Incorporating biophysical ecology into high‐resolution restoration targets: insect pollinator habitat suitability models

Species distribution models can be informative of the biodiversity impacts of changing environments at global, national, and regional scales, but are often constrained in their resolution to extents not relevant to individual, intensive ecological management programs. We constructed a high‐resolution topoclimatic model of spring and summer temperatures across a 152 km² restoration area on the Swan Coastal Plain, Western Australia, and used it to project energetic expenditure and habitat suitability estimates for four major hymenopteran pollinators. For all species, the most heavily modified landscapes were the least suitable, but only for one species, Zapsilothynnus nigripes, was there evidence that the upper thermal tolerance threshold was exceeded broadly. However, at the higher environmental temperatures that we modeled, some species would need to forage up to 10 times their own body mass every hour to meet their energetic requirements. It seems unlikely that the nutritional requirements of most insect pollinators operating at these higher metabolic rates could be met in an impoverished restoration ecosystem, although resource availability remains to be quantified in these habitats. Hence, to increase the likelihood of restoration success by restoring insect pollination networks, nutritional resources may need to be increased during restoration. Accounting for the way that thermoenergetic requirements shape ecological interactions better positions management trajectories aimed at restoring and maintaining key insect pollinators in “novel” ecosystems.     

Seasonal and spatial variations of heavy metals in surface sediments collected from the Baoxiang River in the Dianchi Watershed,China

To explore potential ecological hazards due to heavy metals in the Dianchi Lake Watershed, a three-stage European Community Bureau of Reference (BCR) sequential extraction procedure was applied to examine the spatial distributions and relative speciation ratios of Zn, Cu, Ni, Pb, and Cr in Baoxiang River sediments during wet and dry seasons. The metal species have similar spatial variations during different seasons. In the upstream reaches of the Baoxiang River, heavy metals reside primarily in the non-extractable residual fraction (72–90%). In the midstream, the residual fraction (35–89%) remains dominant, but the extractable fraction increases, featuring especially notable increases in the reducible fraction (5–40%). Downstream, the Cu, Ni, Pb, and Cr residual fractions remain high (46–80%) and the extractable fractions increase rapidly; the Zn extractable fraction is quite high (65.5%). Anthropogenic sources drive changes in heavy metal speciation. Changes in the river environment, such as pH and oxidation-reduction potential, also affect speciation. The reducible fraction of heavy metals in Baoxiang River sediments is most sensitive to pH. Potential ecological risk assessments for these five elements indicate that risks from Zn and Pb are mild to moderate in the middle and lower reaches of the river.     

Pollution and ecological risk assessment of antimony and other heavy metals in soils from the world's largest antimony mine area,China

Xikuangshan is located in Lengshuijiang City, Hunan province, China. With intensive mining and metallurgical activities, large amounts of tailing containing heavy metals (in this study, the term “heavy metals” is used for both metals and metalloids) were introduced to the soils around the mine area. Those heavy metals including antimony and other heavy metals would pose huge risk to human health and ecological environment. With a view to providing information on the extent of contamination and potential ecological risk of heavy metals in the soils of this mine area, the total contents of antimony (Sb), manganese (Mn), zinc (Zn), arsenic (As), cadmium (Cd), and lead (Pb) in the soils were examined. The results revealed that the predominant pollutants in this area were Sb, Cd, and Zn with mean concentrations being 356.58, 9.98, and 486.42 mg kg^?1, 119.66, 117.41, and 5.17 times of the corresponding background values respectively. The pollution indices (Ps) indicated that the pollution levels of all sampling zones were serious including the control zones. The ecological risk levels of all heavy metals were very high on all the sampling zones except sampling zone 7 (as considerable), and Sb, Cd, and As were regarded as making great contribution to the risk indices (RI).     

Origin and potential ecological risk assessment of trace elements in the watershed topsoil and coastal sediment of the Oualidia lagoon,Morocco

The Oualidia lagoon provides important ecosystem services, such as fishing, aquaculture, tourism and high biological and ecological productivity. Many indices have been developed to evaluate environmental risks and to estimate the anthropogenic contribution of potentially toxic elements (PTE) in surficial sediments. The results show that the concentrations of the PTE found in surface sediments due to the anthropogenic activities in the area (urban effluents, aquaculture and agricultural areas) are significantly higher than those from the local background and sediment quality guidelines (SQGs). The potential ecological and biological risk index present satisfactory results. However, the sites near to the areas where anthropogenic activities are developed present 49% probability of toxicity, while the rest of the lagoon, present 9% to 21% probability of toxicity and low potential ecological risk, except for Hg where the risk was considered to be considerable. The PTE are mainly originated from the anthropogenic activities; nevertheless, anthropogenic contributions represent up to 69% of the total sediment of content, but it depends on the PTE: Cd (16%), Ni (38%), Zn (41%), Cr (43%), Cu (56%), Hg (68%), Pb (69%). Compared with the Sub-basin soils, the PTE are higher than 80%, hence the sub-basin feeds the lagoon by these elements (PTE).     

Environmental Implications of Consumer Convenience: Coffee as a Case Study

Products of convenience are playing an increasingly large role in today's society. These products provide a competitive advantage over their conventional counterparts by requiring less time and effort to produce a similar service or experience. At the same time, these products are often also more materials intensive to produce and create a greater amount of waste. A comparative midpoint life cycle assessment of different coffee brewing systems is presented in order to explore the comparative impact of three different systems: drip filter, french press, and pod style (a product of convenience). Utilizing a comparative functional unit, the drip filter system method was found to have the greatest environmental impact in all impact categories, whereas the pod style had the least in six of the impact categories (with the french press having the least in two of the impact categories, and a tie between pod style and french press in a single impact category). This suggests that contrary to popular belief, the pod style coffee may be the more environmentally friendly option. The two most significant contributors to environmental impact in all of the categories considered was the amount of dry coffee utilized and the energy needed to brew the coffee, although in some categories considered transportation was also significant. There is the potential for the environmental impact of coffee brewing to shift if coffee wastage occurs (likely in the case of the drip filter and french press system) or if substantial changes in materials or energy consumption were to occur (in the case of the pod‐style brewing system). From the perspective of industrial ecology, this analysis suggests that, in regard to products of consumer convenience, the convenient alternative may not have a significantly greater environmental impact than its conventional counterpart, and that it may be time to question that often‐held assumption.     

The role of mass spectrometry in the characterization of biologic protein products

Introduction: Mass spectrometry (MS) is widely used in the characterization of biomolecules including peptide and protein therapeutics. These biotechnology products have seen rapid growth over the past few decades and continue to dominate the global pharmaceutical market. Advances in MS instrumentation and techniques have enhanced protein characterization capabilities and supported an increased development of biopharmaceutical products.

Areas covered: This review describes recent developments in MS-based biotherapeutic analysis including sequence determination, post-translational modifications (PTMs) and higher order structure (HOS) analysis along with improvements in ionization and dissociation methods. An outlook of emerging applications of MS in the lifecycle of product development such as comparability, biosimilarity and quality control practices is also presented.

Expert commentary: MS-based methods have established their utility in the analysis of new biotechnology products and their lifecycle appropriate implementation. In the future, MS will likely continue to grow as one of the leading protein identification and characterization techniques in the biopharmaceutical industry landscape.     

In search of relevant predictors for marine species distribution modelling using the MarineSPEED benchmark dataset

Aim

Ideally, datasets for species distribution modelling (SDM) contain evenly sampled records covering the entire distribution of the species, confirmed absences and auxiliary ecophysiological data allowing informed decisions on relevant predictors. Unfortunately, these criteria are rarely met for marine organisms for which distributions are too often only scantly characterized and absences generally not recorded. Here, we investigate predictor relevance as a function of modelling algorithms and settings for a global dataset of marine species.

Location

Global marine.

Methods

We selected well‐studied and identifiable species from all major marine taxonomic groups. Distribution records were compiled from public sources (e.g., OBIS, GBIF, Reef Life Survey) and linked to environmental data from Bio‐ORACLE and MARSPEC. Using this dataset, predictor relevance was analysed under different variations of modelling algorithms, numbers of predictor variables, cross‐validation strategies, sampling bias mitigation methods, evaluation methods and ranking methods. SDMs for all combinations of predictors from eight correlation groups were fitted and ranked, from which the top five predictors were selected as the most relevant.

Results

We collected two million distribution records from 514 species across 18 phyla. Mean sea surface temperature and calcite are, respectively, the most relevant and irrelevant predictors. A less clear pattern was derived from the other predictors. The biggest differences in predictor relevance were induced by varying the number of predictors, the modelling algorithm and the sample selection bias correction. The distribution data and associated environmental data are made available through the R package marinespeed and at http://marinespeed.org .

Main conclusions

While temperature is a relevant predictor of global marine species distributions, considerable variation in predictor relevance is linked to the SDM set‐up. We promote the usage of a standardized benchmark dataset (MarineSPEED) for methodological SDM studies.

     

Contrasting climate niches among co‐occurring subdominant forbs of the sagebrush steppe

Aim

Abiotic conditions are key components that determine the distribution of species. However, co‐occurring species can respond differently to the same factors, and determining which climate components are most predictive of geographic distributions is important for understanding community response to climate change. Here, we estimate and compare climate niches of ten subdominant, herbaceous forb species common in sagebrush steppe systems, asking how niches differ among co‐occurring species and whether more closely related species exhibit higher niche overlap.

Location

Western United States.

Methods

We used herbarium records and ecological niche modelling to estimate area of occupancy, niche breadth and overlap, and describe characteristics of suitable climate. We compared mean values and variability in summer precipitation and minimum temperatures at occurrence locations among species, plant families, and growth forms, and related estimated phylogenetic distances to niche overlap.

Results

Species varied in the size and spatial distribution of suitable climate and in niche breadth. Species also differed in the variables contributing to their suitable climate and in mean values, spatial variation and interannual variation in highly predictive climate variables. Only two of ten species shared comparable climate niches. We found family‐level differences associated with variation in summer precipitation and minimum temperatures, as well as in mean minimum temperatures. Growth forms differed in their association with variability in summer precipitation and minimum temperatures. We found no relationship between phylogenetic distance and niche overlap among our species.

Main conclusions

We identified contrasting climate niches for ten Great Basin understorey forbs, including differences in both mean values and climate variability. These estimates can guide species selection for restoration by identifying species with a high tolerance for climate variability and large climatic niches. They can also help conservationists to understand which species may be least tolerant of climate variability, and potentially most vulnerable to climate change.

     

Ecological niche differentiation in peripheral populations: a comparative analysis of eleven Mediterranean plant species

The ‘central‐peripheral’ hypothesis has provided a baseline for many studies of population dynamics and genetic variability at species distribution limits. Although peripheral populations are often assumed to occur in ecologically marginal conditions, little is known about whether they effectively occur in a distinct ecological niche. A cross‐taxa analysis of 11 Mediterranean vascular plants were studied. We quantified variation in the ecological niche between populations at the northern range limits of species in Mediterranean France and those in the central part of the distribution in continental Spain or Italy in 2013–2014. We analyzed both the macro‐ecological niche where populations occur in terms of broad habitat and altitudinal range and the micro‐ecological niche where individual plants grow in terms of soil and structural biotic and abiotic characteristics. Most species occur in a single broad habitat type common to central and peripheral populations and have a narrower altitudinal range in the latter. In contrast, for the micro‐ecological niche we detected marked variation in several niche parameters among central and peripheral populations. Although many differences are species‐specific some are common to several species. We found a trend towards narrower micro‐niche breadth in peripheral populations. Our results illustrate the importance of studying the precise ecological characteristics where plants grow and the pertinence of a multi‐species approach to correctly assess niche variation. The ecological originality of peripheral populations underlines their evolutionary potential and conservation significance.     

Elevational gradients in plant defences and insect herbivory: recent advances in the field and prospects for future research

Classic research on elevational gradients in plant–herbivore interactions holds that insect herbivore pressure is stronger under warmer, less seasonal climates characteristic of low elevations, and that this in turn selects for increased defence in low‐ (relative to high‐) elevation plants. However, recent work has questioned this paradigm, arguing that it overly simplifies the ecological complexity in which plant–insect herbivore interactions are embedded along elevational gradients. Numerous biotic and abiotic factors vary with elevation, and their simultaneous influences are the focus of current work on elevational gradients in insect herbivory and plant defences. The present review 1) synthesizes current knowledge on elevational gradients in plant–insect herbivore interactions; 2) critically analyses research gaps and highlights recent advances that contribute to filling these gaps; and 3) outlines new research opportunities to uncover underlying mechanisms and build towards a unified theory on elevational gradients. We conclude that the next generation of studies should embrace community complexity – including multi‐trophic dynamics and the multivariate nature of plant defence – and to do so by combining observational data, manipulative experiments and emerging analytical tools.