Evolutionary and biochemical differences between human and monkey acidic mammalian chitinases

Acidic mammalian chitinase (AMCase), an enzyme implicated in the pathology of asthma, is capable of chitin cleavage at a low pH optimum. The corresponding gene (CHIA) can be found in genome databases of a variety of mammals, but the enzyme properties of only the human and mouse proteins were extensively studied. We wanted to compare enzymes of closely related species, such as humans and macaques. In our attempt to study macaque AMCase, we searched for CHIA-like genes in human and macaque genomes. We found that both genomes contain several additional CHIA-like sequences. In humans, CHIA-L1 (hCHIA-L1) is an apparent pseudogene and has the highest homology to CHIA. To determine which of the two genes is functional in monkeys, we assessed their tissue expression levels. In our experiments, CHIA-L1 expression was not detected in human stomach tissue, while CHIA was expressed at high levels. However, in the cynomolgus macaque stomach tissue, the expression pattern of these two genes was reversed: CHIA-L1 was expressed at high levels and CHIA was undetectable. We hypothesized that in macaques CHIA-L1 (mCHIA-L1), and not CHIA, is a gene encoding an acidic chitinase, and cloned it, using the sequence of human CHIA-L1 as a guide for the primer design. We named the new enzyme MACase (Macaca Acidic Chitinase) to emphasize its differences from AMCase. MACase shares a similar tissue expression pattern and pH optimum with human AMCase, but is 50 times more active in our enzymatic activity assay. DNA sequence of the mCHIA-L1 has higher percentage identity to the human pseudogene hCHIA-L1 (91.7%) than to hCHIA (84%). Our results suggest alternate evolutionary paths for human and monkey acidic chitinases.     

芽胞抗力快速弱化技术研究

以L-丙氨酸缓冲液为发芽剂,结合芬顿反应原理,观察发芽-氧化损伤效应对芽胞的杀灭效果,以期为新型炭疽疫源地净化方法的深入研究奠定基础。以腊样芽胞为试验菌,采用透射电镜、激光扫描共聚焦显微镜、活菌计数等方法观察芽胞发芽过程的超微结构、核酸含量变化,以及在芬顿反应的联合作用下发芽体的活性变化。在20~30 min的发芽过程中,芽胞核心密度降低,核心与皮质、皮质与外壁之间界限模糊,芽胞外壁和芽胞衣有破裂,通透性增加,进一步有皮质消失、细胞核与细胞质融合、细胞膜基本形成的现象;发芽体荧光强度不断增加,显示菌体中核酸的活性和含量不断增加;发芽体对化学因子的抗力明显下降,H2O2浓度为0.20 mol/L的Fenton反应系统作用60 min时,发芽体灭活可达到3.016个对数级。诱导发芽和反应的联合处理程序可显著提高芽胞的灭活水平。     

RAPD反应体系优化的研究

筛选随机扩增多态性DNA(RAPD)反应体系的最佳优化方案,以期获得稳定可靠的实验结果。选取对结果影响较大的4种因素(Taq酶、dNTP、引物、Mg2+)进行单因素设计,寻找最佳反应浓度。优化后得到4种因素的最佳反应浓度分别为Taq酶2.5U、dNTP 200μmol/L、引物1μmol/L、Mg2+2.5mmol/L。在优化的反应条件下,RAPD的稳定性和重复性均好。     

肌球蛋白Ⅵ定向运动的蒙特卡罗模拟

根据myosin Ⅵ分子马达头部核苷的变化建立一个四态循环,然后利用蒙特卡罗方法模拟分子马达的动力学性质,讨论了myosin Ⅵ速度、滞留时间与溶液中ATP浓度、ADP浓度和负载力F的关系。模拟得到：myosin Ⅵ会在轨道微丝上进行梯跳运动并且每次在微丝上的滞留时间并不相同;另外,myosin Ⅵ的速度会随着ATP浓度的增加而增大,随着ADP浓度和负载力的增加而减小;负载力对myosin Ⅵ在胞内执行输运还是连接功能起一定的调节作用。     

猪肝酯酶催化苯乙二醇环碳酸酯水解最佳反应条件的研究

猪肝酯酶是手性合成中重要的水解酶,在猪肝酯酶的催化下,苯乙二醇环碳酸酯发生水解,生成苯乙二醇。实验围绕影响猪肝酯酶催化反应活性的4个主要因素进行了系统研究,得到了最优的酶浓度（15g/L）、pH值（8.0）、温度（25~30℃）及有机溶剂种类和浓度（二氧六环,65%v/v）,为猪肝酯酶催化苯乙二醇环碳酸酯反应的进一步研究奠定了基础。     

Crystal Structure of the Electron Carrier Domain of the Reaction Center Cytochrome cz Subunit from Green Photosynthetic Bacterium Chlorobium tepidum

In green sulfur photosynthetic bacteria, the cytochrome c_z (cyt c_z) subunit in the reaction center complex mediates electron transfer mainly from menaquinol/cytochrome c oxidoreductase to the special pair (P840) of the reaction center. The cyt c_z subunit consists of an N-terminal transmembrane domain and a C-terminal soluble domain that binds a single heme group. The periplasmic soluble domain has been proposed to be highly mobile and to fluctuate between oxidoreductase and P840 during photosynthetic electron transfer. We have determined the crystal structure of the oxidized form of the C-terminal functional domain of the cyt c_z subunit (C-cyt c_z) from thermophilic green sulfur bacterium Chlorobium tepidum at 1.3-Å resolution. The overall fold of C-cyt c_z consists of four α-helices and is similar to that of class I cytochrome c proteins despite the low similarity in their amino acid sequences. The N-terminal structure of C-cyt c_z supports the swinging mechanism previously proposed in relation with electron transfer, and the surface properties provide useful information on possible interaction sites with its electron transfer partners. Several characteristic features are observed for the heme environment: These include orientation of the axial ligands with respect to the heme plane, surface-exposed area of the heme, positions of water molecules, and hydrogen-bond network involving heme propionate groups. These structural features are essential for elucidating the mechanism for regulating the redox state of cyt c_z.     

Sex-biased aggression and male-only care at sea in Brünnich's Guillemots Uria lomvia and Razorbills Alca torda

In several groups in the order Charadriformes, biparental care is followed by a period of male‐only care. Several hypotheses attempting to explain extended male parental care in shorebirds do not fit the Alcini. In a previous study of Brünnich’s Guillemots Uria lomvia and Razorbills Alca torda, we did not find support for female‐biased parental effort at the breeding site that would lead to males being in better condition to care for chicks at sea. However, in both species, males spent more off‐duty time at the breeding site than females, suggesting greater involvement in the defence of egg or chick, breeding site and mate. We predicted that there would be a male bias in size and aggressive behaviour associated with parental roles. To test this, body size and aggression of attending male and female Brünnich’s Guillemots and Razorbills were measured during incubation and brooding on the Gannet Islands, Labrador. Parental aggression was measured using natural observations of all agonistic interactions and, in Razorbills only, in situ responses to presentations of a predator model. In both species, males were significantly larger than females in culmen and gape length. Guillemot males initiated agonistic interactions more frequently than females during incubation. In contrast, female Guillemots were subjected to aggression more frequently than males and as a result were involved in more fights. In addition, the few chicks that were seen to die were being attended by single females. During the brooding period, Razorbill males responded aggressively to intruders more frequently than females, made more aggressive responses than females, and responded aggressively more frequently and more intensely than females to a predator model. In both species there was a similar male bias in morphology and behaviour that is consistent with male parents being more capable of protecting their chick, a probable advantage to chick survival during the uniparental care phase of some Charadriformes.     

Bimetallic complexes of porphyrinphenanthroline: Preparation and catalytic activities

Condensation of tetraphenylporphyrin-2,3-dione with 1,10-phenanthroline-5,6-diamine provided porphyrinphenanthroline (2) as the desired ligand. Metallation of the porphyrinic site of 2 with CoCl₂, NiCl₂, ZnCl₂ and CuCl₂ afforded the corresponding metal complexes [Co(2)] (8a), [Ni(2)] (8b), [Zn(2)] (8c) and [Cu(2)] (8d), respectively. Subsequent reactions of these metalloporphyrins with [(COD)PdCl₂] yielded the corresponding bimetallic complexes [Co/Pd (9a), Ni/Pd (9b), Zn/Pd (9c) and Cu/Pd (9d)] in high yields. The bimetallic complex 9e (Mg/Pd) was prepared directly by complexation of 2 with MgBr₂ and [(COD)PdCl₂]. All complexes were characterized by both spectroscopic and elemental analyses. In addition, crystal structure of 9c was determined to confirm its formulation. The use of these bimetallic complexes as pre-catalysts for Mizoroki-Heck coupling reaction has been examined.     

Preparation of cobalt sandwich diphosphine ligand [(η-C5H4Pr)Co(η-C4(PPh2)2Ph2)] and its chelated palladium complex: Application of diphosphine ligand in the preparation of mono-substituted ferrocenylarenes

The reaction of (η⁵-C₅H₄ⁱPr)Co(PPh₃)₂ with PhCCPPh₂ furnished two isomeric cyclobutadiene-substituted Cp′CoCb diphosphines, [(η⁵-C₅H₄ⁱPr)Co(η⁴-1,2-(PPh₂)₂C₄Ph₂)] (5-cis) and [(η⁵-C₅H₄ⁱPr)Co(η⁴-1,3-(PPh₂)₂C₄Ph₂)] (5-trans). Further reaction of 5-cis with one molar equivalent of Pd(COD)Cl₂ gave palladium complex [(η⁵-C₅H₄ⁱPr)Co(η⁴-1,2-(PPh₂)₂C₄Ph₂)-PdCl₂] (6) in good yield. Both of the molecular structures of 5-cis and 6 were determined by single-crystal X-ray diffraction methods. Unexpectedly, the palladium complex 6 was found to be more efficient than the combination of the commonly used Buchwald’s ligand, biphenyl-2-yl-di-tert-butyl-phosphane, with Pd(OAc)₂ as the catalytic precursor in the Suzuki-Miyaura reaction between ferroceneboronic acid and 4-bromoaldehyde. The X-ray structural analysis and DFT study of several palladium complexes containing sandwich-type diphosphine chelating ligands revealed that the variations in bite angles are much larger than those in bite distances. The more energetically favorable conformation in the Pd(II) complexes is the one with bite angle close to 90°.