Upper range limit establishment after wildfire of an obligate-seeding montane forest tree fails to keep pace with 20th century warming

Aims How species respond to climate change at local scales will depend on how edaphic and biological characteristics interact with species physiological limits and traits such as dispersal. Obligate seeders, those species that depend on fire for recruitment, have few and episodic opportunities to track a changing climate envelope. In such cases, long-distance seed dispersal will be necessary to take advantage of rare recruitment opportunities. We examine recruitment patterns and seedling growth below, at and above the timberline of an obligate-seeding Australian montane forest tree (Eucalyptus delegatensis) after stand-replacing fire, and place these changes in the context of regional warming.Methods We use two methods to detect whether E. delegatensis can establish and persist above the timberline after stand-replacing wildfire in montane forests in south-east Australia. First, we examine establishment patterns by using belt transects at six sites to quantify how changes in post-fire recruit density with increasing distance above the timberline seven years post-fire. Second, to determine whether dispersal or physiological constraints determine post-fire establishment patterns, we transplanted seedlings and saplings into bare ground above (100 m elevation), at, and below (50 m elevation) timberline 18-months after fire. We monitored seedling growth and survival for one growing season.Important findings There was minimal upslope migration of the species after fire with most saplings observed near seed-bearing timberline trees, with only occasional outpost saplings. Transplanted seedlings and saplings survived equally well across one growing season when planted above existing timberlines, relative to saplings at or below the timberline. Seedling and sapling growth rates also did not differ across these location, although seedlings grew at much faster rates than saplings. These findings suggest that upslope growing season conditions are unlikely to limit initial range expansion of trees after fire. Instead, it is more likely that seed traits governing dispersal modulate responses to environmental gradients, and global change more generally.     

Deletion of Type I glutamine synthetase deregulates nitrogen metabolism and increases ethanol production in Clostridium thermocellum

Clostridium thermocellum rapidly deconstructs cellulose and ferments resulting hydrolysis products into ethanol and other products, and is thus a promising platform organism for the development of cellulosic biofuel production via consolidated bioprocessing. While recent metabolic engineering strategies have targeted eliminating canonical fermentation products (acetate, lactate, formate, and H₂), C. thermocellum also secretes amino acids, which has limited ethanol yields in engineered strains to approximately 70% of the theoretical maximum. To investigate approaches to decrease amino acid secretion, we attempted to reduce ammonium assimilation by deleting the Type I glutamine synthetase (glnA) in an essentially wild type strain of C. thermocellum. Deletion of glnA reduced levels of secreted valine and total amino acids by 53% and 44% respectively, and increased ethanol yields by 53%. RNA-seq analysis revealed that genes encoding the RNF-complex were more highly expressed in ΔglnA and may have a role in improving NADH-availability for ethanol production. While a significant up-regulation of genes involved in nitrogen assimilation and urea uptake suggested that deletion of glnA induces a nitrogen starvation response, metabolomic analysis showed an increase in intracellular glutamine levels indicative of nitrogen-rich conditions. We propose that deletion of glnA causes deregulation of nitrogen metabolism, leading to overexpression of nitrogen metabolism genes and, in turn, elevated glutamine levels. Here we demonstrate that perturbation of nitrogen assimilation is a promising strategy to redirect flux from the production of nitrogenous compounds toward biofuels in C. thermocellum.     

Rate heterogeneity across Squamata,misleading ancestral state reconstruction and the importance of proper null model specification

The binary‐state speciation and extinction (BiSSE) model has been used in many instances to identify state‐dependent diversification and reconstruct ancestral states. However, recent studies have shown that the standard procedure of comparing the fit of the BiSSE model to constant‐rate birth–death models often inappropriately favours the BiSSE model when diversification rates vary in a state‐independent fashion. The newly developed HiSSE model enables researchers to identify state‐dependent diversification rates while accounting for state‐independent diversification at the same time. The HiSSE model also allows researchers to test state‐dependent models against appropriate state‐independent null models that have the same number of parameters as the state‐dependent models being tested. We reanalyse two data sets that originally used BiSSE to reconstruct ancestral states within squamate reptiles and reached surprising conclusions regarding the evolution of toepads within Gekkota and viviparity across Squamata. We used this new method to demonstrate that there are many shifts in diversification rates across squamates. We then fit various HiSSE submodels and null models to the state and phylogenetic data and reconstructed states under these models. We found that there is no single, consistent signal for state‐dependent diversification associated with toepads in gekkotans or viviparity across all squamates. Our reconstructions show limited support for the recently proposed hypotheses that toepads evolved multiple times independently in Gekkota and that transitions from viviparity to oviparity are common in Squamata. Our results highlight the importance of considering an adequate pool of models and null models when estimating diversification rate parameters and reconstructing ancestral states.     

Cell biology in China: Focusing on the lysosome

The view that lysosomes are merely the recycling bins of the cell has changed greatly during recent years. Lysosomes are now known to play a central role in signal transduction, cellular adaptation, plasma membrane repair, immune responses and many other fundamental cellular processes. In conjunction with the seminal discoveries made by international colleagues, many important questions regarding lysosomes are being addressed by Chinese scientists. In this review, we briefly summarize recent exciting findings in China on lysosomal signaling, biogenesis, integrity and physiological functions.     

A P4‐ATPase subunit of the Cdc50 family plays a role in iron acquisition and virulence in Cryptococcus neoformans

The pathogenic fungus Cryptococcus neoformans delivers virulence factors such as capsule polysaccharide to the cell surface to cause disease in vertebrate hosts. In this study, we screened for mutants sensitive to the secretion inhibitor brefeldin A to identify secretory pathway components that contribute to virulence. We identified an ortholog of the cell division control protein 50 (Cdc50) family of the noncatalytic subunit of type IV P‐type ATPases (flippases) that establish phospholipid asymmetry in membranes and function in vesicle‐mediated trafficking. We found that a cdc50 mutant in C. neoformans was defective for survival in macrophages, attenuated for virulence in mice and impaired in iron acquisition. The mutant also showed increased sensitivity to drugs associated with phospholipid metabolism (cinnamycin and miltefosine), the antifungal drug fluconazole and curcumin, an iron chelator that accumulates in the endoplasmic reticulum. Cdc50 is expected to function with catalytic subunits of flippases, and we previously documented the involvement of the flippase aminophospholipid translocases (Apt1) in virulence factor delivery. A comparison of phenotypes with mutants defective in genes encoding candidate flippases (designated APT1, APT2, APT3, and APT4) revealed similarities primarily between cdc50 and apt1 suggesting a potential functional interaction. Overall, these results highlight the importance of membrane composition and homeostasis for the ability of C. neoformans to cause disease.     

Autophagy is required for gamete differentiation in the moss Physcomitrella patens

Autophagy, a major catabolic process in eukaryotes, was initially related to cell tolerance to nutrient depletion. In plants autophagy has also been widely related to tolerance to biotic and abiotic stresses (through the induction or repression of programmed cell death, PCD) as well as to promotion of developmentally regulated PCD, starch degradation or caloric restriction important for life span. Much less is known regarding its role in plant cell differentiation. Here we show that macroautophagy, the autophagy pathway driven by engulfment of cytoplasmic components by autophagosomes and its subsequent degradation in vacuoles, is highly active during germ cell differentiation in the early diverging land plant Physcomitrella patens. Our data provide evidence that suppression of ATG5-mediated autophagy results in reduced density of the egg cell-mediated mucilage that surrounds the mature egg, pointing toward a potential role of autophagy in extracellular mucilage formation. In addition, we found that ATG5- and ATG7-mediated autophagy is essential for the differentiation and cytoplasmic reduction of the flagellated motile sperm and hence for sperm fertility. The similarities between the need of macroautophagy for sperm differentiation in moss and mouse are striking, strongly pointing toward an ancestral function of autophagy not only as a protector against nutrient stress, but also in gamete differentiation.     

广州地区红火蚁工蚁的巢外活动及有翅蚁的婚飞规律

为了阐明红火蚁Solenopsis invicta Buren的发生危害规律,为制定红火蚁的监测与防治措施提供科学依据,本研究调查了广州地区（113°45′E,22°43′N）红火蚁工蚁巢外活动日节律和季节性变化,以及有翅蚁的婚飞活动。结果表明,工蚁巢外活动日节律随季节或月份的不同而存在着明显差异：其中12-2月份的日活动节律为单峰型,即在中午温度较高时数量较大,而在5-10月份的日活动节律为双峰型,即在上午或下午工蚁数量较大,其余月份的活动为不明显的双峰型。工蚁巢外活动数量和时间随季节的不同而有显著差异。其中以6月和10月份的日活动数量最多,而在1月和2月份的活动数量最少,时间最短,其余月份活动数量居中。工蚁在阵雨前后的活动数量明显多于晴天,但处于降雨时刻的巢外工蚁数量极少。蚁巢受侵扰后出巢工蚁数量在30 s内最大,之后便随时间的延长而逐渐减少,该种现象可以用房室函数进行描述。另外,工蚁的巢外数量会随侵扰强度的加大而增加。在试验区内全年都可见到红火蚁婚飞,但婚飞活动主要集中在3-5月份,每日婚飞活动主要发生在下午,并主要发生在雨前或雨后。上述结果对于了解我国红火蚁的发生危害规律和提升其监控技术水平有较大参考价值。     

Relationships between stream macroinvertebrate communities and new flood‐based indices of glacial influence

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