalmated Sandpipers ( Calidris pusilla ) and were able to estimate incubation age within ∼1–3 d of the assumed age. Patterns of eggshell evidence were similar across species, with eggshell fragments (1–5 mm) present at most successful nests (96%) and eggshell tops or bottoms present only at successful nests. We determined nest fate independently of eggshell evidence and then used discriminant function analysis to predict the probability of correctly classifying a nest's fate using different types of eggshell evidence. The use of eggshell fragment evidence resulted in the correct classification of the fate of all 11 species of shorebirds in 92% of the cases. Both the egg-flotation technique and eggshell evidence can be used in future studies to calculate accurate measures of reproductive success needed for ecological investigations of shorebirds.     

The Science and Philosophy of a Method for Assessing Environmental Causes

When an environmental impairment has been identified, it becomes necessary to identify the cause so that an appropriate action can be planned. However, causation is difficult to establish—both conceptually and in practice. To ensure that the U.S. Environmental Protection Agency's (USEPA's) method for causal assessment is appropriate and defensible, we reviewed concepts of causation from philosophers, statisticians, epidemiologists, and others. This article summarizes the results of that review and explains how it relates to the USEPA's method. We include a five-step process: (1) identify alternative candidate causes; (2) logically eliminate when possible; (3) diagnose when possible; (4) analyze the strength of evidence for remaining candidate causes; and (5) identify the most likely cause. We also encourage three practices: (1) use a consistent process; (2) do not claim proof of causation; and (3) document the evidence and inferences. This approach allows assessors to identify the most likely cause or, failing that, to reduce the set of possible causes and identify information needs for another iteration of causal assessment.     

Phylogeny of Barnadesioideae (Asteraceae) inferred from DNA sequence data and morphology

Subfamily Barnadesioideae (Asteraceae) consists of nine genera and 91 species endemic to South America. They include annual and perennial herbs, arching shrubs and trees up to 30 m tall. Presumed sister to all other Asteraceae, its intergeneric relationships are key to understanding the early evolution of the family. Results of the only molecular study on the subfamily conflict with relationships inferred from morphology. We investigate inter- and intrageneric relationships in Barnadesioideae with novel DNA sequence data and morphological characters using parsimony, likelihood and Bayesian inference. All results verify Barnadesioideae as monophyletic and sister to the rest of the family. A basal split within the subfamily is recognized, with Chuquiraga, Doniophyton and Duseniella in one clade, and Arnaldoa, Barnadesia, Dasyphyllum, Fulcaldea, Huarpea and possibly Schlechtendalia in another. The largest genus, Dasyphyllum, is revealed as biphyletic with the two clades separating along subgeneric and geographic lines. Schlechtendalia, suggested as the earliest diverging lineage of the subfamily by morphological studies and parsimony analyses, is found in a more derived position under model-based inference methods. Competing phylogenetic hypotheses, both previous and present, are evaluated using likelihood-based tests. Evolutionary trends within Barnadesioideae are inferred: hummingbird pollination has developed convergently at least three times. An early vicariance in the subfamily’s distribution is revealed. X = 9 is supported as the ancestral base chromosome number for both Barnadesioideae and the family as a whole.     

Reconstruction of Pathways Associated with Amino Acid Metabolism in Human Mitochondria

We have used a bioinformatics approach for the identification and reconstruction of metabolic pathways associated with amino acid metabolism in human mitochon- dria. Human mitochondrial proteins determined by experimental and computa- tional methods have been superposed on the reference pathways from the KEGG database to identify mitochondrial pathways. Enzymes at the entry and exit points for each reconstructed pathway were identified, and mitochondrial solute carrier proteins were determined where applicable. Intermediate enzymes in the mito- chondrial pathways were identified based on the annotations available from public databases, evidence in current literature, or our MITOPRED program, which pre- dicts the mitochondrial localization of proteins. Through integration of the data derived from experimental, bibliographical, and computational sources, we recon- structed the amino acid metabolic pathways in human mitochondria, which could help better understand the mitochondrial metabolism and its role in human health.     

A new luciferase immunoprecipitation system assay provided serological evidence for missed diagnosis of severe fever with thrombocytopenia syndrome

Severe fever with thrombocytopenia syndrome (SFTS), caused by SFTS virus (SFTSV) infection, was first reported in 2010 in China with an initial fatality of up to 30%. The laboratory confirmation of SFTSV infection in terms of detection of viral RNA or antibody levels is critical for SFTS diagnosis and therapy. In this study, a new luciferase immunoprecipitation system (LIPS) assay based on pREN2 plasmid expressing SFTSV NP gene and tagged with Renilla luciferase (Rluc), was established and used to investigate the levels of antibody responses to SFTSV. Totally 464 serum samples from febrile patients were collected in the hospital of Shaoxing City in Zhejiang Province in 2019. The results showed that 82 of the 464 patients (17.7%) had antibody response to SFTSV, which were further supported by immunofluorescence assays (IFAs). Further, qRT-PCR and microneutralization tests showed that among the 82 positive cases, 15 patients had viremia, 10 patients had neutralizing antibody, and one had both (totally 26 patient). However, none of these patients were diagnosed as SFTS in the hospital probably because of their mild symptoms or subclinical manifestations. All the results indicated that at least the 26 patients having viremia or neutralizing antibody were the missed diagnosis of SFTS cases. The findings suggested the occurrence of SFTS and the SFTS incidence were higher than the reported level in Shaoxing in 2019, and that LIPS may provide an alternative strategy to confirm SFTSV infection in the laboratory.     

大沽夹河清洋河段生态健康的干扰因子识别

大沽夹河清洋河段生态健康的生物学评价结果为“很差”。大沽夹河清洋河段生态健康的干扰因子识别,旨在为清洋河段的生态健康的恢复决策提供科学指导。通过文献调查与现场考察、观测和采样,获得相关证据。利用备选干扰因子列举、备选干扰因子排除和证据力度分析的识别方法,获得下列结论：（1）清洋河段生态健康损伤的主要干扰因子是径流改变引起的适宜栖息地丧失、营养过剩引起的总氨增加、营养过剩引起的藻类适度生长和径流改变引起的藻类适度生长;次要干扰因子是TSS增加引起的藻类适度生长和TSS增加引起的沉积增加。（2）调控过闸、过坝径流,使河道径流量及其变化贴近自然过程,对入河污水进行预处理,降低NH3-N和悬浮物含量,是恢复清洋河段生态健康的主要对策。（3）今后,应重视发展干扰因子识别过程中的定量技术,增强识别过程的客观性,以更加准确地识别干扰因子。     

A geography‐based critique of new US biofuels regulations

The new renewable fuels standard (RFS 2) aims to distinguish corn‐ethanol that achieves a 20% reduction in greenhouse gas (GHG) emissions compared with gasoline. Field data from Kim et al. (2009) and from our own study suggest that geographic variability in the GHG emissions arising from corn production casts considerable doubt on the approach used in the RFS 2 to measure compliance with the 20% target. If regulators wish to require compliance of fuels with specific GHG emission reduction thresholds, then data from growing biomass should be disaggregated to a level that captures the level of variability in grain corn production and the application of life cycle assessment to biofuels should be modified to capture this variability.