浙江水源地河流浮游动物多样性与环境因子的通径分析

为探明水源地河流浮游动物多样性及与水环境因子的关系, 利用浮游动物多样性参数监测水质, 2010-2014年间, 我们于每年的冬季(1月)、春季(4月)、夏季(7月)和秋季(10月), 对浙江2个水源地河流采样站(H1站和H2站)展开浮游动物种类组成、丰度和多样性指数的季节性调查, 同时测定水环境因子。结果表明, H1站和H2站浮游动物平均丰度分别为1,387.4 ind./L和873.0 ind./L, 小型浮游动物(轮虫 + 桡足类无节幼体)丰度分别占92.8% (H1站)和91.5% (H2站)。两采样站轮虫、枝角类和桡足类的优势种均为针簇多肢轮虫(Polyarthra trigla)、短尾秀体溞(Diaphanosoma brachyurum)和温剑水蚤(Thermocyclops sp.)。多元逐步回归与通径分析结果表明: 冬季氮磷比是轮虫类Shannon-Wiener多样性指数(H′)波动的限制因子, 主要通过总磷含量对轮虫类H′指数产生较大的间接正向作用; 春季氮磷比是轮虫类H′指数发展的决策因子; 秋季氮磷比可通过总氮含量对轮虫类H′指数产生较大的间接正向作用。冬季氨氮、总氮含量分别是甲壳动物体积多样性指数(Hs)的决策因子和限制因子。夏季溶解氧含量是总浮游动物物种丰富度(d)波动的限制因子, 主要通过pH值对d指数产生较大的间接正向作用, 作用机制表现为轮虫类H′指数随着夏季溶解氧含量的升高呈极显著上升(P < 0.01), 而甲壳动物Hs指数则显著下降(P < 0.05)。水源地河流环境因子与浮游动物多样性之间的相互关系为浙江水源地生态学监测提供了可能性。     

What would it take to describe the global diversity of parasites?

How many parasites are there on Earth? Here, we use helminth parasites to highlight how little is known about parasite diversity, and how insufficient our current approach will be to describe the full scope of life on Earth. Using the largest database of host–parasite associations and one of the world’s largest parasite collections, we estimate a global total of roughly 100 000–350 000 species of helminth endoparasites of vertebrates, of which 85–95% are unknown to science. The parasites of amphibians and reptiles remain the most poorly described, but the majority of undescribed species are probably parasites of birds and bony fish. Missing species are disproportionately likely to be smaller parasites of smaller hosts in undersampled countries. At current rates, it would take centuries to comprehensively sample, collect and name vertebrate helminths. While some have suggested that macroecology can work around existing data limitations, we argue that patterns described from a small, biased sample of diversity aren’t necessarily reliable, especially as host–parasite networks are increasingly altered by global change. In the spirit of moonshots like the Human Genome Project and the Global Virome Project, we consider the idea of a Global Parasite Project: a global effort to transform parasitology and inventory parasite diversity at an unprecedented pace.     

Gene expression remodelling and immune response during adaptive divergence in an African cichlid fish

Variation in gene expression contributes to ecological speciation by facilitating population persistence in novel environments. Likewise, immune responses can be of relevance in speciation driven by adaptation to different environments. Previous studies examining gene expression differences between recently diverged ecotypes have often relied on only one pair of populations, targeted the expression of only a subset of genes or used wild‐caught individuals. Here, we investigated the contribution of habitat‐specific parasites and symbionts and the underlying immunological abilities of ecotype hosts to adaptive divergence in lake–river population pairs of the cichlid fish Astatotilapia burtoni. To shed light on the role of phenotypic plasticity in adaptive divergence, we compared parasite and microbiota communities, immune response, and gene expression patterns of fish from natural habitats and a lake‐like pond set‐up. In all investigated population pairs, lake fish were more heavily parasitized than river fish, in terms of both parasite taxon composition and infection abundance. The innate immune response in the wild was higher in lake than in river populations and was elevated in a river population exposed to lake parasites in the pond set‐up. Environmental differences between lake and river habitat and their distinct parasite communities have shaped differential gene expression, involving genes functioning in osmoregulation and immune response. Most changes in gene expression between lake and river samples in the wild and in the pond set‐up were based on a plastic response. Finally, gene expression and bacterial communities of wild‐caught individuals and individuals acclimatized to lake‐like pond conditions showed shifts underlying adaptive phenotypic plasticity.     

Temperature and multiple parasites combine to alter host community structure

Predicting the effects of climate change requires understanding complex interactions among multiple abiotic and biotic factors. By influencing key interactions among host species, parasites can affect community and ecosystem structuring. Yet, our understanding of how multiple parasites and abiotic factors interact to alter ecosystem structure remains limited. To empirically test the role of temperature variation and parasites in shaping communities, we used a multigenerational mesocosm experiment composed of four sympatric freshwater crustacean species (isopods and amphipods) that share up to four parasite species. Mesocosms were assigned to one of four different treatments with contrasting seasonal temperatures (normal and elevated) and parasite exposure levels (continuous and arrested (presence or absence of parasite larvae in mesocosm)). We found that parasite exposure and water temperature had interactive effects on the host community. Continuous exposure to parasites altered the community structure and differences in water temperature altered species abundance. The abundance of the amphipod Paracalliope fluviatilis decreased substantially when experiencing continuous parasite exposure and elevated water temperatures. Elevated temperatures also led to parasite-induced mortality in another amphipod host, Paracorophium excavatum. Contrastingly, isopod hosts were affected much less, suggesting increasing temperatures in conjunction with higher parasite exposure might increase their relative abundance in the community. Changes in invertebrate host populations have implications for other species such as fish and birds that consume crustaceans as well as having impacts on ecosystem processes, such as aquatic primary production and nutrient cycling. In light of climate change predictions, parasite exposure and rise in average temperatures may have substantial impacts on communities and ecosystems, altering ecosystem structure and dynamics.     

Archaeobotanical analysis of a Bronze Age well from Sardinia: A wealth of knowledge

In 2008, during a rescue excavation in the Sa Osa area, near the town of Cabras (Sardinia, Italy), a Nuragic settlement was discovered. The excavation revealed numerous pits, wells and structures dug by the local communities between the Early Copper Age and the Iron Age. These structures were interpreted as elements of a settlement mainly involved in primary production. The most remarkable structure is Well-N, radiocarbon and archaeologically dated to the Late Bronze Age, which has yielded large amounts of waterlogged plant remains, animal and fish bones and pottery. Despite the limited set of samples, the combination of macro-remain and pollen analyses in this unique context provides important information useful for exploring not only local subsistence systems but also human impact on the surrounding environment. Grapes and figs are the most abundant remains together with other fruits and edible vascular plants. Remains of melon and mulberry were identified being the earliest remains of these two species for Western Europe. Their presence may confirm early trade between Nuragic people and the eastern Mediterranean and/or African coasts. Intentional selection of wood suggests practices associated to the collection of raw material for specific technological demands. The presence of intestinal parasites in the pollen record points to the possible use of the well as a cesspit, at least in its later use, and this is one of the earliest evidence of this type of structures in prehistoric contexts.     

Glycosaminoglycans in infectious disease

Glycosaminoglycans (GAGs) are complex carbohydrates that are ubiquitously present on the cell surface and in the extracellular matrix. Interactions between GAGs and pathogens represent the first line of contact between pathogen and host cell and are crucial to a pathogen's invasive potential. Their complexity and structural diversity allow GAGs to control a wide array of biological interactions influencing many physiological and pathological processes, including adhesion, cell‐to‐cell communication, biochemical cascades, and the immune response. In recent years, increasing evidence indicates an extraordinary role for GAGs in the pathogenesis of viruses, bacteria and parasites. Herein, we examine the interface between GAGs and different pathogens, and address the divergent biological functions of GAGs in infectious disease. We consider approaches to use this understanding to design novel therapeutic strategies addressing new challenges in the treatment of infectious diseases.