Prediction of viral filtration performance of monoclonal antibodies based on biophysical properties of feed

Controlling viral contamination is an important issue in the process development of monoclonal antibodies (MAbs) produced from mammalian cell lines. Virus filtration (VF) has been demonstrated to be a robust and effective clearance step which can provide ≥4 logs of reduction via size exclusion. The minimization of VF area by increasing flux and filter loading is critical to achieving cost targets as VFs are single use and often represent up to 10% of total purification costs. The research presented in this publication describes a development strategy focused on biophysical attributes of product streams that are directly applicable to VF process performance. This article summarizes a case study where biophysical tools (high‐pressure size exclusion chromatography, dynamic light scattering, and absolute size exclusion chromatography) were applied to a specific MAb program to illustrate how changes in feed composition (pH, sodium chloride concentration, and buffer salt type) can change biophysical properties which correlate with VF performance. The approach was subsequently refined and expanded over the course of development of three MAbs where performance metrics (i.e., loading and flux) were evaluated for two specific virus filters (Viresolve Pro and Planova 20N) during both unspiked control runs and virus clearance experiments. The analyses of feed attributes can be applied to a decision tree to guide the recommendation of a VF filter and operating conditions for use in future MAb program development. The understanding of the biophysical properties of the feed can be correlated to virus filter performance to significantly reduce the mass of product, time, and costs associated with virus filter step development. © 2015 American Institute of Chemical Engineers Biotechnol. Prog., 31:765–774, 2015     

A review of global potentially available cropland estimates and their consequences for model‐based assessments

The world's population is growing and demand for food, feed, fiber, and fuel is increasing, placing greater demand on land and its resources for crop production. We review previously published estimates of global scale cropland availability, discuss the underlying assumptions that lead to differences between estimates, and illustrate the consequences of applying different estimates in model‐based assessments of land‐use change. The review estimates a range from 1552 to 5131 Mha, which includes 1550 Mha that is already cropland. Hence, the lowest estimates indicate that there is almost no room for cropland expansion, while the highest estimates indicate that cropland could potentially expand to over three times its current area. Differences can largely be attributed to institutional assumptions, i.e. which land covers/uses (e.g. forests or grasslands) are societally or governmentally allowed to convert to cropland, while there was little variation in biophysical assumptions. Estimates based on comparable assumptions showed a variation of up to 84%, which originated mainly from different underlying data sources. On the basis of this synthesis of the assumptions underlying these estimates, we constructed a high, a medium, and a low estimate of cropland availability that are representative of the range of estimates in the reviewed studies. We apply these estimates in a land‐change model to illustrate the consequences on cropland expansion and intensification as well as deforestation. While uncertainty in cropland availability is hardly addressed in global land‐use change assessments, the results indicate a large range of estimates with important consequences for model‐based assessments.     

Sustainable limits to crop residue harvest for bioenergy: maintaining soil carbon in Australia's agricultural lands

The use of crop residues for bioenergy production needs to be carefully assessed because of the potential negative impact on the level of soil organic carbon (SOC) stocks. The impact varies with environmental conditions and crop management practices and needs to be considered when harvesting the residue for bioenergy productions. Here, we defined the sustainable harvest limits as the maximum rates that do not diminish SOC and quantified sustainable harvest limits for wheat residue across Australia's agricultural lands. We divided the study area into 9432 climate‐soil (CS) units and simulated the dynamics of SOC in a continuous wheat cropping system over 122 years (1889 – 2010) using the Agricultural Production Systems sIMulator (APSIM). We simulated management practices including six fertilization rates (0, 25, 50, 75, 100, and 200 kg N ha^?1) and five residue harvest rates (0, 25, 50, 75, and 100%). We mapped the sustainable limits for each fertilization rate and assessed the effects of fertilization and three key environmental variables – initial SOC, temperature, and precipitation – on sustainable residue harvest rates. We found that, with up to 75 kg N ha^?1 fertilization, up to 75% and 50% of crop residue could be sustainably harvested in south‐western and south‐eastern Australia, respectively. Higher fertilization rates achieved little further increase in sustainable residue harvest rates. Sustainable residue harvest rates were principally determined by climate and soil conditions, especially the initial SOC content and temperature. We conclude that environmental conditions and management practices should be considered to guide the harvest of crop residue for bioenergy production and thereby reduce greenhouse gas emissions during the life cycle of bioenergy production.     

入侵害虫菊方翅网蝽在中国的潜在分布预测

菊方翅网蝽Corythucha marmorata(Uhler,1878)是我国新近发现的外来入侵害虫,研究明确菊方翅网蝽在我国的潜在分布范围对其监测预警及科学防控具有重要意义。本研究根据菊方翅网蝽的地理分布数据及相关环境变量,运用Maxent生态位模型与ArcGIS预测了菊方翅网蝽在中国的潜在地理分布范围。预测结果表明:菊方翅网蝽在我国的适生区主要分布于100°～125°E,20°～40°N的亚热带、暖温带区域,其中高适生区主要集中在长江中下游地区,包括浙江、江苏、湖南、上海大部分地区、安徽南部、湖北南部、江西西部及南部、贵州东部、福建东部、广西北部、山东中部、河南南部以及重庆、台湾局部;此外,极端气温、平均气温、最干月份降雨量对菊方翅网蝽的潜在分布影响较大。菊方翅网蝽已在我国成功入侵并迅速蔓延成灾,应在疫区边缘地带加强监测,并采取措施防止其进一步扩散。     

Co‐occurrence patterns of trees along macro‐climatic gradients and their potential influence on the present and future distribution of Fagus sylvatica L.

Aim During recent and future climate change, shifts in large‐scale species ranges are expected due to the hypothesized major role of climatic factors in regulating species distributions. The stress‐gradient hypothesis suggests that biotic interactions may act as major constraints on species distributions under more favourable growing conditions, while climatic constraints may dominate under unfavourable conditions. We tested this hypothesis for one focal tree species having three major competitors using broad‐scale environmental data. We evaluated the variation of species co‐occurrence patterns in climate space and estimated the influence of these patterns on the distribution of the focal species for current and projected future climates. Location Europe. Methods We used ICP Forest Level 1 data as well as climatic, topographic and edaphic variables. First, correlations between the relative abundance of European beech (Fagus sylvatica) and three major competitor species (Picea abies, Pinus sylvestris and Quercus robur) were analysed in environmental space, and then projected to geographic space. Second, a sensitivity analysis was performed using generalized additive models (GAM) to evaluate where and how much the predicted F. sylvatica distribution varied under current and future climates if potential competitor species were included or excluded. We evaluated if these areas coincide with current species co‐occurrence patterns. Results Correlation analyses supported the stress‐gradient hypothesis: towards favourable growing conditions of F. sylvatica, its abundance was strongly linked to the abundance of its competitors, while this link weakened towards unfavourable growing conditions, with stronger correlations in the south and at low elevations than in the north and at high elevations. The sensitivity analysis showed a potential spatial segregation of species with changing climate and a pronounced shift of zones where co‐occurrence patterns may play a major role. Main conclusions Our results demonstrate the importance of species co‐occurrence patterns for calibrating improved species distribution models for use in projections of climate effects. The correlation approach is able to localize European areas where inclusion of biotic predictors is effective. The climate‐induced spatial segregation of the major tree species could have ecological and economic consequences.     

Modelling biome shifts and tree cover change for 2050 in West Africa

Aim Africa is expected to face severe changes in climatic conditions. Our objectives are: (1) to model trends and the extent of future biome shifts that may occur by 2050, (2) to model a trend in tree cover change, while accounting for human impact, and (3) to evaluate uncertainty in future climate projections. Location West Africa. Methods We modelled the potential future spatial distribution of desert, grassland, savanna, deciduous and evergreen forest in West Africa using six bioclimatic models. Future tree cover change was analysed with generalized additive models (GAMs). We used climate data from 17 general circulation models (GCMs) and included human population density and fire intensity to model tree cover. Consensus projections were derived via weighted averages to: (1) reduce inter‐model variability, and (2) describe trends extracted from different GCM projections. Results The strongest predicted effect of climate change was on desert and grasslands, where the bioclimatic envelope of grassland is projected to expand into the desert by an area of 2 million km². While savannas are predicted to contract in the south (by 54 ± 22 × 10⁴ km²), deciduous and evergreen forest biomes are expected to expand (64 ± 13 × 10⁴ km² and 77 ± 26 × 10⁴ km²). However, uncertainty due to different GCMs was particularly high for the grassland and the evergreen biome shift. Increasing tree cover (1–10%) was projected for large parts of Benin, Burkina Faso, Côte d’Ivoire, Ghana and Togo, but a decrease was projected for coastal areas (1–20%). Furthermore, human impact negatively affected tree cover and partly changed the direction of the projected change from increase to decrease. Main conclusions Considering climate change alone, the model results of potential vegetation (biomes) show a ‘greening’ trend by 2050. However, the modelled effects of human impact suggest future forest degradation. Thus, it is essential to consider both climate change and human impact in order to generate realistic future tree cover projections.     

基于水文地貌法模型的城市湿地水环境功能评估——以南京仙林典型湿地为例

我国正处于快速城市化发展过程中,许多湿地被改造利用成为城市湿地。如何科学评估城市湿地功能及其改变程度,是科学认识城市湿地的重要内容。基于水文地貌法,通过选取区域受城市化影响小、生态系统结构与功能接近于自然湿地的湿地作为参考湿地,利用遥感和GIS的手段以及野外实地调查方法,从湿地水环境功能角度,对南京仙林区域内典型城市湿地的水环境特征与功能进行评估。结果表明:(1)城市湿地水环境功能明显降低,其蓄水功能、净水功能、水文调节功能明显低于参考湿地;(2)受城市化景观复杂性影响,城市湿地水环境功能的改变程度呈现个性化特征,纪家边、采月湖和西湖西这3个湿地可以作为城市化过程中湿地改造的典范。这一结论可为城市化区域内湿地的合理开发利用以及湿地的保护、恢复提供科学依据。     

气候变化下栓皮栎潜在地理分布格局及其主导气候因子

栓皮栎(Quercus variabilis)是东亚天然分布最广泛的树种之一。利用最大熵(Maxent)模型对现实气候条件下栓皮栎在东亚地区的潜在分布及其分布的主导气候因子进行分析,同时结合全新世中期(6000年前)和未来气候(2050年)来模拟和预测气候变化背景下栓皮栎潜在分布格局的变化。结果表明:现实气候条件下东亚栓皮栎适生区(适宜生境和低适宜生境)面积占总研究区面积的21.88%,主要集中在东亚南部区域,在我国北起陕西中部、山西和河北南部边缘、山东,西起甘肃东部边缘、四川中东部、云南、西藏东部边缘,一直到东部沿海区域,同时在朝鲜半岛南部和日本中南部也有分布,其中适宜生境面积占研究区总面积的5.69%,主要集中在秦岭山脉、大巴山脉、伏牛山、云南的云贵高原、罗霄山脉、南岭山脉、武夷山和台湾岛;气候变化情景下,栓皮栎的适生区分布面积变化较小,但其适宜生境的分布范围却发生了较大的变化,随着全球气候的波动性变化,适宜生境分布范围逐渐向西部秦岭山脉、大巴山脉、四川、重庆和云贵高原等区域集中,并使该分布中心的适宜生境面积逐渐扩大;影响栓皮栎分布的主要气候因子为最冷月的最低气温(Bio6)、最冷季平均气温(Bio11)和年降水量(Bio12),三者的贡献率分别为48.6%、21.4%和14.2%。     

The role of the microenvironment in tumor growth and invasion

Mathematical modeling and computational analysis are essential for understanding the dynamics of the complex gene networks that control normal development and homeostasis, and can help to understand how circumvention of that control leads to abnormal outcomes such as cancer. Our objectives here are to discuss the different mechanisms by which the local biochemical and mechanical microenvironment, which is comprised of various signaling molecules, cell types and the extracellular matrix (ECM), affects the progression of potentially-cancerous cells, and to present new results on two aspects of these effects. We first deal with the major processes involved in the progression from a normal cell to a cancerous cell at a level accessible to a general scientific readership, and we then outline a number of mathematical and computational issues that arise in cancer modeling. In Section 2 we present results from a model that deals with the effects of the mechanical properties of the environment on tumor growth, and in Section 3 we report results from a model of the signaling pathways and the tumor microenvironment (TME), and how their interactions affect the development of breast cancer. The results emphasize anew the complexities of the interactions within the TME and their effect on tumor growth, and show that tumor progression is not solely determined by the presence of a clone of mutated immortal cells, but rather that it can be ‘community-controlled’.     

大鼠急性肾缺血再灌注损伤模型的建立与评估

目的：对现有的经腹部切口建立急性肾缺血再灌注损伤动物模型进行改良,探索建立急性肾缺血再灌注损伤模型的新方法。方法：实验组大鼠16例,经背部切口进入腹膜后间隙,游离钳夹双侧肾动脉45min后开放血流,建立急性肾缺血再灌注损伤模型;伪手术组8例,不夹闭肾动脉,余步骤与实验组相同;对照组8例无处理。术后通过建模成功率、组织病理检查、血肌酐和血尿素氮及氧化应激水平对模型进行评估。结果：实验组15只成功建立急性肾缺血再灌注损伤模型。术后1天病理检查显示实验组肾组织出现广泛损伤,术后实验组’肾小管坏死评分、肾MDA水平、血肌酐及血尿素氮值明显高于对照组（P〈0．05）。结论：经背部切口钳夹双侧肾动脉可建立稳定的大鼠急性肾缺血再灌注损伤模型。该造模方法简便易行,成功率高,且具备手术切口小、手术时间短及并发症少的优点,建立的模型适合于急性肾损伤的研究。