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41.
The structure of human erythrocytic carbonic anhydrase II has been refined by constrained and restrained structure–factor least-squares refinement at 2.0 Å resolution. The conventional crystallographic R value is 17.3%. Of 167 solvent molecules associated with the protein, four are buried and stabilize secondary structure elements. The zinc ion is ligated to three histidyl residues and one water molecule in a nearly tetrahedral geometry. In addition to the zinc-bound water, seven more water molecules are identified in the active site. Assuming that Glu-106 is deprotonated at pH 8.5, some of the hydrogen bond donor–acceptor relations in the active site can be assigned and are described here in detail. The Oγ1 atom of Thr-199 donates its proton to the Oε1 atom of Glu-106 and can function as a hydrogen bond acceptor only in additional hydrogen bonds. 相似文献
42.
Morphological dispersion of introduced Hawaiian finches: evidence for competition and a Narcissus effect 总被引:2,自引:0,他引:2
Summary Morphological analyses were conducted on finch species introduced to Oahu, Hawaii. As many as 25 species of finches representing four families (Emberizidae, Fringillidae, Ploecidae, Estrildidae) have been introduced to Oahu. Of these, 15 species currently have established wild populations. When compared with pools of 25 and 23 species introduced to Oahu, the 15 surviving species are morphologically overdispersed. This result is consistent with the hypothesis that competition has influenced the outcome of these introductions. We also tested the hypothesis that surviving introduced finches in one habitat (sugarcane fields) were morphologically overdispersed. When the seven surviving finch species found in sugarcane were compared with the pools of 25 and 23 species, they too were morphologically overdispersed. However, when the seven sugarcane species were compared with a species pool consisting of only the surviving 15 species found across Oahu, they were not morphologically overdispersed. This result suggests that morphological analyses of community structure based only on comparisons of assemblages of surviving species may be biased by a Narcissus effect. 相似文献
43.
Vyacheslav L. L'vov Irina K. Verner Larisa Yu. Musina Alexander V. Rodionov Anatoly V. Ignatenko Alexander S. Shashkov 《Archives of microbiology》1992,157(2):131-134
On the basis of chemical and NMR data the partial structure of lipid A from lipooligosaccharide (LOS) of Neisseria meningitidis group B, strain BC5S No 125 was established. Lipid A consisted of disaccharide 2-deoxy-6-O-[2-deoxy-2-(3-hydroxytetradecanoylamino)--gluco-pyranosyl]-2-(3-hydroxytetradecanoylamino)--glucopyranose carrying the -(2-aminoethyl)pyrophosphate residue at 0–4 and the pyrophosphate or phosphate residue at 0–1. On hydrolysis of the acidic form of LOS with 1% acetic acid the substituent at 0–1 was practically completely removed whereas that at 0–4 was stable. The analogous hydrolysis of the Mg-salt of LOS was accompanied by splitting off the pyrophosphate linkage in the substituent at 0–4. Hydrolysis of LOS at pH 4.5 in the presence of SDS led mainly to a lipid A preparation retaining both pyrophosphate residues.Abbreviations KDO
2-keto-3-deoxyoctulosonic acid
- LA-I, LA-II
preparations of lipid A
- LOS
lipooligosaccharide
- LOS-H+
the acidic form of LOS
- OS
oligosaccharide
- TLC
thin-layer chromatography
- GLC-MS
gas-liquid chromatography/mass spectrometry 相似文献
44.
A directed conformational search algorithm using the program CONGEN (ref. 3), which samples backbone conformers, is described. The search technique uses information from the partially built structures to direct the search process and is tested on the problem of generating a full set of backbone Cartesian coordinates given only alpha-carbon coordinates. The method has been tested on six proteins of known structure, varying in size and classification, and was able to generate the original backbone coordinates with RMSs ranging from 0.30-0.87A for the alpha-carbons and 0.5-0.99A RMSs for the backbone atoms. Cis peptide linkages were also correctly identified. The procedure was also applied to two proteins available with only alpha-carbon coordinates in the Brookhaven Protein Data Bank; thioredoxin (SRX) and triacylglycerol acylhydrolase (TGL). All-atom models are proposed for the backbone of both these proteins. In addition, the technique was applied to randomized coordinates of flavodoxin to assess the effects of irregularities in the data on the final RMS. This study represents the first time a deterministic conformational search was used on such a large scale. 相似文献
45.
Three Dutch Calthion palustris communities, situated in different phytogeographic districts which vary in elimatic conditions, are compared with respect to vegetation structure and microclimate. The three Calthion stands which are similar in soil, management and hydrology, differ slightly in total aboveground biomass in the period just before cutting, but there is a larger difference in the biomass contributed by phanerogams, bryophytes and litter. The structure of the Calthion communities varies in vertical distribution of biomass and leaf area (LAI), and growth form and leaf size composition. These differences are interpreted in terms of elimatic differences such as length of growing season, temperature and wind. Profiles of decreasing light intensity within the vegetation canopy are related to the vertical distribution of biomass, LAI and leaf inclination of the various Calthion communities. Temperature and saturation deficit of the air on the different sites show profiles of a similar shape which suggests that in such ecologically comparable plant communities, vegetation structure differs under influence of the macroclimate in such a way that the resulting vegetation canopies modify the microclimate within the vegetation to become homologous.Nomenclature of species follows Heukels-van Ooststroom (1977).
Acknowledgement. This study is part of the pfoject on vegetation structure, financially supported by the Foundation for Fundamental Biological Research (BION), of the Dutch Organization for the Advancement of Pure Research (ZWO). Much of the research was carried out at the Division of Geobotany, University of Nijmegen. The authors kindly acknowledge this hospitality. Also the data contributed by B. Aerssens, J. Cortenraad, and S. Troelstra and the typing help of Mrs R. Jaegermann are gratefully acknowledged. 相似文献
46.
Summary DNA sequencing has revealed an internal, tandemly repetitive structure in the family of giant polypeptides encoded by three types of Balbiani ring (BR) genes, in three different species ofChironomus. Each major BR repeat can be subdivided into two halves: a region consisting of short subrepeats and a more constant region that lacks obvious subrepeats. Comparative predictions of secondary structure indicate that an -helical segment is consistently present in the amino-terminal half of the constant region in all known BR proteins. Comparative predictions, coupled with consideration of the known phosphorylation of serine and threonine residues in BR proteins, suggest that the -helical structure may also extend into the carboxy-terminal half of the constant region, possibly interrupted by -turn(s). However, it is also possible that the structure is variable, and that a -strand is present in that half in some cases. All of the constant regions conserve one methionine and one phenylalanine residue, as well as all four cysteines; these residues presumably play roles in the packing or cross-linking of aligned constant regions. The structure of the subrepeat region is not clear, but the prevalence of a tripeptide pattern (basic-proline-acidic) suggests some type of structural regularity, possibly an extended helix. The possible significance of these conserved molecular features is discussed in the context of how they may serve the elasticity, insolubility, and hydrophilicity of the fibrils and threads formed by the BR polypeptides. 相似文献
47.
The nature of the stable noncovalent dimers of band 3 protein from erythrocyte membranes in solutions of Triton X-100 总被引:2,自引:0,他引:2
Stable noncovalent dimers of band 3 protein from human erythrocyte membranes, in which state the protein is thought to exist after solubilization by the nonionic detergent Triton X-100, do not occur when purified batches of the detergent are used. Instead, the protein is in a monomer/dimer/tetramer association equilibrium. The stable dimers do appear, however, when the detergent has been 'aged'. They thus seem to be artifacts. 相似文献
48.
To obtain a satisfactory agreement between computed transition temperatures and those determined experimentally, we introduce explicitly water molecules which hydrate the polar headgroup of dipalmitoylphosphatidylethanolamine molecules. The calculated free energy curves as a function of the intermolecular interchain distance and the degree of hydration of the polar groups permit the determination of the transition of the phospholipid system from the gel to the liquid crystalline phase. The detailed structure of the hydration shell is defined using the supermolecular approach. 相似文献
49.
Principal component analysis of compositional data 总被引:7,自引:0,他引:7
50.
Y.M. Bhatnagar R.D. Faulkner 《Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression》1983,739(1):132-136
Electrophoretic analysis of the nucleosomal histones from MN1 and MN2 subpopulations of the seminiferous tubules in gels containing either 6.25 or 2.5 M urea revealed the presence of testis specific histone H2S, H1 and protein ‘A’ in addition to the somatic histones in the core protein complex. Size analysis indicated the presence of a 150–160 bp DNA segment in the MNI subpopulation, whereas, an approx 180 bp DNA fragment was present in the MN2 subpopulation of both liver and tubule nucleosomes. These data suggest an extensive remodeling of the nucleosomal core protein complex during mammalian spermatogenesis. 相似文献