Pretreatment of lignocellulosic biomass using ultrasound aiming at obtaining fermentable sugar

This study aims to evaluate the activity of the cellulase enzyme forward the use of ultrasound technology in different conditions of temperature, pH and exposure time, as well, to match the steps of pretreatment and enzymatic hydrolysis in one step. A central composite design (CCRD) and response surface analysis were used to evaluate the effect of ultrasound power, temperature and pH on enzyme activity. Optimum condition in the studied range was 30% for ultrasound power, pH 4.6 and 50?°C, yielding an enzyme activity of 15.5 UPF/mL. From this, we carried out kinetics of enzymatic hydrolysis on filter paper and bagasse malt, in optimized conditions. Total reducing sugars (TRS) were 3.85 and 0.46?mg/mL when the filter paper and bagasse malt were used as substrate, respectively. Ultrasound showed to be a good technology to increase the enzyme activity aiming to intensify enzymatic processes.     

FNA diagnosis of poorly differentiated thyroid carcinoma. A review of the recent literature

Poorly differentiated thyroid carcinoma (PDTC) is a follicular cell‐derived tumour that was recognised as a distinct entity by the World Health Organisation in 2004. The natural history and pathological features of PDTC are reported to be intermediate between those of well‐differentiated and undifferentiated (anaplastic) thyroid carcinomas. Preoperative identification of PDTC could facilitate better initial patient management in many cases, namely more extensive surgery, without any delay. However, according to some experts, a diagnosis of PDTC can only be rendered on histologic specimens based on criteria recommended in the Turin proposal. Although high‐grade features (namely necrosis and mitoses) can be recognised in FNA material, other cytomorphological features have limited value for the preoperative diagnosis of PDTC and specific features for a definitive diagnosis of PDTC have not yet been clearly defined. Here, we review the current status and future prospects for cytological recognition of PDTC; we emphasise the features that should raise suspicion of this rare condition in FNA cytology and provide an update on molecular features and management of PDTC. Despite proposed histological criteria for the diagnosis of PDTC, its recognition on routine thyroid cytology presents a notable challenge. Current and future advances in molecular testing could contribute to the cytological diagnosis of PDTC.     

Enantioselective synthesis of (S)‐naproxen using immobilized lipase on chitosan beads

S‐naproxen by enantioselective hydrolysis of racemic naproxen methyl ester was produced using immobilized lipase. The lipase enzyme was immobilized on chitosan beads, activated chitosan beads by glutaraldehyde, and Amberlite XAD7. In order to find an appropriate support for the hydrolysis reaction of racemic naproxen methyl ester, the conversion and enantioselectivity for all carriers were compared. In addition, effects of the volumetric ratio of two phases in different organic solvents, addition of cosolvent and surfactant, optimum pH and temperature, reusability, and inhibitory effect of methanol were investigated. The optimum volumetric ratio of two phases was defined as 3:2 of aqueous phase to organic phase. Various water miscible and water immiscible solvents were examined. Finally, isooctane was chosen as an organic solvent, while 2‐ethoxyethanol was added as a cosolvent in the organic phase of the reaction mixture. The optimum reaction conditions were determined to be 35 °C, pH 7, and 24 h. Addition of Tween‐80 in the organic phase increased the accessibility of immobilized enzyme to the reactant. The optimum organic phase compositions using a volumetric ratio of 2‐ethoxyethanol, isooctane and Tween‐80 were 3:7 and 0.1% (v /v/v), respectively. The best conversion and enantioselectivity of immobilized enzyme using chitosan beads activated by glutaraldehyde were 0.45 and 185, respectively.     

In silico approach to ascertain the calcium dependent role of Plasmodium falciparum SERA5

The P. falciparum serine repeat antigen (PfSERA5) is the most abundantly expressed protein in the parasitophorous vacuole during the asexual blood stage and serves as both drug and vaccine target. The processed central fragment (56 KDa) of PfSERA5 is implicated to play an important role in parasite exit (egress) during schizont rupture from erythrocytes. Structural characterization of its enzymatic domain supports protease-like function for this central domain. The understanding of exact functional role of PfSERA5 in parasite egress remains unconfirmed as recent studies also indicate an indispensable non-catalytic role for PfSERA5 putative enzyme domain in the blood stage. No structural insight into PfSERA5 prodomain is available. Structure prediction of PfSERA5 prodomain using in silico approach in our study, showed it to have structural similarity with calcium-binding proteins. An earlier observation of steep rise in intracellular calcium concentration as an important factor in egress makes the prodomain calcium-binding role significant. The implication of calcium on structure and activity of PfSERA5 putative enzyme domain is also unknown, and such information would aid to substantiating any calcium-dependent effects on PfSERA5. To understand this, we performed molecular dynamic (MD) simulation both in the presence and absence of calcium. MD results show secondary structure conformational differences in local regions of protein structure. Our results support calcium to be an important parameter for stability and function of PfSERA5. This computational assessment suggest a need to design future experiments like calcium-dependent inhibition studies to reveal exact functional role of PfSERA5 in parasite egress.     

Purification,structural features,antioxidant and moisture-preserving activities of an exopolysaccharide from Lachnum YM262

A water-soluble exopolysaccharide, designated as LEP-2a, was isolated from Lachnum YM262 and purified by DEAE-Cellulose 52 and Sepharose CL-6B chromatographic columns. LEP-2a was a homogeneous polysaccharide, with a molecular weight of 1.52 × 10⁵ Da. It was composed of mannose and galactose in a molar ratio of 20.6:1.0. Its structural features were investigated and elucidated by methylation analysis, periodate oxidation and Smith degradation, FT-IR and NMR spectroscopy. Based on obtained data, the backbone of LEP-2a consisted of 1,2-linked-α-d-mannose, 1,3-linked-α-d-mannose, 1,2,6-linked-α-d-mannose and 1,3-linked-β-d-galactose and the side chains were attached to the backbone at O-6 position of 1,2,6-linked-α-d-mannose. In vitro antioxidant activity assay proved that LEP-2a possessed significant scavenging activities on superoxide, hydroxyl and DPPH radical. Furthermore, LEP-2a had strong in vitro moisture-absorption and -retention capacities as compared to chitosan and glycerol. These results suggested that LEP-2a might have a good potential to be applied as a multifunctional cosmetic additive in cosmetics.     

异戊二烯合成酶研究进展

异戊二烯(Isoprene)的排放具有特殊的生物学功能,对大气环境具有重要影响,另外,异戊二烯也是一种具有广泛用途的化合物。在生物体内,异戊二烯是由异戊二烯合成酶(Isoprene synthase,Isps)催化烯丙基二磷酸(Dimethylallyl diphosphate,DMAPP)脱去焦磷酸(Pyrophosphate)而生成的。因此,作为异戊二烯合成过程中的关键酶,Isps在异戊二烯的自然排放和生物合成过程都发挥着重要的作用,对Isps的研究具有非常重要的意义。到目前为止,已经在多种植物中发现了该酶,研究表明,来源于不同生物的异戊二烯合成酶具有保守的结构特征和相似的生化性质。文中就Isps的最新研究进展进行综述,包括比较分析不同生物来源Isps的生化特征和结构特征,探讨催化机制,并对该酶在生物工程领域的应用进行展望。     

Deubiquitinating enzymes (DUBs): Regulation,homeostasis, and oxidative stress response

Ubiquitin signaling is a conserved, widespread, and dynamic process in which protein substrates are rapidly modified by ubiquitin to impact protein activity, localization, or stability. To regulate this process, deubiquitinating enzymes (DUBs) counter the signal induced by ubiquitin conjugases and ligases by removing ubiquitin from these substrates. Many DUBs selectively regulate physiological pathways employing conserved mechanisms of ubiquitin bond cleavage. DUB activity is highly regulated in dynamic environments through protein–protein interaction, posttranslational modification, and relocalization. The largest family of DUBs, cysteine proteases, are also sensitive to regulation by oxidative stress, as reactive oxygen species (ROS) directly modify the catalytic cysteine required for their enzymatic activity. Current research has implicated DUB activity in human diseases, including various cancers and neurodegenerative disorders. Due to their selectivity and functional roles, DUBs have become important targets for therapeutic development to treat these conditions. This review will discuss the main classes of DUBs and their regulatory mechanisms with a particular focus on DUB redox regulation and its physiological impact during oxidative stress.     

Growth ring analysis of multiple dicotyledonous herb species—A novel community-wide approach

Longevity is a key demographic characteristic of herbaceous plants, but often unknown. While root or rhizome growth ring analysis may allow assessment plant longevity directly and conveniently, so far it has only been used in a few case studies of herbaceous dicotyledonous species. To evaluate whether growth ring analysis is applicable to a large spectrum of herbaceous dicotyledonous plant species, we used plant communities of varying species richness in a 12-year-old grassland biodiversity experiment (Jena Experiment). Cross-sections of the oldest available part of the plants were analysed for all available dicotyledonous perennial herb species (S = 37), which represented three functional groups: legumes, small herbs and tall herbs. We studied 1664 individuals representing the genet in clearly distinguishable plant individuals, and the ramet in clonally growing plant species.Roots of eleven species with permanent primary root were harvested. They showed clearly visible growth rings. Longevity was extended with a mean age of 4.0 years (SE = 0.3). Seven species, which also had a permanent primary root, showed less distinct growth rings. They were shorter-lived (mean age 3.0 years (SE = 0.3)). In six species with obligate clonal growth mostly rhizomes were sampled, but individuals were still identifiable due to their growth habit. For these species growth rings were clearly visible. Longevity of rhizomes was extended (mean age 3.3 years (SE = 0.5)). In 13 species with obligate clonal growth also rhizomes were sampled, but plant individuals were not identifiable. For these species longevity was low (mean age 2.1 years (SE = 0.2)). Community mean age was significantly lower when small herbs were present and higher when tall herbs were present, while legumes had no effect on community mean age. In summary, anatomical analysis of roots and rhizomes is a suitable tool to study the population age structure of a large spectrum of perennial dicotyledonous herbaceous species and therefore opens new perspectives for demographic studies at the community level.     

Intravascular Optical Coherence Tomography Image Segmentation Based on Support Vector Machine Algorithm

Intravascular optical coherence tomography (IVOCT) is becoming more and more popular in clinical diagnosis of coronary atherosclerotic. However, reading IVOCT images is of large amount of work. This article describes a method based on image feature extraction and support vector machine (SVM) to achieve semi-automatic segmentation of IVOCT images. The image features utilized in this work including light attenuation coefficients and image textures based on gray level co-occurrence matrix. Different sets of hyper-parameters and image features were tested. This method achieved an accuracy of 83% on the test images. Single class accuracy of 89% for fibrous, 79.3% for calcification and 86.5% lipid tissue. The results show that this method can be a considerable way for semi-automatic segmentation of atherosclerotic plaque components in clinical IVOCT images.     

纳米SiO2固定化β-葡萄糖苷酶及其在双相体系中水解大豆异黄酮的工艺研究

纳米材料因其大比表面积、强吸附能力、高机械强度及易分散等特性而备受催化剂载体领域研究者的关注。本文采用纳米SiO2为载体,通过化学修饰将其用于共价键合法制备固定化酶。发现纳米载体可负载1/8(w/w)的葡萄糖苷酶,且回收率达70%。所得的固定化生物催化剂可用于乙酸乙酯-水双相体系中水解大豆异黄酮,其稳定性比游离酶有明显改善。但纳米颗粒易吸附于界面上,不利于反应结束后两相液滴的聚并及产物的分离。