Introducing the Multivariate Dale Model in Population‐Based Genetic Association Studies

Until recently, the most common parametric approaches to study the combined effects of several genetic polymorphisms located within a gene or in a small genomic region are, at the genotype level, logistic regressions and at the haplotype level, haplotype analyses. An alternative modeling approach, based on the case/control principle, is to regard exposures (e.g., genetic data such as derived from Single Nucleotide Polymorphisms – SNPs) as random and disease status as fixed and to use a marginal multivariate model that accounts for inter‐relationships between exposures. One such model is the multivariate Dale model. This model is based on multiple logistic regressions. That is why the model, applied in a case/control setting, leads to straightforward interpretations that are similar to those drawn in a classical logistic modeling framework. (© 2004 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim)     

Hume and the argument for biological design

There seems to be a widespread conviction — evidenced, for example, in the work of Mackie, Dawkins and Sober — that it is Darwinian rather than Humean considerations which deal the fatal logical blow to arguments for intelligent design. I argue that this conviction cannot be well-founded. If there are current logically decisive objections to design arguments, they must be Humean — for Darwinian considerations count not at all against design arguments based upon apparent cosmological fine-tuning. I argue, further, that there are good Humean reasons for atheists and agnostics to resist the suggestion that apparent design — apparent biological design and/or apparent cosmological fine-tuning — establishes (or even strongly supports) the hypothesis of intelligent design.     

Seasonal variability in mercury inputs into the Ria de Aveiro,Portugal

Water, suspended particulate matter (SPM) and sediments were collected from the Esteiro de Estarreja (Ria de Aveiro, Portugal), which receives considerable quantities of waste mercury from a chlor-alkali plant. Dissolved and particulate Hg concentrations in the effluent ranged between 4 –167 g I^–1 and 141–3144 g g^–1, respectively, at pH values of >10. The effluent plume undergoes significant chemical changes during advection downestuary. The evidence suggested that adsorption of dissolved Hg onto organic-rich SPM was an important process. A maximum sediment Hg concentration of 500 g g^–1 was found about 1.5 km from the discharge, as a result of the settling of Hg-rich SPM. Downestuary Hg concentrations in sediments decline to about 100 g g^–1 at the mouth of the Esteiro. The particle-water interactions are discussed in terms of the transport of dissolved and particulate Hg into the Ria de Aveiro.     

Predicting mean and variance of all possible lines and hybrids from designs with partially inbred progenies

Two-factor mating designs at consecutive S_n and S_(n+1) levels (S₀ and S₁ S₁ and S₂, or F₂ and F₃) allow estimation of all components of the variation among homozygous lines and F₁ hybrids that can be derived from a given population. They also allow for the prediction of the mean of these lines and single-cross hybrids. Some tests for the presence of epistasis are possible at the levels of means and of variances. Such mating designs can be very useful for predicting the value of the best possible lines or the best possible F₁ hybrids when it is difficult to produce, at an experimental level for exploratory purposes, either lines or hybrids.     

Genetics of size and growth rate through sexual maturity in freshwater-reared coho salmon (Oncorhynchus kisutch)

Genetic parameters of size through sexual maturity have been relatively unexplored for Pacific salmon. In this study, individually tagged coho salmon were raised in freshwater, and the heritabilities of size and growth rate were estimated at several intervals between 13 and 24 months of age (spawning). Heritability estimates for size were moderate to high from 13 to 19 months of age, ranging from 0.36 to 0.50, and lower from 21 months to spawning at 24 months, ranging from 0.17 to 0.32. Heritabilities of specific growth rates estimated over 3-month intervals were moderate from 16 to 21 months of age, ranging from 0.21 to 0.34. Genetic and phenotypic correlations between sizes measured at different ages were moderate to high, ranging from about 0.7 to 1.0. Correlations between growth rate and size indicated that the larger fish were the fastest growing between 16 and 19 months of age and were slower growing between 19 and 21 months of age.     

Etude olfactométrique de l'action de diverses substances allélochimiques végétales dans la recherche de l'hote par Diadromus pulchellus (Hymenoptera,Ichneumonidae)

Résumé La recherche de l'habitat d'un hôte potentiel par D. pulchellus, endoparasite considéré comme spécialiste des nymphes d'A. assectella, est abordée chez les adultes femelles et mâles, en olfactométrie, par l'étude de leur comportement locomoteur. L'activité locomotrice et l'attraction sont ainsi analysées en présence de substances allélochimiques issues ou non de végétaux pouvant abriter un hôte. Que les composés soufrés testés soient stables ou non, ils ne déclenchent pas d'attraction chez les hyménoptères quel que soit leur sexe et le type d'olfactomètre utilisé, contrairement aux imagos du phytophage-hôte, A. assectella, attirés par les composés soufrés instables spécifiques du poireau. L'activité locomotrice des hyménoptères des deux sexes est stimulée par divers composés volatils soufrés de synthèse ou émis naturellement par les Crucifères et par les Allium consommés par les larves d'A. assectella. Les substances efficaces sont généralément stables et sont caractérisées par le groupement actif R-S-, à condition que R ne soit pas un allyle. Par ailleurs, des composés volatils non soufrés contenus dans des végétaux autres que les Allium et les Crucifères ne stimulent pas le comportement locomoteur des hyménoptères. Ces différentes observations permettent d'envisager que D. pulchellus est un spécialiste inféodé à des microlépidoptères s'alimentant sur des végétaux soufrés et non sur les seuls Allium.

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Summary Searching the host habitat by the endoparasite wasp Diadromus pulchellus, considered to be a specialist of Acrolepiopsis assectella nymphs, is studied in females and males by analysis of locomotory behaviour in olfactometers. Thus, locomotor activity and attraction are studied in the presence or absence of air-borne volatiles emitted by plants able to shelter a potential host-moth. Stable and unstable sulphur compounds used do not release attraction in female and male ichneumonids whatever the type of olfactometer used. By contrast, phytophagous host adults are attracted by unstable specific sulphur compounds of the leek. Locomotor activities of D. pulchellus females and males are stimulated by various volatile sulphur compounds of synthetic origin or naturally occurring in Allium eaten by A. assectella larvae and in Crucifera. The effective compounds generally are stable and characterized by the active group R-S — in which the alkyl moiety must not be an allyl one. On the other hand, volatiles without sulphur, emitted by plants which do not belong to Cruciferae or Allium, do not stimulate the hymenopteran locomotor activity. These observations suggest that D. pulchellus is oligophagous, attracted to microlepidoptera developing on plants containing sulphur compounds and not only on Allium.

     

A dimeric germacranolide and other sesquiterpene lactones from Mikania species

The investigation of two Mikania species, both previously placed in the genus Kanimia, afforded in addition to known compounds several new germ     

Dynamic organization of mitochondrial membranes: A crosslinking study with dimethylsuberimidate

Rat liver mitochondria were treated with dimethylsuberimidate, a bifunctional alkylating agent, and the effects were evaluated kinetically. Concurrently with the modification of amino groups, mitochondrial proteins were crosslinked and the organelles lost their osmotic response. When the dimethylsuberimidate reaction was performed in the presence of succinate, more primary amino groups were available when compared with a sucrose medium. Concomitantly, osmotic stabilization and crosslinking of mitochondrial proteins were accelerated. The activity of aspartate aminotransferase was also studied in crosslinked mitochondria. The enzyme activity was only slightly modified when mitochondria were amidinated in a sucrose medium and solubilized thereafter with Triton X-100 or cetyltrimethylammonium bromide. In contrast, in the presence of succinate, 60% of activity was lost after solubilization with Triton X-100, but not after solubilization with cetyltrimethylammonium bromide. This finding was correlated with the changes in intramitochondrial localization of the enzyme (A. Waksman and A. Rendon, 1974,Biochimie54, 907–924). When carbonylcyanide-p-trifluoromethoxyphenylhydrazone was added in both cases (sucrose or sucrose plus succinate), the rates of osmotic stabilization, amidination reaction, crosslinking of proteins, and aspartate aminotransferase activity were similar to those observed in a sucrose medium alone. The present results suggest that organizational changes of the mitochondrial membranes induced by succinate, including intramitochondrial protein movement, are prevented by carbonylcyanide-p-trifluoromethoxyphenylhydrazone.     

Developpement,Croissance et fecondite de cladoceres en fonction de la temperature et du niveau trophique. Elevage experimental in situ dans deux etangs

Samples of Daphnia longispina, Ceriodaphnia quadrangula and Bosmina longirostris have been simultaneously reared in cages immersed in two fish ponds differing principally by their trophic status.Vital parameters such as duration of postembryonic stage, rate of growth of young and adults as well as fecundity were studied against environmental factors.The importance of food quantity, temperature and of their interaction on size, rate of growth and fecundity was investigated.The magnitude of the discrepancies between these parameters as measured under natural and laboratory conditions is stressed.

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Developpement, Croissance et fecondite de cladoceres en fonction de la temperature et du niveau trophique. Elevage experimental in situ dans deux etangs

Institut Royal des Sciences Naturelles de Belgique et Service de Biologie, Université de l'Etat à Mons