Interleukin-28B polymorphisms on the SVR in the treatment of naïve chronic hepatitis C with pegylated interferon-α plus ribavirin: A meta-analysis

There are accurate but inconclusive data on the association between single nucleotide polymorphisms (SNPs) of interleukin (IL)-28B and sustained virological response (SVR) in chronic hepatitis C (CHC). This meta-analysis aimed to derive a more precise estimation of the effects of IL-28B SNPs locus (rs12979860 and rs8099917) on SVR in naïve CHC patients receiving pegylated interferon alpha (PEG-IFN-α) plus ribavirin. Literature search was conducted up to June, 2011, in PubMed, EMBASE and Cochrane Database of Systematic Reviews. A total of 36 studies involving 10912 cases with CHC receiving PEG-IFN-α plus ribavirin met the inclusion criteria. Analyses were stratified either by ethnicity or genotype of hepatitis C virus. In genotype 1/4 patients, rs12979860 CC was associated with high SVR in CHC patients (Caucasian: odds ratio (OR), 4.567; 95% confidence interval (CI), 3.826–5.452; Asian: OR, 4.033; 95%CI, 3.050–5.333; African American: OR, 4.297; 95%CI, 2.168–8.515; Hispanics: OR, 4.350; 95%CI, 2.817–6.717) but had no effect in genotype 2/3. In Caucasian (genotype 1/4: OR, 2.542; 95%CI, 2.108–3.065; genotype 2/3: OR, 1.363; 95%CI, 1.020–1.820) and Asian (genotype 1/4: OR, 5.214; 95%CI, 3.694–7.360; genotype 2/3: OR, 1.785; 95%CI, 1.095–2.910), rs8099917 TT was associated with high SVR in both genotype 1/4 and 2/3. Meta-regression showed that in Caucasians with CHC genotype 1/4, gender male might contribute to the effect of rs12979860 on SVR but advanced fibrosis might weaken this effect. Furthermore, in Asians with CHC genotype 1/4, high baseline viral load and advanced fibrosis might also undermine the effect of rs8099917 on SVR. This meta-analysis suggested that IL-28B rs12979860 CC and rs8099917 TT were associated with high SVR rate in CHC genotype 1/4. In CHC genotype 2/3, rs8099917 TT carriers also had higher SVR.     

Does cytochrome P450 1A1 MspI polymorphism increase acute lymphoblastic leukemia risk? Evidence from 2013 cases and 2903 controls

Previous studies indicated that cytochrome P450 1A1 (CYP1A1) MspI polymorphism might be a possible risk factor for several malignancies. Increasing investigations have been conducted on the association of CYP1A1 MspI polymorphisms with acute lymphoblastic leukemia (ALL). However, the results were controversial. The goal of the present study was to address this controversy by pooling and analyzing the published data. Therefore, quantitative meta-analyses evaluating the association of CYP1A1 MspI variation with ALL were performed and subgroup analyses on ethnicity, age groups and source of controls were further carried out. After a rigorous search in the Medline, EMBASE, OVID, ScienceDirect, and CNKI databases, all eligible studies for the period up to May 2012 were identified and screened according to the inclusion and exclusion criteria. Consequently, a total of fourteen case–control studies including 2013 cases and 2903 controls were selected for analysis. The overall data indicated a significant association of CYP1A1 MspI polymorphism with ALL risk (CC + TC vs TT: OR = 1.33; 95%CI = 1.05–1.69). In a subgroup analysis according to ethnicity, no associations were shown among Asians, Caucasians and Mixed ethnicity subgroups. In the subgroup analysis regarding age groups, increased risk was observed in the childhood ALL subgroup (C vs T: OR = 1.23; 95%CI = 1.04–1.45; CC + TC vs TT: OR = 1.31; 95%CI = 1.08–1.59). In the subgroup analysis stratified by source of controls, significant associations were observed in the population-based subgroup (CC + TC vs TT: OR = 1.33; 95%CI = 1.03–1.71). In conclusion, the results of the present study suggest that CYP1A1 MspI polymorphism might be a risk factor for ALL, particularly childhood ALL. Future well-designed high quality investigations with large sample sizes are required to elucidate the gene polymorphism–ALL relationship and gene–environment interactions.     

The impact of light intensity on shade-induced leaf senescence

Plants often have to cope with altered light conditions, which in leaves induce various physiological responses ranging from photosynthetic acclimation to leaf senescence. However, our knowledge of the regulatory pathways by which shade and darkness induce leaf senescence remains incomplete. To determine to what extent reduced light intensities regulate the induction of leaf senescence, we performed a functional comparison between Arabidopsis leaves subjected to a range of shading treatments. Individually covered leaves, which remained attached to the plant, were compared with respect to chlorophyll, protein, histology, expression of senescence-associated genes, capacity for photosynthesis and respiration, and light compensation point (LCP). Mild shading induced photosynthetic acclimation and resource partitioning, which, together with a decreased respiration, lowered the LCP. Leaf senescence was induced only under strong shade, coinciding with a negative carbon balance and independent of the red/far-red ratio. Interestingly, while senescence was significantly delayed at very low light compared with darkness, phytochrome A mutant plants showed enhanced chlorophyll degradation under all shading treatments except complete darkness. Taken together, our results suggest that the induction of leaf senescence during shading depends on the efficiency of carbon fixation, which in turn appears to be modulated via light receptors such as phytochrome A.     

Carbon trading for phosphorus gain: the balance between rhizosphere carboxylates and arbuscular mycorrhizal symbiosis in plant phosphorus acquisition

Two key plant adaptations for phosphorus (P) acquisition are carboxylate exudation into the rhizosphere and mycorrhizal symbioses. These target different soil P resources, presumably with different plant carbon costs. We examined the effect of inoculation with arbuscular mycorrhizal fungi (AMF) on amount of rhizosphere carboxylates and plant P uptake for 10 species of low‐P adapted Kennedia grown for 23 weeks in low‐P sand. Inoculation decreased carboxylates in some species (up to 50%), decreased plant dry weight (21%) and increased plant P content (23%). There was a positive logarithmic relationship between plant P content and the amount of rhizosphere citric acid for inoculated and uninoculated plants. Causality was indicated by experiments using sand where little citric acid was lost from the soil solution over 2 h and citric acid at low concentrations desorbed P into the soil solution. Senesced leaf P concentration was often low and P‐resorption efficiencies reached >90%. In conclusion, we propose that mycorrhizally mediated resource partitioning occurred because inoculation reduced rhizosphere carboxylates, but increased plant P uptake. Hence, presumably, the proportion of plant P acquired from strongly sorbed sources decreased with inoculation, while the proportion from labile inorganic P increased. Implications for plant fitness under field conditions now require investigation.     

Functionalization of cellulosic fibers by graft copolymerization of acrylonitrile and ethyl acrylate from their binary mixtures

Functionalization of Agave fibers was carried out by graft copolymerization of acrylonitrile (AN) and ethyl acrylate (EA) from their binary solutions in presence of Ce (IV) ions at a temperature of 45 ± 0.1 °C. An increase in the graft copolymerization was obtained with the increase in the feed molarity of the comonomers up to certain extent. Contrary to lesser affinity of acrylonitrile to grafting on Agave fibers, a synergistic effect of ethyl acrylate on acrylonitrile was observed when graft copolymers were prepared using different feed compositions (f_AN). The graft copolymers were characterized by various techniques such as FT-IR, TGA/DTA, X-RD and SEM analysis. Further swelling behavior of grafted fibers in different solvents, moisture absorption behavior and resistance to chemicals was investigated as a function of percent grafting to define their end uses in different environments.     

Are primary woody hosts ‘island refuges’ for host‐alternating aphids and important for colonization of local cereals?

Only few studies are available dealing with the relation between winter host density and spatial distribution and spring colonization of winter cereals by the host‐alternating cereal aphid species Rhopalosiphum padi and Metopolophium dirhodum. Large‐scale studies in climatically different agroecosystems in Germany from 2004 to 2006 revealed for R. padi and M. dirhodum larger spring/summer populations in landscapes with higher densities of winter hosts. A small‐scale study was performed in winter wheat fields adjacent to a large hedge with several typical winter hosts plants, bird cherry (Prunus padus) and wild rose species (Rosa spp.) to indentify distance effects (0–8, 8–24 and 24–60 m). Weekly measurements of aphid density between May to July showed significantly higher densities of R. padi compared with those of other aphids. Statistical analysis (Tukey–Kramer test and regression analyses) revealed significant gradients from the hedge to the field centre for R. padi and M. dirhodum. In comparative studies, winged R. padi from winter and adjacent summer hosts were genotyped using four microsatellite markers. The results showed that individuals from a certain winter host were not genetically similar with individuals from neighbouring summer hosts; it, therefore, seems that winter host clones did not significantly contribute to population built‐up in cereal fields over short distances. It could be concluded that on a regional scale, the density of sources for early migrants of R. padi is important for colonization intensity of surrounding summer hosts, but that the high local movement intensity and the relative small proportion of aphids that could be analysed in such tracking studies are blurring close spatial relations within short time periods.     

The dynamics of food chains under climate change and nutrient enrichment

Warming has profound effects on biological rates such as metabolism, growth, feeding and death of organisms, eventually affecting their ability to survive. Using a nonlinear bioenergetic population-dynamic model that accounts for temperature and body-mass dependencies of biological rates, we analysed the individual and interactive effects of increasing temperature and nutrient enrichment on the dynamics of a three-species food chain. At low temperatures, warming counteracts the destabilizing effects of enrichment by both bottom-up (via the carrying capacity) and top-down (via biological rates) mechanisms. Together with increasing consumer body masses, warming increases the system tolerance to fertilization. Simultaneously, warming increases the risk of starvation for large species in low-fertility systems. This effect can be counteracted by increased fertilization. In combination, therefore, two main drivers of global change and biodiversity loss can have positive and negative effects on food chain stability. Our model incorporates the most recent empirical data and may thus be used as the basis for more complex forecasting models incorporating food-web structure.     

Does famine influence sex ratio at birth? Evidence from the 1959–1961 Great Leap Forward Famine in China

The current study examined the long-term trend in sex ratio at birth between 1929 and 1982 using retrospective birth histories of 310 101 Chinese women collected in a large, nationally representative sample survey in 1982. The study identified an abrupt decline in sex ratio at birth between April 1960, over a year after the Great Leap Forward Famine began, and October 1963, approximately 2 years after the famine ended, followed by a compensatory rise between October 1963 and July 1965. These findings support the adaptive sex ratio adjustment hypothesis that mothers in good condition are more likely to give birth to sons, whereas mothers in poor condition are more likely to give birth to daughters. In addition, these findings help explain the lack of consistent evidence reported by earlier studies based on the 1944-1945 Dutch Hunger Winter or the 1942 Leningrad Siege.     

Spatial distribution patterns of three fig wasps on Ficus semicordata: How non-pollinators affect pollinator’s sex ratio

Sex ratio theory is one of the most productive fields in research on evolutionary biology. Pollinating fig wasps, due to their particular natural life history, are considered to be a valuable model for the study of sex ratio evolution. A great deal of research concerning the factors that affect pollinator fig wasp (Agaonidae) progeny sex ratio has been done, and at present three main factors (haplodiploidy, local mate competition and inbreeding) are found to be important at the population level. However, there still exists variation between empirical data and model predictions. Another factor to which little thought has been given before is the effect of non-pollinating fig wasps (NPFWs) which parasitize in the larvae gall of pollinator thus kill pollinators and exploit the fig/fig pollinator mutualistic systems. In this study, we focus on why and how non-pollinating fig wasps distort pollinator fig wasp’s original sex ratio. Through controlling the number of ovipositing foundresses inside a fig, combined with the observation of ovipositing behavior and sequence, we studied three species of wasp in the figs of a dioecious fig Ficus semicordata including the pollinator Ceratosolen gravely and NPFWs Platyneura cunia, Sycoscapter trifemmensis in tropical area of Xishuangbanna from September to December 2009. First, we observed the timing of oviposition of all fig wasps utilizing F. semicordata and found differences when compared to previous studies. Such as P. cunia is the fourth rather then the secondary fig wasps to oviposit on the syconia approximately 10 days after the pollinator. S. trifemmensis oviposits much earlier than previously thought, 14–32 days after the pollinators. We examined the spatial location of male and female progeny of the pollinator. We found foundresses of pollinator prefer to use innermost ovules first. Only at high offspring numbers were the outer ovules used. More male pollinator offspring were developed near the fig cavity, while female pollinator offspring were more evenly distributed among ovule layers. As pollinator offspring numbers increased, this phenomenon became more pronounced. This pattern of segregation of male larvae gall in inner ovules and female larvae gall in outer ovules suggests that female offspring might be more vulnerable to attack by parasitic wasps that oviposit from outside the syconium. Experiments later demonstrated that NPFWs are restricted by their ovipositor length and they prefer to or can only lay their eggs into ovules near the fig wall. Then we examined the spatial location of NPFWs and compared this with the spatial location of male/female progeny of pollinator. NPFWs had a high probability of parasitizing female pollinator larvae. Thus, NPFWs have a substantial effect on the sex ratio of the pollinator, as parasitism risk decreases towards the center of the syconium, where inner ovules provide enemy-free space for most of male pollinator offspring. Partial correlation analyse shows that sex ratio of pollinator progeny has a positive relationship with the number of NPFWs. We suggest that the resulting gradient in offspring viability between male and female contributes to selection on pollinators’ for a less femalebiased sex ratio. When the affect of NPFWs was excluded, the pollinator sex ratio was not in good agreement with local mate competition theory, although it was still female-biased. In addition, the average number of offspring per foundress decreased with increasing foundress number, but pollinator sex ratio was positively related to brood size. Thus, pollinator females do not appear to adjust their sex ratio to foundress density directly, but use brood size and foundress density simultaneously as cues to assess potential LMC.