Recurrent origin of peripheral,coastal (sub)species in Mediterranean Senecio (Asteraceae)

Background: It is argued that coastal endemic taxa may evolve in parallel at the periphery of the distributional range of a widespread species.

Aims: We tested this hypothesis for the origins of three peripheral, coastal isolates of Senecio, S. glaucus ssp. glaucus (Israel), S. g. ssp. coronopifolius p.p. (Sicily), and S. hesperidium (Morocco), from widespread S. glaucus ssp. coronopifolius. We also determined the relative roles of selection vs. genetic drift in shaping phenotypic divergence in ssp. glaucus and S. hesperidium, using Lande’s test of neutral morphological change.

Methods: We surveyed morphological and/or allozyme variation in the three peripheral isolates and mainly inland populations of S. g. ssp. coronopifolius.

Results: Genetic data supported independent origins of the coastal taxa from nearby populations of ssp. coronopifolius. These descendant and ancestral populations showed pronounced morphological but weak genetic differentiation. Phenotypic similarities between ssp. glaucus (Israel) and S. hesperidium (Morocco) in plant height and floral traits may have resulted from parallel divergent selection from ssp. coronopifolius, though drift remains an alternative cause in S. hesperidium.

Conclusions: Our results indicate parallel ecotype formation and (sub)speciation in Senecio in which primarily selective vs. neutral determinants promoted the recurrent origin of coastal types in, respectively, Israel and Morocco.     

Identification of spawning sites and natural nurseries of fishes in the upper Paraná River,Brazil

Synopsis We studied the timing of migratory fish spawning in the last dam-free stretch of the upper Paraná River and in Itaipu Reservoir. Eggs were more common in the Amambai and Ivaï Rivers, while larvae predominated in the Paraná River and in Itaipu Reservoir. Both eggs and larvae were more abundant at night. The highest abundance of eggs was in October and that of larvae in November. Migratory species predominated in the Amambai and Paraná Rivers, and non-migratory species in the Ivaï River and Itaipu Reservoir. The predominance of eggs in the upper and middle portions, and larvae in the lower, infer that there are spawning sites in the former and nurseries in the latter. The high nocturnal abundance of eggs is associated with spawning at sunset and that of larvae with feeding, avoidance of predators and nocturnal disorientation. The presence of tributaries such as the Amambai and Ivaí Rivers in the last dam-free stretch of the Paraná River is extremely important to the maintenance of regional fish diversity and fish stocks in both the Paraná River and Itaipu Reservoir.     

Diel drift of Chironomidae larvae in a pristine Idaho mountain stream

Simultaneous hourly net collections in a meadow and canyon reach of a mountain stream determined diel and spatial abundances of drifting Chironomidae larvae. Sixty-one taxa were identified to the lowest practical level, 52 in the meadow and 41 in the canyon. Orthocladiinae was the most abundant subfamily with 32 taxa and a 24 h mean density of 294 individuals 100 m⁻³ (meadow) and 26 taxa and a mean of 648 individuals 100 m⁻³ (canyon). Chironominae was the second most abundant subfamily. Nonchironomid invertebrates at both sites and total Chironomidae larvae (meadow) were predominantly night-drifting. Parakiefferiella and Psectrocladius were day-drifting (meadow) whereas 8 other chironomid taxa (meadow) and 2 taxa (canyon) were night-drifting. All others were aperiodic or too rare to test periodicity, Stempellinella cf brevis Edwards exhibited catastrophic drift in the canyon only. The different drift patterns between sites is attributed to greater loss of streambed habitat in the canyon compared to the meadow as streamflow decreased. Consequent crowding of chironomid larvae in the canyon caused catastrophic drift or interfered with drift periodicty. This study adds to knowledge of Chironomidae drift and shows influences on drift of hydrologic and geomorphic conditions.     

A comparison of single‐sample estimators of effective population sizes from genetic marker data

In molecular ecology and conservation genetics studies, the important parameter of effective population size (N_e) is increasingly estimated from a single sample of individuals taken at random from a population and genotyped at a number of marker loci. Several estimators are developed, based on the information of linkage disequilibrium (LD), heterozygote excess (HE), molecular coancestry (MC) and sibship frequency (SF) in marker data. The most popular is the LD estimator, because it is more accurate than HE and MC estimators and is simpler to calculate than SF estimator. However, little is known about the accuracy of LD estimator relative to that of SF and about the robustness of all single‐sample estimators when some simplifying assumptions (e.g. random mating, no linkage, no genotyping errors) are violated. This study fills the gaps and uses extensive simulations to compare the biases and accuracies of the four estimators for different population properties (e.g. bottlenecks, nonrandom mating, haplodiploid), marker properties (e.g. linkage, polymorphisms) and sample properties (e.g. numbers of individuals and markers) and to compare the robustness of the four estimators when marker data are imperfect (with allelic dropouts). Extensive simulations show that SF estimator is more accurate, has a much wider application scope (e.g. suitable to nonrandom mating such as selfing, haplodiploid species, dominant markers) and is more robust (e.g. to the presence of linkage and genotyping errors of markers) than the other estimators. An empirical data set from a Yellowstone grizzly bear population was analysed to demonstrate the use of the SF estimator in practice.     

Diel emergence patterns of drifting chironomid (Diptera) pupal exuviae in the Aude River (Eastern Pyrenees,France)

Two diel emergence patterns (April and October 1990) of chironomids from a hyporhithral site (4th–5th order) in the Aude River are described. In April, 62 species were collected with a mean hourly richness of 31 (±4). The Orthocladiinae (91%) largely dominated the emergence. The total number of exuviae captured by one drift-net varied from 1300 to 11600 per one hour period. There was a clear bimodal pattern with peaks post dawn (07.00–09.00 hrs) and around sunset (18.00 hrs).In October, the total number of exuviae captured was much lower and varied from 150 to 540 per one hour period with post dawn (06.00–08.00 hrs) and post sunset (18.00 hrs) peaks. Nevertheless, the total species richness (65) was higher as was the mean hourly richness (37±4). The Orthocladiinae (68%) dominated less because of increases in the Tanytarsini (15%) and Chiromini (14%). A diel rhythm appeared in autumn emergence. Most of the Orthocladiinae exuviae were collected during daylight hours, whereas most of the Chironomini and Tanytarsini were sampled during darkness. A majority of the exuviae with a length below 3 mm emerged during daylight, but most of the exuviae above 5 mm length emerged during darkness. The exuviae with an intermediate length (3–5 mm) had an amodal diel emergence pattern. In spring and autumn, the majority of species had a bimodal emergence pattern either by day (Orthocladiinae) or by night (Chironominae). But the smallest species had either an unimodal (Thiennemaniella vittata) or bimodal (Neozavrelia fuldensis) daytime emergence. The diel emergence patterns of 10 of the most frequently recorded species are presented.     

Three New Species of Lagenophryid Peritrichs (Ciliophora) Ectocommensal on Freshwater Decapod Crustaceans from Madagascar1

One species of Lagenophrys and two species of Operculigera are described for the first time. Lagenophrys machaerigera n. sp. was discovered on the freshwater crab Gecarcinautes goudoti and varies between two extreme forms in the structure of its lorica aperture. Operculigera carcini n. sp. was also found on G. goudoti and exhibits several characteristics that set it apart from other members of its genus. Some of these characteristics also suggest a phylogenetic link between O. carcini and the genus Lagenophrys. Operculigera madagascarensis n. sp. was discovered on the parastacid crayfish Astacoides granulimanus. The occurrence of O. madagascarensis on a Madagascan parastacid and other species of Operculigera on Chilean parastacids suggests that parastacids are the oldest hosts of the genus Operculigera. Continental drift is the most likely mechanism by which species of Operculigera and parastacids could have been dispersed to distant parts of the southern hemisphere. The absence of Operculigera on Australian parastacids may be due to its replacement by the genus Setonophrys on those hosts.     

Fish drift in a Danube sidearm‐system: II. Seasonal and diurnal patterns

Seasonal and diurnal patterns of larval and juvenile fish drift were investigated in the Marchfeldkanal, a man‐made side branch of the Danube River near Vienna, Austria. A clear seasonal pattern with peak densities in mid‐June was found. Species composition varied over time, showed a site specific pattern and was dominated by tubenose goby Proterorhinus marmoratus . Water temperature was the main factor responsible for the increase of drift densities until the median drift date and repeated occurrence of early larval stages in drift indicated repeated spawning for many species. Significant differences in drift densities between different time periods of the day (day, dusk, night and dawn) were found for common bream Abramis brama , barbel Barbus barbus , chub Leuciscus cephalus , tubenose goby and roach Rutilus rutilus . The highest drift rates occurred at night (2200–0400 hours), with 86% of all larvae drifting during the hours of darkness. Fish larvae of different lengths drifting at different phases of the day were found for common bream, bleak Alburnus alburnus and chub, with largest larvae drifting during dusk (chub) and day (bleak and common bream). For bleak, all gudgeon species Gobio spp., tubenose goby, roach and for all cyprinid species combined, one 2 h night sample was found to be sufficient to predict the total 24 h drift.     

The historical biogeography of the freshwater knifefishes using mitogenomic approaches: A Mesozoic origin of the Asian notopterids (Actinopterygii: Osteoglossomorpha)

The continental distributions of freshwater fishes in the family Notopteridae (Osteoglossomorpha) across Africa, India, and Southeast Asia constitute a long standing and enigmatic problem of freshwater biogeography. The migrational pathway of the Asian notopterids has been discussed in light of two competing schemes: the first posits recent transcontinental dispersal while the second relies on distributions being shaped by ancient vicariance associated with plate-tectonic events. In this study, we determined complete mitochondrial DNA sequences from 10 osteoglossomorph fishes to estimate phylogenetic relationships using partitioned Bayesian and maximum likelihood methods and divergence dates of the family Notopteridae with a partitioned Bayesian approach. We used six species representing the major lineages of the Notopteridae and seven species from the remaining osteoglossomorph families. Fourteen more-derived teleosts, nine basal actinopterygians, two coelacanths, and one shark were used as outgroups. Phylogenetic analyses indicated that the African and Asian notopterids formed a sister group to each other and that these notopterids were a sister to a clade comprising two African families (Mormyridae and Gymnarchidae). Estimated divergence time between the African and Asian notopterids dated back to the early Cretaceous when India–Madagascar separated from the African part of Gondwanaland. Thus, estimated time of divergence based on the molecular evidence is at odds with the recent dispersal model. It can be reconciled with the geological and paleontological evidence to support the vicariance model in which the Asian notopterids diverged from the African notopterids in Gondwanaland and migrated into Eurasia on the Indian subcontinent from the Cretaceous to the Tertiary. However, we could not exclude an alternative explanation that the African and Asian notopterids diverged in Pangea before its complete separation into Laurasia and Gondwanaland, to which these two lineages were later confined, respectively.     

Selection efficiency and effective population size in Drosophila species

A corollary of the nearly neutral theory of molecular evolution is that the efficiency of natural selection depends on effective population size. In this study, we evaluated the differences in levels of synonymous polymorphism among Drosophila species and showed that these differences can be explained by differences in effective population size. The differences can have implications for the molecular evolution of the Drosophila species, as is suggested by our results showing that the levels of codon bias and the proportion of adaptive substitutions are both higher in species with higher levels of synonymous polymorphism. Moreover, species with lower synonymous polymorphism have higher levels of nonsynonymous polymorphism and larger content of repetitive sequences in their genomes, suggesting a diminished efficiency of selection in species with smaller effective population size.