Extinction, colonization, and species occupancy in tidepool fishes

Despite the increasing sophistication of ecological models with respect to the size and spatial arrangement of habitat, there is relatively little empirical documentation of how species dynamics change as a function of habitat size and the fraction of habitat occupied. In an assemblage of tidepool fishes, I used maximum-likelihood estimation to test whether models which included habitat size provided a better fit to empirical data on extinction and colonization probabilities than models that assumed constant probabilities over all habitats. I found species differences in how extinction and colonization probabilities scaled with habitat size (and hence local population size). However, there was little evidence for a relationship between extinction and colonization probabilities and the fraction of occupied tidepools, as assumed in simple metapopulation models. Instead, colonization and extinction were independent of the fraction of occupied tidepools, favoring a MacArthur-Wilson island-mainland model. When I incorporated declines in extinction probability with tidepool volume in a simple simulation model, I found that predicted occupancy could change greatly, especially when colonization was low. However, the predicted fraction of occupied patches in the simulation model changed little when I incorporated the range of values reported here for extinction and colonization and the rate at which they scale with habitat size. Quantifying extinction and colonization patterns of natural populations is fundamental to understanding how species are distributed spatially and whether metapopulation models of species occupancy provide explanatory power for field populations. Received: 14 March 1997 / Accepted: 21 September 1997     

Assessing the role of invasive weeds in the impact of successional habitats on the bird assemblage in overgrowing agriculture

Agricultural habitats are assumed to be biodiversity refuges. However, some studies treat agricultural land management as a cause of the biodiversity decline, to which habitat loss and heterogeneity may contribute. Between the crops, the successional habitats appear – ruderal plant communities and bush areas. Their influence on farmland biodiversity is unknown. This research assessed the impact of spatial relationships between agricultural areas, semi-natural meadows and successional habitats on the bird species richness, Shannon diversity index, and Faith’s phylogenetic diversity index. An additional habitat variable was the presence of weeds, i.e., invasive Caucasian hogweeds Heracleum sp., treated as crops in the past. The birds and habitats research was on 74 sites set in pairs (invaded vs control) in south-eastern Poland. Results showed that birds assembling in agricultural and semi-natural areas were more diverse and contained protected farmland species, while birds appearing in overgrown habitats (i.e., successional and invaded) were clumped with their habitat requirements. In the presence of plant invaders, ruderal habitats negatively affected the bird phylogenetic diversity index. In invaded sites, bush areas had no positive effects on the Shannon diversity index and species richness of birds, in contrast with control sites. The presented research suggests the need to re-evaluate the importance of successional non-crop habitats considered positive in agricultural landscapes if those habitats develop in areas with plant invasion.     

“Mini-community” simulation revealed the differences of endophytic fungal communities between the above- and below-ground tissues of Ephedra sinica Stapf

The microecology of endophytic fungi in special habitats, such as the interior of different tissues from a medicinal plant, and its effects on the formation of metabolites with different biological activities are of great importance. However, the factors affecting fungal community formation are unclear. This study is the first to utilize “mini-community” remodeling to understand the above phenomena. First, high-throughput sequencing technology was applied to explore the community composition and diversity of endophytic fungi in the above-ground tissues (Ea) and below-ground tissues (Eb) of Ephedra sinica. Second, fungi were obtained through culture-dependent technology and used for “mini-community” remodeling in vitro. Then, the effects of environmental factors, partner fungi, and plant tissue fluid (internal environment) on endophytic fungal community formation were discussed. Results showed that environmental factors played a decisive role in the selection of endophytic fungi, that is, in Ea and Eb, 93.8% and 25.3% of endophytic fungi were halophilic, respectively, and 10.6% and 60.2% fungi were sensitive to high temperature (33 °C), respectively. Meanwhile, pH had little effect on fungal communities. The internal environment of the plant host further promoted the formation of endophytic fungal communities.     

青藏高原极端生境细菌多样性差异及影响因素

土壤微生物组对于生态系统的可持续性至关重要,青藏高原独特的地理环境孕育了多样的极端环境,其土壤细菌组成差异及其驱动因素尚不清楚。【目的】探究不同极端生境土壤细菌多样性及其影响因素。【方法】对7种典型的青藏高原极端生境土壤DNA进行16SrRNA基因高通量测序,通过生物信息分析,找出不同生境细菌群落组成、功能差异;结合土壤理化因子,进一步分析细菌组成差异的潜在影响因素。【结果】通过高通量测序,从7个不同生境的36个土壤样品中共获得16 323 712高质量reads,26 504个可操作分类单元(operational taxonomic units, OTUs)。在门分类水平上,各生境中注释到的放线菌门(Actinomycetota)与假单胞菌门(Pseudomonadota)相对丰度均最高;在属分类水平上,芽孢杆菌属(Bacillus)、Ambiguous＿taxa、土壤红杆菌属(Solirubrobacter)、假节杆菌属(Pseudarthrobacter)等为优势属。另外,不同生境中的细菌α多样性无显著差异,但是β多样性差异显著,并且通过LEfSe分析进一步说明了不同生境细菌群...     

Effects of the duration of flooding on species richness and floristic composition in three hectares in the Jau´ National Park in floodplain forests in central Amazonia

Rivers in Central Amazonia show annual water level fluctuations of up to 14m; the flooding period ranges from 50 to 270 days between the rising and falling phases. Differences in duration and type of flood in Amazonian floodplain forests result in a mosaic of habitats which include lakes, grasslands, forests, streams etc. To study the floristic composition, structure, variation on number of species and diversity in a forest that is seasonally flooded by a black-water river in Brazilian Amazonia, 200km NE of Manaus, I surveyed three hectares in habitats which included lake, river margin, and stream. The number of species per hectare ranged from 44 to 137. The number of trees varied from 796 to 1130. Total basal area ranged from 22.3m2 to 41.8m2. Leguminosae was the most abundant and dominant family in the river margin and stream plot, while Euphorbiaceae and Leguminosae were, respectively the most abundant and dominant families in the lake plot. The most dominant species in the river margin and stream plots was Aldina latifolia (Leguminosae), while Amanoa oblongifolia (Euphorbiaceae) was the most abundant and dominant species in the lake plot. Mean water level and flooding period decreased significantly from lake to the river margin to the stream. The mean number of species and the Shannon diversity increase significantly from the lake to the river margin to the stream habitats plots. Similarity indexes varied from 0.3 to 0.55% between the three plots sampled in this study.     

BOTTLENOSE DOLPHINS CAN GENERALIZE RULES and DEVELOP ABSTRACT CONCEPTS

Abstract: Generalization of a rule is demonstrated if the rule governs a class of problem, and the subject, after successful experience with a limited number of problems, can apply the governing rule to new problems within that class. We show that the bottlenose dolphin ( Tursiops truncatus ) is capable of such generalization for classes of problems requiting the matching of one of two alternative stimuli to a "sample" stimulus to which the animal had been previously exposed, regardless of the sensory domain used: vision, passive listening, or active echolocation. We also show this generalization capability in a related class of problem requiring a judgment of whether a single "probe" stimulus is the same as, or different from, a stimulus or stimuli previously presented. Further, one dolphin was shown capable of developing a true abstract concept of same/different through its ability to categorize pairs of simultaneously presented objects as identical or not. The suggestion that such generalization ability of dolphins may be in question because of so-called exclusion effects is shown to be not tenable when the whole body of available data is considered.     

Septic tanks as larval habitats for the mosquitoes Aedes aegypti and Culex quinquefasciatus in Playa‐Playita,Puerto Rico

Adult Aedes aegypti (Linnaeus) (Diptera: Culicidae) were previously recovered from emergence traps on septic tanks in southeastern Puerto Rico. In this study we quantified immature mosquito abundance and its relationship with structural variables of the septic tanks and chemical properties of the water containing raw sewage. A miniaturized floating funnel trap was used to sample 89 septic tanks for larvae in the Puerto Rican community of Playa‐Playita. Aedes aegypti larvae were recovered from 18% of the sampled tanks (10.3 larvae per septic tank per day). Larval presence was positively associated with cracking of the septic tank walls and uncovered access ports. Larval abundance was positively associated with cracking of the septic tank walls and larger tank surface areas, and inversely associated with the total dissolved solids (TDS). Culex quinquefasciatus (Say) larvae were also recovered from 74% of the septic tanks (129.6 larvae per septic tank per day). Larval presence was negatively associated with TDS in the water and larval abundance was positively associated with cracking of the septic tank walls. A screened, plastic emergence trap was used to sample 93 septic tanks within the community for Ae. aegypti and Cx. quinquefasciatus adults. Aedes aegypti adults were recovered from 49% of the sampled tanks (8.7 adults per septic tank per day) and Cx. quinquefasciatus adults were recovered from 97% of the sampled tanks (155.5 adults per septic tank per day). Aedes aegypti adult presence was positively associated with cracking, uncapped openings and septic water pH. The Ae. aegypti adult counts were positively associated with cracking and inversely associated with TDS and conductivity. This study marks the first published record of the recovery of Ae. aegypti larvae from holding tanks containing raw sewage in the Caribbean region. Our study indicates that Ae. aegypti larvae are present in sewage water and that septic tanks have at least the potential to maintain dengue transmission during the dry season.     

Leaf species identity and combination affect performance and oviposition choice of two container mosquito species

Abstract 1. Resource diversity can be an important determinant of individual and population performance in insects. Fallen parts of plants form the nutritive base for many aquatic systems, including mosquito habitats, but the effect of plant diversity on mosquito production is poorly understood. 2. To determine the effects of diverse plant inputs on larval mosquitoes, experiments were conducted that examined how leaves of Vitis aestivalis, Quercus virginiana, Psychotria nervosa, and Nephrolepis exaltata affected the container species Aedes triseriatus and Aedes albopictus. 3. The hypothesis that leaf species have different effects on larval survival, growth, population performance, and oviposition choice of the two mosquito species was tested. The hypothesis that larval performance of A. albopictus responds additively to combinations of the four plant species was also tested. 4. Larval survival and growth differed among the four leaf species, and oviposition preference differed among the two leaf species examined. Measurements of population performance demonstrated significant variation between leaf treatments. Larval outcomes for A. albopictus were significantly affected by leaf combination, and the hypothesis of additivity could be rejected. 5. These results indicate that individual leaf species are important in determining the performance of container dwelling mosquitoes, which grow larger and survive better on mixed‐species resource than expected, based on an additive model of resource utilisation.     

Genetic variation and reproduction strategy of Gentiana pannonica in different habitats

Gentiana pannonicascop. (Gentianaceae) is a long-lived perennial mountain species. It is a typical east−Alpine element. The centre of its distribution is situated in the eastern Alps, where the species occurs in alpine and subalpine areas. Besides the Alps, G. pannonica occurs also in the Bohemian Forest, Czech Republic. The reproduction strategy and genetic variation of this species endangered in the Czech Republic were studied. Genetic variation within and among six populations of G. pannonica in the Bohemian Forest and two populations in the Alps was studied using random amplified polymorphic DNAs (RAPD) markers. The variation found between populations from primary habitats and populations situated in the secondary mountain meadows accounted for 5% of the total genetic variation, whereas no significant genetic diversity was found between two different regions (Bohemian Forest, the Alps). Most of the variation is distributed among individuals within populations in the primary habitats, specifically 77% in the Bohemian Forest and 79% in the Alps. The pattern of among-population variation was substantially different between primary and secondary habitats. While among-population variation in primary habitats was low in both of the regions (21–23%), the proportion of RAPD variation among populations in secondary habitats was distinctly higher (65%). Within-population genetic variation was higher in primary habitats than in the secondary ones. This may be a consequence of processes such as genetic drift or bottleneck, and founder effects caused by changes in their distribution during the Holocene period. The differences of vegetation composition, seedlings recruitment and seed set were investigated in the field. Vegetation composition differed between primary and secondary habitats of G. pannonica and seedlings recruitment was recorded only in primary habitats. The reproduction output of the species under study is probably influenced by the availability of pollinators.     

Controlled activation of the Cpx system is essential for growth of Yersinia enterocolitica

Until recently, three spirochete genospecies were considered to be the causative agents of Lyme borreliosis (LB) in Europe: Borrelia burgdorferi sensu stricto, Borrelia afzelii and Borrelia garinii . However, the DNA of Borrelia valaisiana, Borrelia lusitaniae, Borrelia spielmanii and Borrelia bissettii has already been detected in samples of human origin, or the spirochetes were isolated from the patients with symptoms of LB. Molecular analysis of 12 selected serum samples collected in the regional hospital confirmed the presence of B. bissettii DNA in cases of single and multiple infection in patients with symptomatic borreliosis or chronic borrelial infection. The presence of B. bissettii as a single strain in patients provides strong support of the fact that B. bissettii might be a causative agent of the disease. After the first isolation of B. bissettii from the samples of human origin in Slovenia, following the detection of this species in cardiac valve tissue of the patient with endocarditis and aortic valve stenosis in the Czech Republic, here we present additional molecular data supporting the involvement of B. bissettii in LB in Europe.