Global change belowground: impacts of elevated CO2, nitrogen,and summer drought on soil food webs and biodiversity

The world's ecosystems are subjected to various anthropogenic global change agents, such as enrichment of atmospheric CO₂ concentrations, nitrogen (N) deposition, and changes in precipitation regimes. Despite the increasing appreciation that the consequences of impending global change can be better understood if varying agents are studied in concert, there is a paucity of multi‐factor long‐term studies, particularly on belowground processes. Herein, we address this gap by examining the responses of soil food webs and biodiversity to enrichment of CO₂, elevated N, and summer drought in a long‐term grassland study at Cedar Creek, Minnesota, USA (BioCON experiment). We use structural equation modeling (SEM), various abiotic and biotic explanatory variables, and data on soil microorganisms, protozoa, nematodes, and soil microarthropods to identify the impacts of multiple global change effects on drivers belowground. We found that long‐term (13‐year) changes in CO₂ and N availability resulted in modest alterations of soil biotic food webs and biodiversity via several mechanisms, encompassing soil water availability, plant productivity, and – most importantly – changes in rhizodeposition. Four years of manipulation of summer drought exerted surprisingly minor effects, only detrimentally affecting belowground herbivores and ciliate protists at elevated N. Elevated CO₂ increased microbial biomass and the density of ciliates, microarthropod detritivores, and gamasid mites, most likely by fueling soil food webs with labile C. Moreover, beneficial bottom‐up effects of elevated CO₂ compensated for detrimental elevated N effects on soil microarthropod taxa richness. In contrast, nematode taxa richness was lowest at elevated CO₂ and elevated N. Thus, enrichment of atmospheric CO₂ concentrations and N deposition may result in taxonomically and functionally altered, potentially simplified, soil communities. Detrimental effects of N deposition on soil biodiversity underscore recent reports on plant community simplification. This is of particular concern, as soils house a considerable fraction of global biodiversity and ecosystem functions.     

Distribution of Microorganisms in the Al–Fe–Humus Podzols of Natural and Anthropogenically Impacted Boreal Spruce Forests

Natural and anthropogenically induced seasonal variations in the abundance and biomass of various groups of microorganisms in the Al–Fe–humus podzols of boreal spruce forests were analyzed. The fungal biomass in these soils was found to be considerably higher than the bacterial biomass. The microbial population was mainly concentrated in a thin surface layer (10–15 cm in thickness), which included the forest litter and the upper mineral root-inhabited soil horizon and greatly differed from other soil horizons in morphology and other properties. This layer was found to be optimal with respect to hydrothermal and nutritional conditions and is characterized by profound seasonal variations in the abundance and biomass of microbiota. The high acidity, typical of the Al–Fe–humus podzols, resulted from the metabolism of their microbial communities. In the polluted podzols, the population of prokaryotes increased and that of eukaryotes decreased.     

原核微生物的多样性

微生物是一群以分解代谢为主的重要生物类群,其生物学多样性十分丰富。但由于它们的微观性,尤其原核微生物简单的单细胞结构、以无性方式进行快速地繁殖而造成的无准确的基线难以对其进行种群数目和数量的统计,因而对微生物的多样性研究远没有宏观生物那样深入和受到重视。本文根据原核微生物的特性,从其物种、所代表的进化分支、生理代谢类群及遗传背景几个方面简述了它们的多样性及重要意义,意在引起科学界和全社会对这类生物资源的认识和保护的重视。     

遗传工程微生物细胞间发生的自然遗传转化

将两株具有不同遗传标记的枯草芽孢杆菌在基本培养基中分别培养至对数生长后期后进行短时间混合静置培养 ,经选择平板筛选、DNaseI敏感性试验、质粒检测和产蛋白酶活性检测 ,发现两菌株之间可通过自然遗传转化进行染色体DNA和质粒DNA的交换。研究结果表明 ,自然遗传转化可在细胞间进行 ,这对揭示微生物群居的自然环境中可能存在的细胞间的DNA转移 ,以及正确评估遗传工程微生物(GEMs)的安全使用具有重要意义。     

改变碳输入对沂蒙山区典型次生林土壤微生物碳源代谢功能的影响

凋落物和根系向土壤的碳输入是森林生态系统的关键过程,输入量及组分的变化直接影响森林土壤碳汇功能和生产力。在沂蒙山区栎类天然次生林中,开展添加/去除凋落物及去除根系的定位控制试验。于控制试验开展21个月后,采用Biolog Eco微平板培养法,研究凋落物和根系对土壤微生物碳源代谢功能的影响。结果表明,凋落物倍增处理增加了土壤微生物碳源代谢功能,增加了对糖类和胺类的代谢能力。去除凋落物处理、去除根系处理和无输入处理都降低了土壤微生物碳源代谢功能。去除凋落物处理降低土壤微生物碳源代谢功能的幅度大于去除根系处理,表明当前条件下凋落物对土壤微生物碳源代谢功能的影响大于根系,但如果抛除掉去除根系处理中残留根系的影响,凋落物和根系对土壤微生物碳源代谢功能的相对大小可能会发生变化。土壤有机碳含量、铵态氮含量显著影响微生物碳源代谢多样性（P<0.05）,并与碳源代谢功能正相关。凋落物倍增处理通过增加土壤铵态氮和有机碳含量,增加微生物碳源代谢功能,去除凋落物处理和无输入处理通过降低土壤铵态氮和有机碳含量,降低微生物碳源代谢功能。结果深化了碳输入途径（地上凋落物与地下根系）和数量（凋落物倍增、凋落物去除与对照）对温带栎类天然次生林土壤碳代谢过程的认识。     

Prokaryotic diversity in Tuz Lake, a hypersaline environment in Inland Turkey

Tuz Lake is an inland thalassohaline water body located in central Anatolia that contributes to 60% of the total salt production in Turkey per year. The microbiota inhabiting this lake has been studied by FISH, denaturing gradient gel electrophoresis of PCR-amplified fragments of 16S rRNA genes, and 16S rRNA gene clone library analysis. Total cell counts per milliliter (1.38 × 10⁷) were in the range of the values normally found for hypersaline environments. The proportion of Bacteria to Archaea in the community detectable by FISH was one to three. 16S rRNA gene clone libraries indicated that the archaeal assemblage was dominated by members of the Square Haloarchaea of the Walsby group, although some other groups were also found. Bacteria were dominated by members of the Bacteroidetes , including Salinibacter ruber -related phylotypes. Because members of Bacteroidetes are widely present in different hypersaline environments, a phylogenetic analysis of 16S rRNA gene sequences from Bacteroidetes retrieved from these environments was carried out in order to ascertain whether they formed a unique cluster. Sequences retrieved from Tuz Lake and a group of sequences from other hypersaline environments clustered together in a branch that could be considered as the 'halophilic branch' within the Bacteroidetes phylum.     

Opportunities for renewable bioenergy using microorganisms

Global warming can be slowed, and perhaps reversed, only when society replaces fossil fuels with renewable, carbon-neutral alternatives. The best option is bioenergy: the sun's energy is captured in biomass and converted to energy forms useful to modern society. To make a dent in global warming, bioenergy must be generated at a very high rate, since the world today uses approximately 10 TW of fossil-fuel energy. And, it must do so without inflicting serious damage on the environment or disrupting our food supply. While most bioenergy options fail on both counts, several microorganism-based options have the potential to produce large amounts of renewable energy without disruptions. In one approach, microbial communities convert the energy value of various biomass residuals to socially useful energy. Biomass residuals come from agricultural, animal, and a variety of industrial operations, as well as from human wastes. Microorganisms can convert almost all of the energy in these wastes to methane, hydrogen, and electricity. In a second approach, photosynthetic microorganisms convert sunlight into biodiesel. Certain algae (eukaryotes) or cyanobacteria (prokaryotes) have high lipid contents. Under proper conditions, these photosynthetic microorganisms can produce lipids for biodiesel with yields per unit area 100 times or more than possible with any plant system. In addition, the non-lipid biomass can be converted to methane, hydrogen, or electricity. Photosynthetic microorganisms do not require arable land, an advantage because our arable land must be used to produce food. Algae or cyanobacteria may be the best option to produce bioenergy at rates high enough to replace a substantial fraction of our society's use of fossil fuels.     

水淹生境下秋华柳对Cd污染土壤微生物数量及酶活性的影响

三峡库区消落带面临水淹及Cd污染双重胁迫,为探究秋华柳(Salix variegata Franch.)在水淹条件下对Cd污染土壤的修复能力,以秋华柳扦插苗为试验材料,设置正常供水(CK)和水淹组(FL)两个水分处理方式,4个Cd浓度梯度:对照组(0mg/kg)、低浓度(0.5mg/kg)、中浓度(2mg/kg)及高浓度(10mg/kg),分别对处理60 d和120 d的土壤微生物数量及酶活性变化特征进行研究。试验结果表明:(1)Cd浓度处理均未显著影响土壤微生物数量(P0.05),水淹显著降低处理60 d土壤细菌数、真菌数及处理120 d的土壤放线菌数及真菌数(P0.05)。(2)种植秋华柳显著提高处理60 d土壤细菌数量(P0.05),对土壤放线菌、真菌数量也有一定提升。(3)Cd浓度处理显著影响处理60 d土壤磷酸酶活性及处理120 d脲酶活性(P0.05),水淹显著降低处理60 d土壤磷酸酶活性及处理120 d脲酶、蔗糖酶和磷酸酶活性(P0.05)。(4)正常供水及水淹条件下,种植秋华柳对土壤酶活均有一定改善作用。种植秋华柳显著提高了处理60 d土壤磷酸酶活性以及处理120 d脲酶和蔗糖酶活性(P0.05)。研究结果表明:水淹生境中,秋华柳对Cd污染土壤微生物数量及酶活性具有改善作用,在Cd污染土壤修复方面有一定应用前景。     

Conceptualizing "suicidal genetically engineered microorganisms" for bioremediation applications

Use of genetically modified microorganisms (GEMs) for pollution abatement has been limited because of risks associated with their release in the environment. Recent developments in the area of recombinant DNA technologies have paved the way for conceptualizing "suicidal genetically engineered microorganisms" (S-GEMS) to minimize such anticipated hazards and to achieve efficient and safer bioremediation of contaminated sites. Our strategy of designing a novel S-GEM is based on the knowledge of killer-anti-killer gene(s) that would be susceptible to programmed cell death after detoxification of any given contaminated site(s).