“Protein aggregates” contain RNA and DNA,entrapped by misfolded proteins but largely rescued by slowing translational elongation

All neurodegenerative diseases feature aggregates, which usually contain disease‐specific diagnostic proteins; non‐protein constituents, however, have rarely been explored. Aggregates from SY5Y‐APP_Sw neuroblastoma, a cell model of familial Alzheimer''s disease, were crosslinked and sequences of linked peptides identified. We constructed a normalized “contactome” comprising 11 subnetworks, centered on 24 high‐connectivity hubs. Remarkably, all 24 are nucleic acid‐binding proteins. This led us to isolate and sequence RNA and DNA from Alzheimer''s and control aggregates. RNA fragments were mapped to the human genome by RNA‐seq and DNA by ChIP‐seq. Nearly all aggregate RNA sequences mapped to specific genes, whereas DNA fragments were predominantly intergenic. These nucleic acid mappings are all significantly nonrandom, making an artifactual origin extremely unlikely. RNA (mostly cytoplasmic) exceeded DNA (chiefly nuclear) by twofold to fivefold. RNA fragments recovered from AD tissue were ~1.5‐to 2.5‐fold more abundant than those recovered from control tissue, similar to the increase in protein. Aggregate abundances of specific RNA sequences were strikingly differential between cultured SY5Y‐APP_Sw glioblastoma cells expressing APOE3 vs. APOE4, consistent with APOE4 competition for E‐box/CLEAR motifs. We identified many G‐quadruplex and viral sequences within RNA and DNA of aggregates, suggesting that sequestration of viral genomes may have driven the evolution of disordered nucleic acid‐binding proteins. After RNA‐interference knockdown of the translational‐procession factor EEF2 to suppress translation in SY5Y‐APP_Sw cells, the RNA content of aggregates declined by >90%, while reducing protein content by only 30% and altering DNA content by ≤10%. This implies that cotranslational misfolding of nascent proteins may ensnare polysomes into aggregates, accounting for most of their RNA content.     

植物中 RNA 分子系统运输的研究进展

RNA 分子主要以单链的形式存在于生物体内,既担负着贮存及转移遗传信息的作用,又能作为核酶直接在细胞内发挥代谢功能 . 在植物中 RNA 也可作为活跃的信号分子调控基因表达和发育 . 介绍了包括病毒 RNA 、 RNA 沉默信号、特异内源 RNA 等 RNA 分子,在植物体内的系统运输及其在植物基因表达调控中所起作用的研究进展 .     

Intravascular granuloma induced by intravenous inoculation ofCryptococcus neoformans

In rodents an intravenous administration of viableCryptococcus (C.) neoformans cells frequently resulted in attachment of intravascular cryptococcal granulomas to inner walls of the large to medium-sized veins of various organs, including the lungs, liver and spleen. In order to elucidate the pathogenesis of granulomatous changes, the cells composing the intravascular granulomas were observed by electron microscopic peroxidase (PO) cytochemistry. The granuloma composing cells could be divided into the following four types according to the pattern of endogenous peroxidase activity: exudate macrophage (Mφ, type I), PO-negative Mφ (type II), resident Mφ (type III) and other inflammatory cells (type IV). In the intravenous granulomas of the lung, the percentages of composed cells were 39.0% for type I, 57.9% for type II, 0% for type III and 3.1% for type IV. By contrast, in the interstitial granulomas in the lung, type III Mφs, possibly derived from alveolar Mφs, played a significant role in granuloma formation. This may indicate that the intravascular granuloma is almost composed of macrophages derived from monocytes rather than alveolar macrophages. The expression of ICAM-1 on endothelia of the pulmonary veins was examined by immunoelectron microscopy. An immunogold labeling index was significantly augmented on the surface of endothelia in response to intravenous challenge ofC. neoformans. The intravascular granuloma demonstrates that the monocytes develop into the granuloma-composing macrophages and suppress the cryptococcal activities even hi the peripheral blood resulting in an assistance of endothelial functions.     

A selection strategy in plant transformation based on antisense oligodeoxynucleotide inhibition

Antisense oligodeoxynucleotide (asODN) inhibition was developed in the 1970s, and since then has been widely used in animal research. However, in plant biology, the method has had limited application because plant cell walls significantly block efficient uptake of asODN to plant cells. Recently, we have found that asODN uptake is enhanced in a sugar solution. The method has promise for many applications, such as a rapid alternative to time‐consuming transgenic studies, and high potential for studying gene functionality in intact plants and multiple plant species, with particular advantages in evaluating the roles of multiple gene family members. Generation of transgenic plants relies on the ability to select transformed cells. This screening process is based on co‐introduction of marker genes into the plant cell together with a gene of interest. Currently, the most common marker genes are those that confer antibiotic or herbicide resistance. The possibility that traits introduced by selectable marker genes in transgenic field crops may be transferred horizontally is of major public concern. Marker genes that increase use of antibiotics and herbicides may increase development of antibiotic‐resistant bacterial strains or contribute to weed resistance. Here, we describe a method for selection of transformed plant cells based on asODN inhibition. The method enables selective and high‐throughput screening for transformed cells without conferring new traits or functions to the transgenic plants. Due to their high binding specificity, asODNs may also find applications as plant‐specific DNA herbicides.     

Asymmetric Dimethylarginine,an Endogenous NOS Inhibitor,Is Actively Metabolized in Rat Erythrocytes

N ^G,N ^G-Dimethyl-L-arginine (asymmetric dimethylarginine: ADMA) is an endogenous competitive inhibitor of nitric oxide synthase (NOS). Plasma ADMA concentrations have been reported to increase in connection with diseases associated with an impaired endothelial L-arginine/NO pathway. In this study, we investigated the metabolism of ADMA in circulating blood cell populations to elucidate the regulatory mechanism of elevation of plasma ADMA, a novel risk factor for cardiovascular disease. We found by RT-PCR and Western blot analyses that protein arginine methyltransferase (PRMT)1 and dimethylarginine dimethylaminohydrolase (DDAH)-1, responsible for the biosynthesis and degradation of ADMA respectively, are expressed in erythrocytes (ECs), leukocytes, and platelets. We also identified a major ADMA-containing protein in ECs as catalase, confirmed by GST-pull down assay to bind to PRMT1 in vitro. This is the first report that the ADMA-metabolizing system, including the arginine methylation of proteins and the breakdown of free ADMA, occurs in circulating blood cell-populations, and that catalase in ECs might be a potential protein targeted by PRMT1.     

A Flexible Mouse-On-Mouse Immunohistochemical Staining Technique Adaptable to Biotin-Free Reagents,Immunofluorescence, and Multiple Antibody Staining

Immunohistochemistry on mouse tissue utilizing mouse monoclonal antibodies presents a challenge. Secondary antibodies directed against the mouse monoclonal primary antibody of interest will also detect endogenous mouse immunoglobulin in the tissue. This can lead to significant spurious staining. Therefore, a “mouse-on-mouse” staining strategy is needed to yield credible data. This paper presents a method that is easy to use and highly flexible to accommodate both an avidin-biotin detection system as well as a biotin-free polymer detection system. The mouse primary antibody is first combined with an Fab fragment of an anti-mouse antibody in a tube and allowed sufficient time to form an antibody complex. Any non-complexed secondary antibody is bound up with mouse serum. The mixture is then applied to the tissue. The flexibility of this method is confirmed with the use of different anti-mouse antibodies followed by a variety of detection reagents. These techniques can be used for immunohistochemistry (IHC), immunofluorescence (IF), as well as staining with multiple primary antibodies. This method has also been adapted to other models, such as using human antibodies on human tissue and using multiple rabbit antibodies in dual immunofluorescence.     

施用有机肥环境下盐胁迫小麦幼苗长势和内源激素的变化

在盆栽条件下,研究了不同浓度NaCl处理下,底施不同施用量有机肥小麦品种豫麦49-198幼苗的生长变化,在此基础上,选择出合适的NaCl处理浓度和有机肥施用量区间,并对此情况下小麦幼苗苗和根中内源激素含量和比例的变化进行了测定,以揭示其耐盐差异机制。结果表明,15000-35000 kg/hm²施用量有机肥处理明显减轻NaCl浓度为150 mmol/L的盐胁迫,其中25000 kg/hm²有机肥处理效果最明显;45000 kg/hm²以上的有机肥处理对幼苗生长抑制无明显缓解作用;当NaCl浓度为450 mmol/L时,各种施用量的有机肥处理均不能减轻盐胁迫对幼苗生长的抑制。150 mmol/L NaCl胁迫下,不同施用量有机肥处理,分别为对照(不施肥)、低施用量(15000 kg/hm²)、中施用量(25000 kg/hm²)和高施用量(35000 kg/hm²)的有机肥,土壤盐度的增加量随有机肥用量增加而上升,对小麦幼苗生长的抑制作用得到缓解,以25000 kg/hm²有机肥处理缓解作用最强。有机肥处理下盐胁迫小麦幼苗苗和根中ABA含量的增加得到显著缓解,IAA和GAs的含量比不施有机肥的对照有不同程度的提高, 说明盐胁迫下有机肥处理小麦幼苗具有较高IAA和GAs合成量。盐胁迫下有机肥处理使苗中ZR的含量较高而根中则较低,说明抗盐性较强的有机肥处理可迅速将根部合成的ZR向苗中转移,促进苗的生长。盐胁迫下有机肥处理的IAA/ABA、GAs/ABA、ZR/ABA的比值也有不同程度提高。在盐胁迫下,有机肥处理尤其是在25000 kg/hm²施用量时,小麦幼苗协调自身激素平衡的能力较强可能是其生长受抑制较小的重要原因。     

增强UV-B辐射对高山植物歪头菜生长及内源激素变化的影响

以青藏高原野生豆科牧草歪头菜(Vicia unijuga A.Br.)为材料,模拟甘南夏季晴朗无云天空平流层臭氧衰减9%的UV-B辐射强度(6.4 kJ/m²),分析增强UV-B辐射条件下植株内源激素水平和全氮含量随时间变化及其与生长特性的关系。结果显示:(1)来自高寒地区野生歪头菜在增强UV-B辐射的最初阶段(10 d左右)会产生对紫外胁迫的应激性响应,其内源生长激素吲哚乙酸(IAA)、玉米素(ZT)、赤霉素类(GAs)和6-苄氨基嘌呤(6-BA)含量水平以及全氮含量均明显高于对照,生长指标也相应升高。(2)随着处理时间延长,歪头菜内源生长激素含量开始迅速降低,并于处理后30 d时降至最低,处理后40 d时全氮含量也显著低于对照;同时,随着生长激素和全氮含量降低,植株生长也受到强烈抑制。(3)在处理后40 d时歪头菜内源ABA才被检测到,说明细胞膜伤害发生的时间相对较晚。研究表明,来自高寒环境的植物种歪头菜经历长期自然选择和适应,形成了对强UV-B辐射的应激响应机制,使辐射伤害延迟,内源激素含量变化与该应激响应有密切关系。     

Fluctuation of free IAA under inductive and non-inductive photoperiods in Chenopodium rubrum

Fluctuation in levels of endogenous free IAA has been followed in the SD plant Chenopodium rubrum under photoperiodic conditions inductive or not inductive of flowering. Endogenous IAA was measured fluorimetrically as -pyrone. The level of IAA shows little fluctuation under continuous illumination. An endogenous rhythm of IAA fluctuation was found in plants transferred from light to continuous darkness, with a natural period of 30 hrs. The troughs of minimum IAA level within the endogenous rhythm coincided with the peaks in the endogenous rhythm of flowering response, which possessed the same period length. The concentration of IAA in the shoot always decreased at the end of cycles of dark period that induce flowering. The results are discussed in relation to the role of IAA in flowering of SD plants.