Small-molecule active pharmaceutical ingredients of approved cancer therapeutics inhibit human aspartate/asparagine-β-hydroxylase

Human aspartate/asparagine-β-hydroxylase (AspH) is a 2-oxoglutarate (2OG) dependent oxygenase that catalyses the hydroxylation of Asp/Asn-residues of epidermal growth factor-like domains (EGFDs). AspH is reported to be upregulated on the cell surface of invasive cancer cells in a manner distinguishing healthy from cancer cells. We report studies on the effect of small-molecule active pharmaceutical ingredients (APIs) of human cancer therapeutics on the catalytic activity of AspH using a high-throughput mass spectrometry (MS)-based inhibition assay. Human B-cell lymphoma-2 (Bcl-2)-protein inhibitors, including the (R)-enantiomer of the natural product gossypol, were observed to efficiently inhibit AspH, as does the antitumor antibiotic bleomycin A₂. The results may help in the design of AspH inhibitors with the potential of increased selectivity compared to the previously identified Fe(II)-chelating or 2OG-competitive inhibitors. With regard to the clinical use of bleomycin A₂ and of the Bcl-2 inhibitor venetoclax, the results suggest that possible side-effects mediated through the inhibition of AspH and other 2OG oxygenases should be considered.     

林麝源支气管败血波氏杆菌FMDBb1株的分离鉴定及全基因组序列分析

[背景] 呼吸系统疾病是圈养麝常见疾病之一,其中部分由支气管败血波氏杆菌引起,但目前关于林麝源支气管败血波氏杆菌的研究甚少。[目的] 对分离自患病林麝鼻黏液的一株疑似支气管败血波氏杆菌进行分离鉴定和全基因组序列分析,为林麝相关疾病的防治奠定基础。[方法] 将病原菌纯化培养后,通过菌落形态和生化试验初步鉴定病原菌类型,然后进行药敏试验和小鼠致病性试验以观察其耐药和毒力表型,最后对其进行全基因组测序,通过平均核苷酸一致性（Average Nucleotide Identity,ANI）比对在全基因组水平进一步评估物种间的亲缘关系,并进行基因功能注释和遗传进化分析。[结果] 该病原菌经ANI分类属于经典波氏杆菌亚种,结合菌落形态和生化结果综合鉴定为支气管败血波氏杆菌,菌株命名为FMDBb1,药敏表型显示其对林可霉素、利福平及大多数β-内酰胺类抗生素耐药,对小鼠的半数致死量为8.55×10⁶ CFU。全基因组测序显示该菌基因组大小为5 133 936 bp,基因功能注释显示其拥有强代谢能力,基因组内检测到65个经典波氏杆菌毒力因子,以及1个粉霉素和1个利福平的靶向耐药基因,同时发现19个插入序列和1个噬菌体区域的存在。序列类型为ST33,克隆复合体类型为CC6,管家基因联合建树分析显示与分离于韩国短毛猫的KVNON-570株相似性最高。[结论] 研究分离了林麝源支气管败血波氏杆菌并对其进行了全基因组测序及分析,为该病原菌感染的防治提供了宝贵的信息。     

Influence of culinary treatment on the concentration and on the bioavailability of cadmium,chromium, copper,and lead in seafood

BackgroundSeafood present important advantages for human nutrition, but it can also accumulate high levels of toxic and potentially toxic elements. Culinary treatments could influence seafood chemical element content and element bioavailability. In this study, the influence of culinary treatments on the total concentration and on the bioavailability of Cd, Cr, Cu and Pb in shark, shrimp, squid, oyster, and scallop was assessed.MethodsBoiling, frying, and sautéing with or without seasonings (salt, lemon juice and garlic) were evaluated. Total concentration and bioavailability of Cd, Cr, Cu and Pb in seafood after all these culinary treatments were compared with those in uncooked samples. Analytes were determined by triple-quadrupole inductively coupled plasma mass spectrometry (ICP-MS/MS). An alternative to express the results avoiding underestimated or overestimated values was proposed.ResultsThe analytes concentration in seafood without culinary treatment varied from 0.0030 μg g⁻¹ (shrimp) to 0.338 μg g⁻¹ (oyster) for Cd; 0.010 μg g⁻¹ (squid) to 0.036 μg g⁻¹ (oyster) for Cr; 0.088 μg g⁻¹ (scallop) to 8.63 μg g⁻¹ (oyster) for Cu, and < 0.005 μg g⁻¹ (shrimp, squid and oyster) to 0.020 μg g⁻¹ (shark) for Pb. Only Cd (in scallop) was influenced by culinary treatments (reduction from 37 to 53 % after boiling, frying, and sautéing). Bioavailability percentage varied from 11% (oyster) for Cd; 18% (oyster) to 41% (shark) for Cr; 6% (shark) for Cu, and 8% (oyster) for Pb. Bioavailability percentage was not influenced by culinary treatments.ConclusionCadmium concentration was reduced in scallop after some culinary treatments (reduction o 37-53% after boiling, frying, and sautéing), but bioavailability percentage was not influenced. The employed analytical method was adequate for the purpose, presenting import results for food safety assessment about the influence of culinary treatments on metals concentration and bioavailability in seafood.     

Covid‐19.bioreproducibility.org: A web resource for SARS‐CoV‐2‐related structural models

The COVID‐19 pandemic has triggered numerous scientific activities aimed at understanding the SARS‐CoV‐2 virus and ultimately developing treatments. Structural biologists have already determined hundreds of experimental X‐ray, cryo‐EM, and NMR structures of proteins and nucleic acids related to this coronavirus, and this number is still growing. To help biomedical researchers, who may not necessarily be experts in structural biology, navigate through the flood of structural models, we have created an online resource, covid19.bioreproducibility.org, that aggregates expert‐verified information about SARS‐CoV‐2‐related macromolecular models. In this article, we describe this web resource along with the suite of tools and methodologies used for assessing the structures presented therein.     

The AutoDock suite at 30

The AutoDock suite provides a comprehensive toolset for computational ligand docking and drug design and development. The suite builds on 30 years of methods development, including empirical free energy force fields, docking engines, methods for site prediction, and interactive tools for visualization and analysis. Specialized tools are available for challenging systems, including covalent inhibitors, peptides, compounds with macrocycles, systems where ordered hydration plays a key role, and systems with substantial receptor flexibility. All methods in the AutoDock suite are freely available for use and reuse, which has engendered the continued growth of a diverse community of primary users and third‐party developers.     

Differentiation of the binding of two ligands to a tetrameric protein with a single symmetric active site by 19F NMR

R67 dihydrofolate reductase (R67 DHFR) is a plasmid‐encoded enzyme that confers resistance to the antibacterial drug trimethoprim. R67 DHFR is a tetramer with a single active site that is unusual as both cofactor and substrate are recognized by symmetry‐related residues. Such promiscuity has limited our previous efforts to differentiate ligand binding by NMR. To address this problem, we incorporated fluorine at positions 4, 5, 6, or 7 of the indole rings of tryptophans 38 and 45 and characterized the spectra to determine which probe was optimal for studying ligand binding. Two resonances were observed for all apo proteins. Unexpectedly, the W45 resonance appeared broad, and truncation of the disordered N‐termini resulted in the appearance of one sharp W45 resonance. These results are consistent with interaction of the N‐terminus with W45. Binding of the cofactor broadened W38 for all fluorine probes, whereas substrate, dihydrofolate, binding resulted in the appearance of three new resonances for 4‐ and 5‐fluoroindole labeled protein and severe line broadening for 6‐ and 7‐fluoroindole R67 DHFR. W45 became slightly broader upon ligand binding. With only two peaks in the ¹⁹F NMR spectra, our data were able to differentiate cofactor and substrate binding to the single, symmetric active site of R67 DHFR and yield binding affinities.     

环丝氨酸联合莫西沙星治疗耐多药肺结核的疗效及对免疫功能和生活质量的影响

摘要 目的：探讨环丝氨酸联合莫西沙星治疗耐多药肺结核（MDR-TB）的疗效及对免疫功能和生活质量的影响。方法：选取2016年7月到2018年10月期间我院收治的MDR-TB患者86例作为研究对象,根据奇偶排序法将患者分为对照组（n=43,基础治疗联合莫西沙星治疗）和研究组（n=43,对照组基础上联合环丝氨酸治疗）,均治疗20个月。对比两组疗效、痰结核菌转阴率、病灶吸收率、空洞缩小率情况、免疫功能、生活质量及不良反应。结果：研究组治疗20个月后的总有效率高于对照组（P<0.05）。研究组治疗12个月后、治疗20个月后痰结核菌转阴率、病灶吸收率、空洞缩小率均高于对照组（P<0.05）。两组治疗20个月后心理功能、躯体功能、社会功能、物质生活评分均升高,且研究组高于对照组（P<0.05）。两组治疗20个月后CD8⁺较治疗前降低,且研究组低于对照组（P<0.05）,CD3⁺、CD4⁺/CD8⁺、CD4⁺较治疗前升高,且研究组高于对照组（P<0.05）。对比两组不良反应发生率无差异（P>0.05）。结论：环丝氨酸联合莫西沙星治疗MDR-TB,能够有效的促进患者机体免疫功能和生活质量的改善,并能够有效的促进临床转归,且用药安全性较高。     

莫西沙星联合纤维支气管镜药物灌注对耐多药肺结核患者T细胞亚群、肺功能和肝功能的影响

摘要 目的：探讨莫西沙星联合纤维支气管镜药物灌注对耐多药肺结核患者T细胞亚群、肺功能和肝功能的影响。方法：选取2017年2月~2018年12月期间我院收治的90例耐多药肺结核患者,根据随机数字表法分为对照组（n=45,常规基础治疗）和研究组（n=45,莫西沙星联合纤维支气管镜药物灌注）,比较两组患者痰菌转阴率、病灶吸收率、T细胞亚群、肺功能和肝功能。结果：研究组治疗6个月后的痰菌转阴率为88.89%（40/45）,高于对照组的68.89%（31/45）（P<0.05）。研究组治疗6个月后的病灶吸收率为84.44%（38/45）,高于对照组的64.44%（29/45）（P<0.05）。两组治疗6个月后第1 s用力呼气容积（FEV₁）、用力肺活量（FVC）、每分钟最大通气量（MVV）占预计值百分比、总蛋白(TP)、CD4⁺、CD4⁺/CD8⁺均升高,且研究组高于对照组（P<0.05）;丙氨酸氨基转移酶(ALT)、门冬氨酸氨基转移酶(AST)、CD8⁺均降低,且研究组低于对照组（P<0.05）。结论：莫西沙星联合纤维支气管镜药物灌注治疗耐多药肺结核,可有效阻止疾病进展,同时在改善患者T细胞亚群、肺功能和肝功能方面效果显著。     

三氟苯嘧啶不同种子处理方式对稻飞虱的控制效应

为探明三氟苯嘧啶不同种子处理方式对稻飞虱的田间防治效果、防治时长以及对稻田蜘蛛和水稻的安全性,为该药剂种子处理防治稻飞虱提供科学依据,本研究设置10％三氟苯嘧啶悬浮剂按不同浓度(0.375、0.75、1.125和1.5 g a.i./kg种子)对水稻种子分别以干种子拌种(干拌)、清水浸种后拌种(湿拌)和药剂浸种3种方式,清水处理作为空白对照.结果表明,3种处理方式下的水稻发芽率和出苗率均与空白对照间无显著差异,播种后100 d,各浓度对稻飞虱的防治效果均在90％以上;当药剂浓度相同时,干拌与湿拌防治时长要优于药剂浸种;不同浓度三氟苯嘧啶药剂处理在3种方式下稻田蜘蛛种群数量均略低于空白对照田蜘蛛数量.因此,水稻生产中使用三氟苯嘧啶0.375～1.5 g a.i./kg种子干拌或湿拌处理,可有效降低田间稻飞虱种群数量,对天敌蜘蛛影响较小,对水稻种子发芽、出苗安全,可在水稻生产中推广使用.