Multi-scale trajectory analysis:powerful conceptual tool for understanding ecological change

The model at the basis of trajectory analysis is conceptually simple.When applied to time series vegetation data,the projectile becomes a surrogate for vegetation state,the trajectory for the evolving vegetation process,and the properties of the trajectory for the true process characteristics.Notwithstanding its simplicity,the model is well-defined under natural circumstances and easily adapted to serial vegetation data,irrespective of source.As a major advantage,compared to other models that isolate the elementary processes and probe vegetation dynamics for informative regularities on the elementary level,the trajectory model allows us to probe for regularities on the level of the highest process integrity.Theories and a data analytical methodology developed around the trajectory model are outlined,including many numerical examples.A rich list of key references and volumes of supplementary information supplied in the Web Only Appendices rounds out the presentation.     

Phenotypic sex differentiation of blue tilapia under constant and fluctuating thermal regimes and its adaptive and evolutionary implications

Oreochromis aureus exposed during the first 28 days of exogenous feeding to constant 35° C, or fluctuating temperatures (day at 35° C, night at 27° C, and vice versa) showed significantly ( P <0·05) faster growth, least size heterogeneity and better survival rates than siblings under constant 27° C. Constant high temperatures had a strong masculinizing effect (M: F sex ratios of 7·33–19·00: 1·00 v . 0·75–0·82: 1·00 in controls reared at 27° C). Fluctuating temperatures had less masculinizing potential but still produced sex ratios significantly skewed to the detriment of females (M: F sex ratios of 2·33–11·50: 1·00). This suggests that ambient temperature may have represented a sufficient environmental pressure for the selection of thermolabile sex-determinism in this species, and presumably in other Oreochromis spp. The evolutionary advantage of thermosensitivity in Oreochromis spp. is discussed, considering a framework where individual advantages oppose, to some degree, to the population or species interest.     

II. Model Building: An Electrical Theory of Control of Growth and Development in Animals,Prompted by Studies of Exogenous Magnetic Field Effects (Paper I), and Evidence of DNA Current Conduction,In Vitro

A theory of control of cellular proliferation and differentiation in the early development of metazoan systems, postulating a system of electrical controls “parallel” to the processes of molecular biochemistry, is presented. It is argued that the processes of molecular biochemistry alone cannot explain how a developing organism defies a stochastic universe.

The demonstration of current flow (charge transfer) along the long axis of DNA through the base-pairs (the “π-way) in vitro raises the question of whether nature may employ such current flows for biological purposes. Such currents might be too small to be accessible to direct measurement in vivo but conduction has been measured in vitro, and the methods might well be extended to living systems. This has not been done because there is no reasonable model which could stimulate experimentation. We suggest several related, but detachable or independent, models for the biological utility of charge transfer, whose scope admittedly outruns current concepts of thinking about organization, growth, and development in eukaryotic, metazoan systems. The ideas are related to explanations proposed to explain the effects demonstrated on tumors and normal tissues described in Article I (this issue).

Microscopic and mesoscopic potential fields and currents are well known at sub-cellular, cellular, and organ systems levels. Not only are such phenomena associated with internal cellular membranes in bioenergetics and information flow, but remarkable long-range fields over tissue interfaces and organs appear to play a role in embryonic development (Nuccitelli, ). The origin of the fields remains unclear and is the subject of active investigation. We are proposing that similar processes could play a vital role at a “sub-microscopic level,” at the level of the chromosomes themselves, and could play a role in organizing and directing fundamental processes of growth and development, in parallel with the more discernible fields and currents described.     

Body size determines soil community assembly in a tropical forest

Tropical forests shelter an unparalleled biological diversity. The relative influence of environmental selection (i.e., abiotic conditions, biotic interactions) and stochastic–distance‐dependent neutral processes (i.e., demography, dispersal) in shaping communities has been extensively studied for various organisms, but has rarely been explored across a large range of body sizes, in particular in soil environments. We built a detailed census of the whole soil biota in a 12‐ha tropical forest plot using soil DNA metabarcoding. We show that the distribution of 19 taxonomic groups (ranging from microbes to mesofauna) is primarily stochastic, suggesting that neutral processes are prominent drivers of the assembly of these communities at this scale. We also identify aluminium, topography and plant species identity as weak, yet significant drivers of soil richness and community composition of bacteria, protists and to a lesser extent fungi. Finally, we show that body size, which determines the scale at which an organism perceives its environment, predicted the community assembly across taxonomic groups, with soil mesofauna assemblages being more stochastic than microbial ones. These results suggest that the relative contribution of neutral processes and environmental selection to community assembly directly depends on body size. Body size is hence an important determinant of community assembly rules at the scale of the ecological community in tropical soils and should be accounted for in spatial models of tropical soil food webs.     

Primate Language and the Playback Experiment,in 1890 and 1980

The playback experiment – the playing back of recorded animal sounds to the animals in order to observe their responses – has twice become central to celebrated researches on non-human primates. First, in the years around 1890, Richard Garner, an amateur scientist and evolutionary enthusiast, used the new wax cylinder phonograph to record and reproduce monkey utterances with the aim of translating them. Second, in the years around 1980, the ethologists Peter Marler, Robert Seyfarth, and Dorothy Cheney used tape recorders in a broadly similar way to test whether the different predator calls of one monkey species, vervet monkeys, warn about different kinds of predator. This paper explores the circumstances leading to the ca. 1890 invention and the ca. 1980 reinvention of the primate playback experiment. In both instances, I show, the experiment served as a riposte to those arguing, on scientific grounds, that an unbridgeable gap divides human language from animal communication. I also consider how far progress in technology explains the timing of invention and reinvention. I conclude with some reflections on sifting contingent from inevitable aspects of the history of the primate playback experiment, and of scientific achievements more generally.     

Plastic,inquisitive roots and intelligent plants in the light of some new vistas in plant biology

Abstract

Metaphors, such as those used in the title of this article, are often useful for the comprehension of specialised topics in plant biology. A brief attempt is made to elucidate one of these metaphors, plant “intelligence”, as it relates to the plastic responses of roots and root systems to their environment. Tropisms and nastic movements of root apices are two expressions of an inherent plasticity of form exhibited by roots. In soil, roots are exposed to multiple stimuli, many of which can potentially elicit such movements. Hence, a key question is how roots respond to and process the different stimuli which simultaneously reach their surfaces. Assuming that roots always use the same site along their length to express their movement responses, and that they also use an auxin‐based information‐transduction pathway, the most evident choices for the processing of stimuli are that roots either prioritise the various incoming stimuli and respond only to the strongest or they amalgamate stimuli and mount an averaged compromise response to all of them. The proposal that plants may be “intelligent”, especially in respect to their plastic growth responses, is one that draws upon knowledge of this faculty from animal biology. Also implied is that plants and animals are sufficiently similar to share usage of this term “intelligence”. But an alternative view is that plants and animals are sufficiently different and so intelligence is an unfitting term. Following the line of enquiry into creative evolution initiated by Henri Bergson, plants can be viewed differently to animals. The tendency of plants is towards instinctive behaviour rather than intelligent behaviour.     

Times of Plenty, Times of Less: Last-Millennium Societal Disruption in the Pacific Basin

During the last millennium in the Pacific Basin (islands and continental rim) there was a marked contrast between ‘times of plenty’ and ‘times of less’ for its human societies. This contrast is attributable to climate and sea-level variations, notably the Medieval Warm Period (a.d. 700–1250) and the Little Ice Age (a.d. 1350–1800) separated by a time of rapid cooling and sea-level fall called the ‘a.d. 1300 Event.’ Outlines of the times of plenty during the Medieval Warm Period and the times of less during the Little Ice Age are given, supported by a number of examples. These confirm a general picture of societal collapse as a result of the a.d. 1300 Event. Well-dated human responses to the a.d. 1300 Event (establishment of fortified settlements, end of ocean voyaging) allow links to potential nonhuman causes to be strengthened. Although more data referring to both (natural) changes and their human effects are needed, a conclusion involving environmental determinism is inescapable.