水稻驯化与长江文明

水稻(即亚洲栽培稻Oryza sativa)是世界上最重要的粮食作物之一, 全球有超过半数以上人口以稻米为食。关于水稻是何时、何地、在什么环境下开始驯化等问题一直是学术界关注的热点。得益于分析技术的进步, 近年来考古学和遗传学研究在水稻驯化起源问题上取得了重要进展。本文简要综述了有关长江流域的水稻驯化起源的遗传学和考古学的研究进展, 并讨论了水稻驯化与稻作文化及长江文明的关系。遗传学研究结果认为水稻(粳稻)最早起源于中国长江流域及以南地区(珠江流域), 考古学证据则表明水稻最先于10,000-8,000 BP在中国长江流域被驯化, 水稻驯化和稻作农业的发展催生了长江文明。这些进展促进了我们对水稻驯化、稻作文化和长江文明的认识, 对长江流域重要植物资源的保护也有启示意义。     

Optimal promising zone designs

Clinical trials with adaptive sample size reassessment based on an unblinded analysis of interim results are perhaps the most popular class of adaptive designs (see Elsäßer et al., 2007). Such trials are typically designed by prespecifying a zone for the interim test statistic, termed the promising zone, along with a decision rule for increasing the sample size within that zone. Mehta and Pocock (2011) provided some examples of promising zone designs and discussed several procedures for controlling their type‐1 error. They did not, however, address how to choose the promising zone or the corresponding sample size reassessment rule, and proposed instead that the operating characteristics of alternative promising zone designs could be compared by simulation. Jennison and Turnbull (2015) developed an approach based on maximizing expected utility whereby one could evaluate alternative promising zone designs relative to a gold‐standard optimal design. In this paper, we show how, by eliciting a few preferences from the trial sponsor, one can construct promising zone designs that are both intuitive and achieve the Jennison and Turnbull (2015) gold‐standard for optimality.     

脆木耳生物学特性及驯化栽培

对采自海南省白沙县鹦哥岭阔叶树腐木上的标本,根据形态学特征和多基因分析,鉴定为脆木耳Auricularia fibrillifera,经分离纯化获得纯菌株作为实验材料,为了充分利用和开发木耳属资源,首次对该种的生物学特性和驯化栽培进行了研究。研究不同碳源、氮源、无机盐和生长因子在固体培养条件下对脆木耳菌丝生长的影响,对以上4个因素进行单因素试验,从中选出3个最优的水平进行正交试验。结果表明：脆木耳菌丝最适生长温度为33℃,最佳碳源为麦芽糖,最佳氮源为牛肉粉,最佳无机盐添加量为1.5% PO₄^3--1% Mg²⁺,最佳生长因子为玉米汁。驯化栽培过程中,栽培配方为：木屑78%,麸皮20%,石膏粉1%,石灰粉1%,发菌温度为22℃可使脆木耳菌丝在40d左右满袋,且生长旺盛,可培育出子实体。     

Characterizing Mutational Signatures in Human Cancer Cell Lines Reveals Episodic APOBEC Mutagenesis

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盐度对黄鳝摄食节律和排粪时间的影响

室内研究了不同盐度(0、2、4、6、8、10和12 g·L^-1)对经过摄食驯化的黄鳝摄食节律和排粪时间的影响.结果表明：盐度对黄鳝的摄食节律没有显著影响（P>0.05）,但不同时段的摄食比例存在极显著差异(P<0.01),每昼夜只有1个摄食高峰期.黄鳝排粪分批次完成,不同盐度下其批次不同.在盐度为0（对照）、2、8、10和12 g·L^-1条件下黄鳝均为3批排粪,在盐度4和6 g·L^-1下排粪批次分别为4批和5批.不同盐度下黄鳝的同批排粪时间均存在极显著差异(P<0.01),对照组的前3批排粪时间极显著高于其它组(P<0.01),即对照组前3批排粪相对推迟4～25 h.研究结果将为盐碱、滩涂水域人工养殖黄鳝的摄食管理和水质调控提供理论依据.     

Influence of plant domestication on plant-pollinator interactions: Floral attributes and floral visitor communities in wild and cultivated squash plants

Premise

Domestication of plant species results in phenotypic modifications and changes in biotic interactions. Most studies have compared antagonistic plant-herbivore interactions of domesticated plants and their wild relatives, but little attention has been given to how domestication influences plant-pollinator interactions. Floral attributes and interactions of floral visitors were compared between sister taxa of the genus Cucurbita (Cucurbitaceae), the domesticated C. moschata, C. argyrosperma ssp. argyrosperma and its wild progenitor C. argyrosperma ssp. sororia in the place of origin.

Methods

We conducted univariate and multivariate analyses to compare floral morphological traits and analyzed floral reward (nectar and pollen) quantity and quality between flowers of wild and domesticated Cucurbita taxa. Staminate and pistillate flowers of all three taxa were video recorded, and visitation and behavior of floral visitors were registered and analyzed.

Results

Most floral morphological characteristics of flowers of domesticated taxa were larger in both staminate and pistillate flowers. Staminate and pistillate flowers presented distinct correlations between floral traits and integration indices between domesticated and wild species. Additionally, pollen quantity and protein to lipid ratio were greater in domesticated species. Cucurbit pollen specialists, Eucera spp., had the highest probability of visit for all Cucurbita taxa.

Conclusions

We provide evidence that floral traits of domesticated and wild Cucurbita species experienced different selection pressures. Domesticated Cucurbita species may have more resources invested towards floral traits, thereby increasing attractiveness to pollinators and potentially plant reproductive success. Wild ancestor plant populations should be conserved in their centers of origin to preserve plant-pollinator interactions.     

卵孢侧耳野生菌株人工栽培及营养成分分析

采自西藏日喀则地区的两份野生蘑菇标本及其分离菌株,通过形态学及基于ITS序列的分子系统发育分析鉴定为卵孢侧耳Pleurotus placentodes。该物种在2016年首次报道于中国。人工驯化栽培试验表明卵孢侧耳可以在人工条件下出菇,生长周期80-95d;初步的营养成分分析表明,卵孢侧耳蛋白质、粗多糖、氨基酸含量比香菇、糙皮侧耳（平菇）、金针菇、柱状田头菇（茶树菇）等都高,尤其含有较高的组氨酸和丰富的矿物质,如铁、钙、锌等。卵孢侧耳可作为新的食用菌进行开发利用。     

Chromosome-level wild Hevea brasiliensis genome provides new tools for genomic-assisted breeding and valuable loci to elevate rubber yield

The rubber tree (Hevea brasiliensis) is grown in tropical regions and is the major source of natural rubber. Using traditional breeding approaches, the latex yield has increased by sixfold in the last century. However, the underlying genetic basis of rubber yield improvement is largely unknown. Here, we present a high-quality, chromosome-level genome sequence of the wild rubber tree, the first report on selection signatures and a genome-wide association study (GWAS) of its yield traits. Population genomic analysis revealed a moderate population divergence between the Wickham clones and wild accessions. Interestingly, it is suggestive that H. brasiliensis and six relatives of the Hevea genus might belong to the same species. The selective sweep analysis found 361 obvious signatures in the domesticated clones associated with 245 genes. In a 15-year field trial, GWAS identified 155 marker–trait associations with latex yield, in which 326 candidate genes were found. Notably, six genes related to sugar transport and metabolism, and four genes related to ethylene biosynthesis and signalling are associated with latex yield. The homozygote frequencies of the causal nonsynonymous SNPs have been greatly increased under selection, which may have contributed to the fast latex yield improvement during the short domestication history. Our study provides insights into the genetic basis of the latex yield trait and has implications for genomic-assisted breeding by offering valuable resources in this new domesticated crop.     

Modelling and analyzing density-dependent population processes: Comparison between wild and laboratory strains of the bean weevil,Callosobruchus chinensis (L.)

Three models were constructed for analyzing the population characteristics ofC. chinensis on stored beans; model A describing the whole reproductive process with a single equation, model B describing the three age-specific processes (oviposition, egg survival and larval survival) with separate equations, and model C which describes all these processes not for the whole habitat but for the individual beans comprizing it. The logit equation was employed here as a common basis to describe the density-response relationship involved. All three models showed very good fit to the experimental data obtained for both laboratory and wild strains of the weevil. The parameter values characterizing the population dynamics were, however, widely different between the two strains; the laboratory one which had been reared for some 500 generations showed significantly higher reproductive capacity, less sensitive and gentler response to crowding in both adult and egg stages, and more uniform egg distribution among individual beans, as compared with the wild strain newly introduced. Sensitivity analyses using these models suggested that these changes in population characteristics have been attained by the process of domestication or adaptation to stable laboratory conditions through a long period of time. This process seemed in effect to have optimized the population's performances in the laboratory environment. Evolutionary significance of such optimization was discussed with reference to the selection pressure which may have acted upon individuals.