生物种群动态微分方程模型参数估计方法

本文以数值分析和最优化技术的有机结合为基础,提出了一种新的对动态微分方程模型直接进行数据拟合和参数估计方法,并以Logistic微分方程、生物种间竞争关系微分方程以及一种复合形态的Logistic微分方程为例进行了数据拟合试验．结果表明,该方法对各种动态微分方程模型均能进行最优拟合分析并求解其参数．同时发现,以前有的作者〔1,2,3,4,5〕提出的方法所得到的参数估计值存在系统误差且误差较大．     

鼠抗人纤维蛋白抗体单链Fv片断的三维结构模建

用Biosym公司开发的计算机辅助分子设计系统模建了鼠抗人纤维蛋白抗体Fv片断的三维结构。Fv是由重链可变区(Vh)和轻链可变区(Vl)两个结构域组成的具有抗原结合能力的最小抗体片断。先分别模建了Vh和Vl两个结构域,然后搭建出Fv片断的整体三维结构,并对模建的结构进行了分子力学和动力学优化。对结构的合理性验证显示模建结构是合理的。本研究为鼠抗人纤维蛋白抗体Fv片断的人源化的分子设计打下了基础。     

Dynamic properties of the advertisement calls of gray tree frogs: patterns of variability and female choice

We assessed the potential for several acoustic properties ofthe advertisement calls of male gray tree frogs to affect relativemating success by relating patterns of variation in these propertiesto minimum differences required to elicit female choice. Dynamicproperties (pulse number, PN; call rate, CR; and duty cycle,DC, the ratio of call duration to call period) varied much morewithin bouts of calling than a static property (dominant frequency,DF) but nevertheless exhibited significant between male variationin three of four breeding seasons. Many multiply recorded malesconsistently produced calls with values substantially aboveor below mean values of males recorded on the same nights. Nightlyranges of variation in PN and CR were often greater than theminimum differences required to elicit female preferences inthe laboratory. In most experiments, females chose high-PN orfast-CR calls over low-PN or slow-CR alternatives, respectively,even if the preferred stimuli were farther away or 6-10 dB lowerin sound pressure level (SPL), provided that differences inPN or CR were 100%. Consistent with these results, females didnot always choose the closer of two calling males in the field.Nightly ranges of variation in DF rarely equaled the minimumdifference required to elicit SPL independent preferences. Femalespreferred a stimulus of high-PN and slow-CR over an alternativeof low-PN or fast-CR with the same acoustic on-time; in twoexperiments, females chose calls of high-PN over low-PN alternativeseven though the playback of the high-PN call was interruptedand the low-PN call was broadcast continuously. Thus, femalepreferences were not merely based on the total time of acousticstimulation. Responses of females tested twice in the same experimentsuggest that phenotypic variation in preference was limitedin our study populations.     

毛乌素沙地草地种植管理咨询系统的开发

 本研究初步开发了一个用于毛乌素沙地草地种植管理咨询的专家系统ASSG。这个系统将当地生态系统管理专家们的经验知识和对土壤水分动态的理论研究成果结合起来以产生对于土地利用和种植的作物种类及品种的最优管理策略和最适的植被覆盖率。本系统利用3个层次的推理过程和结构化的知识库,通过咨询过程—步步地引导用户得到最优种植管理策略。在每—层次的推理中,本系统提供给用户多重选择,根据用户的意愿进行下一步的推理。这一推理的交互作用机制为用户获得适宜的咨询结果提供了最大的便利性。本系统的主体部分山Turbo Prolog语言完成,该语言是一种用于开发专家系统的描述性语言。基于土壤水分平衡原理的最优植被覆盖率模型由C语言实现,并应用多语言编程技术将之嵌入程序主体中。系统的样本运行结果表明本系统运行便利,并能产生合理的种植管理策略。     

The role of nitrogen in a simple scheme to scale up photosynthesis from leaf to canopy

A simple analytical scheme, involving the distribution of nitrogen, to scale up photosynthesis from leaf to canopy is proposed. The scheme is based on the assumption that there are two pools of nitrogen in leaves: nitrogen in photosynthetic, degradable structures (N_p) and nitrogen in non-photosynthetic and non-degradable structures (N_s). The rate of photon-saturated photosynthesis, F_m, is assumed to be proportional to N_p and is distributed inside the canopy similarly to photon flux density (PFD). Prior assumptions of an optimum distribution of nitrogen are not a prerequisite. Calculations made with the scheme lead to development of the hypothesis that the canopy can be treated as a ‘big leaf’ on the time scales involved in acclimation of photosynthesis to PFD. Simulations using parameters for tree species with different requirements for PFD show that shade-tolerant species may have denser canopies than sun-demanding species because of smaller amounts of non-photosynthetic structural nitrogen and/or supporting tissue in their leaves.     

Prediction of B-cell epitopes forSalmonella typhi OmpC

The possible B-cell epitopes of the outer membrane porin OmpC ofSalmonella typhi have been identified, using the primary structure of the protein, by means of multiple sequence alignment and the known molecular structure of two other porins. From the analysis, 8 regions were identified as immunodominant and these were ranked based on antigenic index and the ratio of the number of nonconserved residues to the fragment length. Model building of the top two ranked regions show the tendency to form loop structures supporting the possibility of these being candidate epitopes.     

Simulation and dynamic optimisation of animal cell culture

In animal cell culture, there are some 25 substrates that both have a significant effect on the culture performance and which can be measured with relative ease. A detailed dynamic simulation for such a culture has been produced and an optimisation policy that use this model to identify ideal media conditions has been developed. This paper describes an extension of that work to include the dynamic optimisation of cultures under fed-batch operation. Two different types of feeding policy were considered – in the first, discrete shots of feed were supplied, while in the second, feed was added continuously. Both policies offered significant improvements in the predicted productivity of the culture - up to 30% that of an experimentally optimisedbatch culture.     

Derivation and testing of pair potentials for protein folding. When is the quasichemical approximation correct?

Many existing derivations of knowledge-based statistical pair potentials invoke the quasichemical approximation to estimate the expected side-chain contact frequency if there were no amino acid pair-specific interactions. At first glance, the quasichemical approximation that treats the residues in a protein as being disconnected and expresses the side-chain contact probability as being proportional to the product of the mole fractions of the pair of residues would appear to be rather severe. To investigate the validity of this approximation, we introduce two new reference states in which no specific pair interactions between amino acids are allowed, but in which the connectivity of the protein chain is retained. The first estimates the expected number of side-chain contracts by treating the protein as a Gaussian random coil polymer. The second, more realistic reference state includes the effects of chain connectivity, secondary structure, and chain compactness by estimating the expected side-chain contrast probability by placing the sequence of interest in each member of a library of structures of comparable compactness to the native conformation. The side-chain contact maps are not allowed to readjust to the sequence of interest, i.e., the side chains cannot repack. This situation would hold rigorously if all amino acids were the same size. Both reference states effectively permit the factorization of the side-chain contact probability into sequence-dependent and structure-dependent terms. Then, because the sequence distribution of amino acids in proteins is random, the quasichemical approximation to each of these reference states is shown to be excellent. Thus, the range of validity of the quasichemical approximation is determined by the magnitude of the side-chain repacking term, which is, at present, unknown. Finally, the performance of these two sets of pair interaction potentials as well as side-chain contact fraction-based interaction scales is assessed by inverse folding tests both without and with allowing for gaps.     

Mangrove zooplankton of North Queensland,Australia

Food consumption, growth, fish length distributions,population sizes and habitat use of the salmonids intwo lakes in the Høylandet area were studied in1986–89. The allopatric brown trout (Salmotrutta L.) in the tarn Røyrtjønna (27 ha) fed mainlyon organisms at the lake surface , crustaceanplankton, Trichoptera and Chironomidae. Only 5% ofthe trout reached an age of 6 years and a length of25 cm. Sexual maturation started at age 3 and a lengthof 14 cm. Through mark – recapture technique thenumber of trout >10 cm was estimated to 115 ha^-1.Growth, fish length frequencies and sexualmaturation of the sympatric brown trout and Arcticcharr (Salvelinus alpinus (L.)) in LakeStorgrønningen (530 ha) were not much different. TheStorgrønningen charr fed chiefly on zooplankton whichby volume represented 33% for the trout. The foodconsumption of Storgrønningen trout was at maximum inJuly with 2.06 mg food (d.w.) per g live fish and forcharr in September with 1.26 mg food. The maximumsize-independent growth rate of trout was 5.2%day^-1 in late June, and for charr 4.1%day^-1 in late July. Seventy percent of theirseasonal growth took place before 15 August. The charrstayed mainly deeper than 3-4 m, at water temperatures<15 °C. Brown trout stayed mainly the littoralzone and in near surface water of the pelagic. Thenumber of pelagic charr was estimated hydroacusticallyto 50 ind. ha^-1. The charr spawn in thelake. Mean numbers of juvenile trout in the twolargest tributaries were 26 and 48 per 100 m².Their annual length increment was 2.8–3.4 cm. Noindication of acidification or other human inducedimpacts were found. The lakes and their tributariesrepresent complex aquatic systems, representative forpristine oligotrophic Norwegian lowland lakes.John W. Jensen died shortly after easter in 1996     

Statistical analysis of algal and water quality data

Data on cyanobacteria (blue-green algae) are generallycollected on a reactive basis, frequently in responseto bloom events. Such data presents a biased andincomplete snapshot of water quality. This paper looksat two typical data sets for UK waters showing thatwhile statistics may be used to describe the data theyare of limited use in forecasting. Suggestions ofappropriate tests for small and sparse data sets aremade.