Manganese and Arsenic Oxidation Performance of Bacterium-Yunotaki 86 (BY86) from Hokkaido,Japan, and the Bacterium's Phylogeny

We examined the Mn(II) oxidation performance of a bacterium, BY86, collected at Yunotaki Falls Hokkaido, Japan. The bacterium showed rapid oxidation of Mn(II), and brown precipitates containing Mn formed within a few days of incubation. The presence of higher oxidation states of Mn than Mn(II) was ascertained by the UV-vis and XANES sutdy. This bacterium did not oxidize As(III) to As(V) in the absence of Mn. In the presence of Mn, however, As(III) was rapidly oxidized to As(V) on the cell surfaces. These findings indicate that BY86 does not have the ability to directly oxidize As(III) to As(V) within a short period of contact, but indirectly oxidizes it by the Mn oxides generated on the cell surfaces. A phylogenetical study disclosed that BY86 was most closely related to Bacillus cereus with an identity of 99.90%. It is expected that our findings in this study will contribute to the study of Mn(II)-oxidizing bacteria, which play an important role in the biogeochemical cycling of Mn as well as other trace elements including As.     

钒、汞胁迫对菜心幼苗生理生化特性的影响

通过水培实验研究了钒(V)、汞(Hg)单一和复合胁迫对四九黄菜心幼苗生理生化特性的影响。结果表明:随着胁迫强度的增加,丙二醛(MDA)含量和细胞膜透性明显上升,与对照相比,MDA含量和细胞膜透性分别增加了8.4%～271.5%和22.4%～145.6%;叶绿素含量、过氧化氢酶(CAT)、过氧化物酶(POD)和超氧化物歧化酶(SOD)活性均呈先上升后下降的趋势;重金属浓度较低时,3种保护酶均有较好的协同效应,表现出较强的自我调节能力;重金属浓度较高时,叶绿素含量和3种酶的活性呈下降趋势,表明在逆境环境因子下,植物的生理特征发生变化,酶活性受到抑制;V、Hg复合胁迫对蔬菜幼苗的毒害作用大于同水平单一胁迫效应。     

葡萄基因组中KUP蛋白的生物信息学分析

植物钾(K+)转运体蛋白在K+的跨膜运输中起重要作用,进而维持植物体正常生长和代谢活动.本研究中,通过隐马尔科夫模型(HMM)和葡萄蛋白质库搜索,共找到18个葡萄钾转运体蛋白(VvKUPs).利用生物信息学方法,我们对葡萄家族12条KUP蛋白序列的系统发生和KUP基因组定位进行分析,然后对其氨基酸组成成分、理化性质以及二级结构进行预测和分析,同时还分析了葡萄与拟南芥、水稻和杨树的KUP基因家族之间的联系.基因组定位结果发现其分布在至少9条染色体上.二级结构预测结果发现不同成员间氨基酸数目、氨基酸序列间的疏水性存在一定的差异;α-螺旋和无规则卷曲为主要二级结构组成部分.基因结构分析表明,KUP基因家族成员分别含有7～10个内含子.葡萄KUP蛋白的亚细胞定位分析表明VvKUP主要定位于膜结构上.电子表达图谱分析结果表明:12条KUP基因有对应的EST序列,其中的11条KUP有相应的电子表达谱,并主要在花、果实、花序和花蕾等组织部位表达.     

MD Simulations and first principles to evaluate the role of binary Fe–V alloys layer on the radiation resistance in the alpha-iron

Radiation damage in reactor materials caused by the collision of the fast neutrons has a great impact on the reliability and safety of nuclear reactors. The element vanadium has attracted interest in many fields due to its advantageous properties in alloys. Thus, molecular dynamics simulation (MD) and first-principles calculation have been executed here to explore the radiation-resistant properties of five materials adding a layer in the bulk (pure iron and four types of Fe–V alloys containing 10%-40% V). The following results were inferred from these simulations. Firstly, the number of Frenkel pairs (FPs) at the stable quenching stage in the bulk decreases when the Fe–V alloy is added as an anti-radiation layer to the bulk. These benefits are evident for the Fe₈₀V₂₀ and alloy layers with more vanadium. The main reason is that the Fe–V binding energy is greater than the Fe-Fe binding energy, which can make the Primary Knock-On atom (PKA) lose more energy at the Fe–V alloy layer. Secondly, the average value of point-defect, cluster and defect clustered fractions in the bulk of Fe–V alloy is smaller than that in the pure iron at the stable quenching stage, especially for the Fe₈₀V₂₀ alloy.     

黄原胶生产菌株XCCNAU—92的选育

从野生型甘蓝黑腐黄单胞菌中筛选出XCCNAU—01作为育种的出发菌株。用硫酸二乙酯和氯化锂复合诱变得系列突变体,经平板、摇瓶发酵必传代试验筛选出黄原胶生产菌株XCCNAU－92。对蔗糖、玉米淀粉等碳源皆有较强的利用能力,当以蔗糖为碳源时,30℃,102r／m发酵72h,产胶量达36．25g／kg,提高12．9％,粘度达17200cp,增加43．3％,碳源转化率达72．5％。     

SpltMNPV日本分离株gp41的克隆表达及gp41和ph的进化分析

从斜纹夜蛾核型多角体病毒(Spodopteralitura multicapsid nucleopolyhedrovirus,SpltMNPV)日本分离株(C3)基因组中克隆了gp41基因.该基因编码区含993bp核苷酸,编码分子量为36.9kDa的多肽.将该基因克隆至原核表达载体pET28a,经IPTG诱导后在大肠杆菌BL21(DE3)中获得了表达.应用CLUSTAL程序分析表明,SpltMNPV日本株(C3)gp41的核苷酸序列和氨基酸序列与SpltMNPV中国G2株相似性最高,均达99.9%.用MEGA分别构建了基于gp41和ph的聚类分析图和分子进化树,发现它们具有相似的拓扑结构.将这两个基因序列结合在一起构建进化树,该树的结构与基于gp41的进化树相似.突变率分析显示gp41的突变率高于ph,这意味着在杆状病毒进化过程中,gp41和ph面临不同的选择压力.     

人类免疫缺陷病毒1型gp41结构与功能的研究进展

人类免疫缺陷病毒1型(HIV-1)通过其包膜糖蛋白(Env)介导侵入靶细胞.Env由受体特异性结合单位gp120和膜融合单位gp41组成.HIV-1的gp41分为3个功能区:膜外区、跨膜区和膜内区.膜外区是病毒感染时膜融合的主要结构基础;跨膜区通过疏水残基使Env锚定在脂质膜上;膜内区则表现多重功能,参与病毒的感染、复...     

豇豆属近缘野生种Vigna minima资源收集与表型性状初步研究

Vigna minima是豇豆属中的野生种,国内研究报道较少。本研究对搜集到的V.minima野生资源的地理分布、原生境主要性状、遗传多样性及其与野生小豆、栽培小豆性状间的差异进行了分析。结果表明:(1)搜集到的45份V.minima野生资源来源于辽宁、天津、河北、山东和北京等省、直辖市,资源在粒色、子粒大小、植株形态等方面变异丰富。(2)与栽培小豆相比,V.minima株型大,上胚轴短,叶片小,荚果细短,炸荚性强,荚色深,子粒小,粒色多样。植株和子粒性状与野生小豆相近,但种脐突出明显,且种脐长。(3)V.minima与栽培小豆间亲缘关系较远,而与野生小豆间亲缘关系较近。(4)不同地域间V.minima遗传多样性丰富,同一地域内不同材料间也存在遗传差异。     

A neural network model of attention-modulated neurodynamics

Visual attention appears to modulate cortical neurodynamics and synchronization through various cholinergic mechanisms. In order to study these mechanisms, we have developed a neural network model of visual cortex area V4, based on psychophysical, anatomical and physiological data. With this model, we want to link selective visual information processing to neural circuits within V4, bottom-up sensory input pathways, top-down attention input pathways, and to cholinergic modulation from the prefrontal lobe. We investigate cellular and network mechanisms underlying some recent analytical results from visual attention experimental data. Our model can reproduce the experimental findings that attention to a stimulus causes increased gamma-frequency synchronization in the superficial layers. Computer simulations and STA power analysis also demonstrate different effects of the different cholinergic attention modulation action mechanisms.