高通量测序探究啮食聚苯乙烯泡沫塑料黄粉虫的肠道菌群结构

【目的】塑料废物处理是世界环境难题,近期有研究报道黄粉虫可啮食聚苯乙烯泡沫塑料,肠道细菌可能在黄粉虫生物降解塑料的过程中起重要作用。本文以啮食聚苯乙烯泡沫塑料的黄粉虫幼虫(Tenebrio molitor)为材料,探究其肠道细菌的多样性和细菌群落组成。【方法】分别以聚苯乙烯泡沫塑料(聚苯乙烯组)和纸片(对照组)为唯一食物来源喂养黄粉虫幼虫,在90 d后采集粪便样品,对16S r RNA基因V3-V4区进行PCR扩增和高通量测序,并以PICRUSt进行肠道菌群的功能预测。【结果】饲喂期间,两组黄粉虫均正常存活,部分幼虫完成变态发育。泡沫塑料有明显的减重。样本测序共得到144 258条有效序列,179个OTU,共涉及10个门111个属。其中,聚苯乙烯组黄粉虫的肠道细菌在属水平高丰度的是Alcaligenes(35.9%)、Brevundimonas(12.3%)、Myroides(10.3%)。基于16S r RNA基因序列的功能预测表明,在聚苯乙烯组中,芳香类化合物的降解基因被明显富集。【结论】高通量测序揭示了啮食聚苯乙烯泡沫塑料的黄粉虫肠道菌群的多样性,这对从黄粉虫肠道中分离高效降解聚苯乙烯的细菌具有指导意义。     

High‐fat diet‐induced dysbiosis mediates MCP‐1/CCR2 axis‐dependent M2 macrophage polarization and promotes intestinal adenoma‐adenocarcinoma sequence

High‐fat diet (HFD) is a well‐known risk factor for gut microbiota dysbiosis and colorectal cancer (CRC). However, evidence relating HFD, gut microbiota and carcinogenesis is limited. Our study aimed to demonstrate that HFD‐induced gut dysbiosis promoted intestinal adenoma‐adenocarcinoma sequence. In clinical study, we found that HFD increased the incidence of advanced colorectal neoplasia (AN). The expression of monocyte chemoattractant protein 1 (MCP‐1), CC chemokine receptor 2 (CCR2) and CD163 in CRC patients with HFD was significantly higher than that in CRC patients with normal diet. When it comes to the Apc^min/+ mice, HFD consumption could induce gut dysbiosis and promote intestinal carcinogenesis, accompanying with activation of MCP‐1/CCR2 axis that recruited and polarized M2 tumour‐associated macrophages. Interestingly, transfer of faecal microbiota from HFD‐fed mice to another batch of Apc^min/+ mice in the absence of HFD could also enhance carcinogenesis without significant body weight gain and induced MCP‐1/CCR2 axis activation. HFD‐induced dysbiosis could also be transmitted. Meanwhile, antibiotics cocktail treatment was sufficient to inhibit HFD‐induced carcinogenesis, indicating the vital role of dysbiosis in cancer development. Conclusively, these data indicated that HFD‐induced dysbiosis accelerated intestinal adenoma‐adenocarcinoma sequence through activation of MCP‐1/CCR2 axis, which would provide new insight into better understanding of the mechanisms and prevention for HFD‐related CRC.     

人类微生物组测序与比较研究

人体微生物群系影响人类的健康,与人类的各种疾病,如肥胖、糖尿病、冠心病、结肠癌等的发生具有密切的关系.近年来,人类微生物组研究日益受到重视.综述人类微生物组的测序和比较研究进展.     

水果害虫斑翅果蝇体内微生物菌群研究进展

斑翅果蝇是一种在全球范围内造成危害的重要水果害虫,其主要分布于亚、美、欧三大洲。斑翅果蝇的产卵器可以刺破水果表皮,将卵产在未完全成熟的水果中,卵孵化为幼虫后,幼虫取食水果,直接降低产量,从而对水果产业造成损失。近年以来,越来越多的研究表明昆虫微生物对宿主昆虫影响很大。例如昆虫微生物可以调控寄主昆虫的生长发育、个体适应性及生殖等。昆虫与其共生微生物间的关系成为昆虫生物学研究的热点内容。本文综述了近些年关于斑翅果蝇微生物多样性的研究,探讨了微生物菌群及内共生菌Wolbachia对斑翅果蝇生长发育、行为、生殖、抗病毒等的影响,以便为寻找控制斑翅果蝇种群的策略提供参考依据。     

广东本地及移民学龄儿童饮食结构和肠道菌群差异分析

[目的]探究广东本地及移民学龄儿童的饮食结构及肠道菌群分布的差异.[方法]以广东深圳为采样点,随机抽样选取48名广东本地儿童和34名移民儿童,进行膳食问卷调查和晨便采集.采用Mann-Whitney U test分析本地及移民儿童饮食因子摄入频率的差异,并使用Illumina Miseq高通量测序技术对儿童的肠道菌群进...     

Top‐down systems biology integration of conditional prebiotic modulated transgenomic interactions in a humanized microbiome mouse model

Gut microbiome–host metabolic interactions affect human health and can be modified by probiotic and prebiotic supplementation. Here, we have assessed the effects of consumption of a combination of probiotics (Lactobacillus paracasei or L. rhamnosus) and two galactosyl‐oligosaccharide prebiotics on the symbiotic microbiome–mammalian supersystem using integrative metabolic profiling and modeling of multiple compartments in germ‐free mice inoculated with a model of human baby microbiota. We have shown specific impacts of two prebiotics on the microbial populations of HBM mice when co‐administered with two probiotics. We observed an increase in the populations of Bifidobacterium longum and B. breve, and a reduction in Clostridium perfringens, which were more marked when combining prebiotics with L. rhamnosus. In turn, these microbial effects were associated with modulation of a range of host metabolic pathways observed via changes in lipid profiles, gluconeogenesis, and amino‐acid and methylamine metabolism associated to fermentation of carbohydrates by different bacterial strains. These results provide evidence for the potential use of prebiotics for beneficially modifying the gut microbial balance as well as host energy and lipid homeostasis.     

西双版纳热带雨林中两种生态型蕨类植物的光合特性比较研究

通过比较分布于西双版纳热带雨林林下生境中的附生鸟巢蕨（Neottopteris nidus）和地生网脉铁角蕨（Asplenium finlaysonianum）的光合特征和光合诱导特性,来研究不同生态型蕨类植物的光斑利用策略。研究结果表明,2种蕨类植物的最大净光合速率、暗呼吸速率、表观量子效率、光饱和点和光补偿点没有显著差异,但网脉铁角蕨的最大气孔导度远远高于鸟巢蕨,表明后者具有更强的光合水分利用效率。在暗处理3／J＇,时接着光照（光强为20I~mol-m-2,s。‘）30分钟后,网脉铁角蕨的初始气孔导度显著高于鸟巢蕨。连续照射饱和强光后,网脉铁角蕨达到最大净光合速率50％（T50％）和90％的时间（T90%）比鸟巢蕨短：网脉铁角蕨和鸟巢蕨的T50%分别为0．57和5．31分钟,T90％分别为5．85和26．33分钟。诱导过程中,气孔导度对强光的响应明显滞后于净光合速率。鸟巢蕨达到最大气孔导度的时间明显比网脉铁角蕨慢,但在光合诱导消失过程中2种蕨类植物的光合诱导维持能力却没有显著差异。上述结果表明,与大多数地生林下植物（如网脉铁角蕨）相比,附生鸟巢蕨的水分保护比碳获得更重要,但却限制了附生蕨对光斑的利用。     

人类肠道菌群与疾病关系的元基因组学研究进展

人体的生理健康除受自身基因的调控外,还受到肠道菌群的影响。人体肠道内的细菌有1 000～1 150种,其中160种为优势菌种,存在不同类型的生态学相互作用。肠道细菌的300多万个基因被视为人类的"第二基因组",在正常人体健康状态下,肠道微生物种群处于平衡状态,而在宿主患病期,菌群失调或紊乱。采用元基因组学研究能在更高更复杂层次上揭示肠道菌群之间的生命运动规律。本文系统综述了元基因组学对肠道菌群与肥胖、糖尿病、炎症性肠病等疾病之间关系的研究进展。     

肠道菌群与人体代谢

人体代谢是人为了适应环境变化通过自身与微生物基因组共调节产生的所有复杂化学反应的总称。无论疾病与否,规模宏大而复杂的细菌库——肠道菌群都直接参与人体多种代谢过程。肠道菌群在人体内形成了错综复杂的微生态系统,与人类共同变化应对外界因素,人体代谢平衡状况与肠道菌群的结构组成变化密不可分。研究肠道菌群与人体代谢的相关性,对于人类健康有重要意义。     

Kinship,inbreeding and fine‐scale spatial structure influence gut microbiota in a hindgut‐fermenting tortoise

Herbivorous vertebrates rely on complex communities of mutualistic gut bacteria to facilitate the digestion of celluloses and hemicelluloses. Gut microbes are often convergent based on diet and gut morphology across a phylogenetically diverse group of mammals. However, little is known about microbial communities of herbivorous hindgut‐fermenting reptiles. Here, we investigate how factors at the individual level might constrain the composition of gut microbes in an obligate herbivorous reptile. Using multiplexed 16S rRNA gene sequencing, we characterized the faecal microbial community of a population of gopher tortoises (Gopherus polyphemus) and examined how age, genetic diversity, spatial structure and kinship influence differences among individuals. We recovered phylotypes associated with known cellulolytic function, including candidate phylum Termite Group 3, suggesting their importance for gopher tortoise digestion. Although host genetic structure did not explain variation in microbial composition and community structure, we found that fine‐scale spatial structure, inbreeding, degree of relatedness and possibly ontogeny shaped patterns of diversity in faecal microbiomes of gopher tortoises. Our findings corroborate widespread convergence of faecal‐associated microbes based on gut morphology and diet and demonstrate the role of spatial and demographic structure in driving differentiation of gut microbiota in natural populations.