Effects of biotic interactions on modeled species' distribution can be masked by environmental gradients

A fundamental goal of ecology is to understand the determinants of species' distributions (i.e., the set of locations where a species is present). Competition among species (i.e., interactions among species that harms each of the species involved) is common in nature and it would be tremendously useful to quantify its effects on species' distributions. An approach to studying the large‐scale effects of competition or other biotic interactions is to fit species' distributions models (SDMs) and assess the effect of competitors on the distribution and abundance of the species of interest. It is often difficult to validate the accuracy of this approach with available data. Here, we simulate virtual species that experience competition. In these simulated datasets, we can unambiguously identify the effects that competition has on a species' distribution. We then fit SDMs to the simulated datasets and test whether we can use the outputs of the SDMs to infer the true effect of competition in each simulated dataset. In our simulations, the abiotic environment influenced the effects of competition. Thus, our SDMs often inferred that the abiotic environment was a strong predictor of species abundance, even when the species' distribution was strongly affected by competition. The severity of this problem depended on whether the competitor excluded the focal species from highly suitable sites or marginally suitable sites. Our results highlight how correlations between biotic interactions and the abiotic environment make it difficult to infer the effects of competition using SDMs.     

Dispersal influences genetic and acoustic spatial structure for both males and females in a tropical songbird

Animals exhibit diverse dispersal strategies, including sex‐biased dispersal, a phenomenon common in vertebrates. Dispersal influences the genetic structure of populations as well as geographic variation in phenotypic traits. Patterns of spatial genetic structure and geographic variation may vary between the sexes whenever males and females exhibit different dispersal behaviors. Here, we examine dispersal, spatial genetic structure, and spatial acoustic structure in Rufous‐and‐white Wrens, a year‐round resident tropical bird. Both sexes sing in this species, allowing us to compare acoustic variation between males and females and examine the relationship between dispersal and song sharing for both sexes. Using a long‐term dataset collected over an 11‐year period, we used banding data and molecular genetic analyses to quantify natal and breeding dispersal distance in Rufous‐and‐white Wrens. We quantified song sharing and examined whether sharing varied with dispersal distance, for both males and females. Observational data and molecular genetic analyses indicate that dispersal is female‐biased. Females dispersed farther from natal territories than males, and more often between breeding territories than males. Furthermore, females showed no significant spatial genetic structure, consistent with expectations, whereas males showed significant spatial genetic structure. Overall, natal dispersal appears to have more influence than breeding dispersal on spatial genetic structure and spatial acoustic structure, given that the majority of breeding dispersal events resulted in individuals moving only short distances. Song sharing between pairs of same‐sex animals decreases with the distance between their territories for both males and females, although males exhibited significantly greater song sharing than females. Lastly, we measured the relationship between natal dispersal distance and song sharing. We found that sons shared fewer songs with their fathers the farther they dispersed from their natal territories, but that song sharing between daughters and mothers was not significantly correlated with natal dispersal distance. Our results reveal cultural differences between the sexes, suggesting a relationship between culture and sex‐biased dispersal.     

扩散型与繁殖型松材线虫数字基因表达谱对比分析

【目的】松材线虫作为林业重大外来入侵种,扩散型幼虫的形成对其传播扩散起着非常重要的作用,但扩散虫态的形成与维持机制尚未阐明。【方法】通过构建松材线虫数字基因表达谱(DGE),从滞育状态的维持、化学感受、代谢途径等方面分析松材线虫不同虫态的基因表达差异。【结果】参考松材线虫基因组数据,鉴定出2种扩散型幼虫(LⅢ,LⅣ)和繁殖型幼虫(Ln)各有11184、8533和10781个基因。相对于繁殖型虫态,大多数基因在LⅣ中下调表达,该虫态中特异上调表达的基因有化感受体基因、核受体基因以及一些代谢相关基因。推测这可能与扩散型线虫滞育状态的维持相关,并在其生理功能如化学感受和媒介/寄主互作中发挥作用。GO和Pathway富集分析显示,多数代谢相关通路在LⅣ中下调表达,而在LⅢ中的表达均活跃。【结论】以上结果与LⅣ处于不进食、总体代谢水平较低等生理状态的表型相一致。     

Reproductive biology of Magnolia sinica (Magnoliaecea), a threatened species with extremely small populations in Yunnan,China

Magnolia sinica is one of the most threatened trees endemic to Southeast Yunnan. Based on our investigations, only 52 individuals and eight populations are found in the wild. M. sinica has been categorized as Critically Endangered on the IUCN Red List and identified as a “Plant Species with Extremely Small Populations (PSESP)”. Its fruit/seed set is very low and seedlings are rarely found in the wild. It is hypothesized that it may encounter obstacles to reproductive success. This study, therefore, focuses on its reproductive biology, knowledge of which is essential for effective conservation. Flowers of this species are protogynous and nocturnal, and possess a two-day rhythm of sexual presentation. For the first night of anthesis, the flowers are in the pistillate stage during which tepals open at dusk and close approx. 1 h later (except for the open outer ones). They remain closed until the next afternoon, when flowers, now in the staminate stage, re-open and remain so until the tepals drop. Nocturnal beetles enter into the flowers and remain trapped throughout the night as the flower closes, during which time they feed on tepals. Pollen-gathering bees are found to visit the re-opened flowers and the beetles are released during this stage. Two species of Pleocomidae and Curculionidae beetles appear to be effective pollinators.M. sinica is a self-compatible, pollinator-dependent species, and its fruit/seed set can be significantly increased by hand-pollination. No functional seed dispersers have been found in its extant natural habitats. These findings suggest that it may face both pollination and seed disperser insufficiencies in its current fragmented habitats, which may account for its low regeneration. Here we propose conservation strategies based on our findings.     

地理距离及环境差异对云南元江干热河谷植物群落beta多样性的影响

beta多样性反映了群落间物种组成的差异, 是生物多样性研究的热点之一。本研究通过对云南元江干热河谷41个植物群落样方进行调查, 用Jaccard相异系数表征物种beta多样性, 用样方之间的最近谱系距离(mean nearest taxon distance, MNTD)及平均谱系距离(mean pairwise distance, MPD)表征谱系beta多样性, 采用基于距离矩阵的多元回归和方差分解方法, 探讨了该区域干热河谷典型植物群落的物种beta多样性和谱系beta多样性与样方间环境差异(主要是气候)及地理距离之间的关系。结果表明: (1)群落间的地理距离和年平均温度差异对干热河谷植物群落的物种beta多样性和谱系beta多样性有显著影响; (2)地理距离对物种beta多样性和MNTD的影响最大; 地理距离和年平均温度差异对MPD的影响均较大; (3)样方间年平均温度与年平均降水量的差异和地理距离能够解释群落间beta多样性及谱系beta多样性11-13%的变异。以上结果表明, 生态位分化和扩散限制对该地区植物群落的beta多样性均有显著影响, 其中扩散限制的影响可能更大。此外, 人类活动等其他因素也很可能对元江干热河谷的群落组成具有非常重要的影响。     

Seed dispersal and seedling recruitment of trees at different successional stages in a temperate forest in northeastern China

Aims Spatial distribution of adult trees in a forest community is determined by patterns of both seed dispersal and seedling recruitment. The objectives of our study were to understand the processes of seed dispersal and seedling recruitment of dominant tree species in a temperate forest of northeastern China and to identify the factors constraining seed dispersal and seedling establishment at different stages of forest succession.Methods During three summer and autumn sessions between 2006 and 2008, altogether 113080 seeds from 22 different tree species were collected in three large field plots representing different forest types in the Changbai Mountain region of northeastern China. The spatial distribution of seed abundance was analyzed using a Syrjala test. Regeneration success of nine major tree species was assessed using variables defining 'limitations' in 'seeds' and 'seedling establishment'.Important findings We found that seed production fluctuated between years and varied greatly with forest types. Four tree species, Acer spp., Fraxinus mandshurica, Tilia amurensis and Betula spp., had the greatest seed production and the widest range of seed dispersal, whereas Quercus mongolica showed the most sustained seed production pattern. The spatial patterns of seed abundance differed significantly among forest types and years. The tree species investigated in this study differed in the degree of seed limitation, as well as in limitation of seedling establishment. There were both negative and positive correlations between seed density and seedling density, depending on site and parental tree density. Seeds of 16 tree species were found in the Populus davidiana–Betula platyphylla forest (PBF) plot, 11 in the conifer and broad-leaved mixed forest (CBF) plot but only 8 in the broad-leaved-Korean pine mixed forest (BKF) plot. The number of seed-contributing species was not only greater in the secondary forests (CBF and PBF plots) than in the primary forest (BKF plot) but was also more variable during the 3 years of assessment. Results from the correlations between seed density and seedling occurrence and that between parental tree density or seed weight and dispersal limitation confirm our intuitive expectations, i.e. heavy seeds had greater dispersal limitation but higher establishment success than light seeds.     

基于线粒体Cyt b 和核基因ZFY 探讨羊族物种之间的系统发生关系

为了阐明羊族物种之间的系统发生关系并解决岩羊属中矮岩羊物种的有效性问题,本文测定了来自金沙江河谷地区栖息于林线以上岩羊和林线以下矮岩羊共226 份粪便DNA 样品的线粒体Cyt b 基因全序列(1 140 bp)和核基因ZFY 部分序列(612 bp),结合从GenBank 中检索到的羊族物种同源DNA 序列进行比较,利用最大简约法和最大似然法构建分子系统发育树,根据获得的拓扑结构初步探讨它们的系统进化关系。结果表明,绵羊属的绵羊与山羊属、塔尔羊属、岩羊属各物种亲缘关系最远,喜马拉雅塔尔羊和岩羊属、山羊属的亲缘关系最近。在进化树的岩羊属这一分支中,金沙江河谷地带岩羊和矮岩羊与内蒙古、青海、四川其它地理种群的岩羊聚为一支,同时分布在这一区域的部分岩羊和矮岩羊在Cyt b 基因和ZFY 基因单倍型上存在共享现象。历史上的气候事件可能造成金沙江河谷地带岩羊和矮岩羊种群之间相互迁移,偏雄性扩散促进了各地理种群之间的基因交流。因此不支持矮岩羊为独立的物种,建议将金沙江河谷地带的岩羊和矮岩羊都划分到岩羊四川亚种(Pseudois nayaur szechuanensis)。由于它们的形态和生态上存在一定的分化,建议将林线以下矮岩羊作为一个独立的管理单元进行保护与管理。     

Plant sexual systems, dichogamy, and herkogamy in the Venezuelan Central Plain

Sexual system, temporal variation in sex expression, and herkogamy were evaluated in 210 plant species in the Venezuelan Central Plain (VCP). This analysis was conducted considering the life forms, habitats, flowering time, pollination systems, and dispersal syndromes of the plant species. Hermaphrodite species dominated the community (75.2%; N=158), followed by monoecious taxa (17.1%; N=36), and then dioecious (7.6; N=16). Most species were adichogamous (=homogamous) (75.2%; N=155), followed by protandrous (16.5%; N=34), and protogynous (8.3%; N=17). The frequency of herkogamous species was higher (N=124; 60.2%) than the non-herkogamous (N=82; 39.8%). The three reproductive traits interacted significantly in a way that complements their effectiveness in promoting cross-pollination and avoidance of pollen–stigma interference: hermaphrodite-adichogamous species occurred in similar frequency to herkogamous and non-herkogamous species; monoecious-adichogamous species were mostly herkogamous, and all hermaphrodite, functionally dioecious-adichogamous, species were herkogamous. Sexual system, herkogamy, and dichogamy are associated with habitats in the savanna-forest mosaic of the VCP. The proportion of dioecious species decreased from trees to annual herbs and from forest to disturbed areas. Dichogamous species were most frequent for herbaceous plants, and non-herkogamous species dominated in annual herbs. The frequency of herkogamous species decreased from forest to disturbed areas. Sexual system was significantly associated with pollination system. Most dioecious and monoecious species had generalist pollination. A three-factor log linear analysis indicated that for any combination significantly. Sexual systems and herkogamy were associated with the respective seed dispersal syndrome. Most dioecious and herkogamous species were dispersed by frugivores, while monoecious plants tended to be dispersed by granivores and wind. Flowering time of dioecious species peaked during the dry–rainy transition period, whereas that of monoecious species was greatest during the rainy season. Therefore, specific biotic and abiotic conditions may enforce the occurrence of unisexuality in the community. In a similar way, dichogamous species tend to flower during the rainy season, associated with herbaceous life form and wind pollination. These results are discussed in the context of evolutionary and ecological trends.     

Patterns of endemism of the eastern North American cave fauna

Aim Over 250 species of obligate terrestrial cave‐dwelling animals (troglobionts) are known from single caves in the eastern United States. We investigate their geographical distribution, especially in relation to other troglobionts. We relate these patterns to taxonomic group, opportunities for dispersal and geographical location. Location Caves of the United States east of the Mississippi River. Methods We associated over 3000 records of more than 450 troglobiotic species and subspecies with hexagons of 1000, 5000 and 10,000 km² in size. We calculated Moran's I, black–white joins and cubic regression of endemics on non‐endemics at all three spatial scales. For 5000 km² hexagons, we modelled the spatial autocorrelation of the residuals of the cubic regression of endemics on non‐endemics. Results Differences among orders in percentage single‐cave endemism were not significant, except for Pseudoscorpionida, which was higher (69%) than any other order. At all three scales, Moran's I and black–white joins were significant, indicating a clumped distribution of both single‐cave endemics and other troglobionts. Spatial patterns were similar at all three scales and Moran's I was highest at 5000 km². The cubic fit of endemics to non‐endemics was consistently better, with less systematic error or residuals, than were linear or quadratic models. Residuals showed a significant geographical pattern with excess endemics in more southerly locations. Main conclusions There was both a non‐spatial and spatial component to the pattern of single‐cave endemism. The non‐spatial component was the association of high levels of single‐cave endemism with areas of high diversity of non‐endemics. It may be that both are high because of high secondary productivity. Spatially, single‐cave endemism is high in central rather than peripheral areas and in the southern part of the range. It is not higher in areas of more dissected limestone, which would reduce migration rates; if anything endemism is lower. Regional spatial effects are important, indicating that cave communities cannot be understood (or protected) in isolation.