Proteins identified through predictive metagenomics as potential biomarkers for the detection of microbiologically influenced corrosion

The unpredictability of microbial growth and subsequent localized corrosion of steel can cause significant cost for the oil and gas industry, due to production downtime, repair, and replacement. Despite a long tradition of academic research and industrial experience, microbial corrosion is not yet fully understood and thus not effectively controlled. In particular, biomarkers suitable for diagnosing microbial corrosion which abstain from the detection of the classic signatures of sulfate-reducing bacteria are urgently required. In this study, a natural microbial community was enriched anaerobically with carbon steel coupons and in the presence of a variety of physical and chemical conditions. With the characterization of the microbiome and of its functional properties inferred through predictive metagenomics, a series of proteins were identified as biomarkers in the water phase that could be correlated directly to corrosion. This study provides an opportunity for the further development of a protein-based biomarker approach for effective and reliable microbial corrosion detection and monitoring in the field.     

硫酸盐还原菌与油田金属管道腐蚀

硫酸盐还原菌（sulfate-reducing bacteria,SRB）是一类利用硫酸盐和其他氧化态硫化物,或利用元素硫作为电子受体,并将其还原成S2-的原核生物。在长时间开采原油过程中,地层需要通过金属管道注水来维持油气输出压力,而输水管壁上很容易形成生物膜垢。该生物膜垢的形成是微生物腐蚀发生的必要条件,也是微生物对金属腐蚀问题难以解决的主要原因。     

高温油藏生物膜内硫酸盐还原菌的腐蚀机理及防治策略

硫酸盐还原菌(sulfate-reducing bacteria,SRB)广泛分布于高温、高压及高盐的石油油藏中,在油藏硫循环中起主导作用。SRB能在油藏生物膜内生长,有微量低分子有机酸时利用硫酸盐为电子受体并将其还原成硫化氢。硫化氢会腐蚀管道,导致原油泄露等其他安全问题,每年造成的经济损失超过7 000亿元。本文首先总结了油藏生物膜内微生物菌群多样性,分析了生物膜内SRB及其相关菌群的协同腐蚀机理;然后讨论了高温油藏SRB介导的硫氮氢生物地球化学循环过程、胞外电子传递机制及其腐蚀作用,并通过几个高温油藏SRB生物膜内腐蚀的现场案例进一步阐明了SRB的腐蚀机制。在此基础上,提出了应对高温油藏生物膜内SRB腐蚀的生物纳米防治策略,这为高温油藏管道防腐提供了新思路。     

Electrochemical concepts and techniques in the study of stainless steel ennoblement

Electrochemical theory and technique used to investigate microbially influenced corrosion is discussed with a focus on methods used to demonstrate the manganic-oxide mechanism of stainless steel Ennoblement. The concept of mixed potential and its relationship to the current-voltage behavior of stainless steel is developed. This concept is used to interpret microbially induced changes in corrosion potential, polarization behavior, surface-oxide abundance, and the redox environment at submerged metal surfaces. Microelectrode, capacitance, and coulometric methods are described that can be used to discriminate electrochemical effects caused by changes in solution properties from those caused by mineral deposition at the metal surface. The variety of electrochemical, wet-chemical, microbiological, and surface analytical techniques used to demonstrate the effect of biomineralized manganese dioxide on the electrochemical behavior of stainless steel are summarized.     

Morphology of the endometrial microvasculature during early placentation in the rat

Summary The morphology of the uterine microvasculature during early placentation was investigated by light microscopy, scanning electron microscopy of microvascular corrosion casts and transmission electron microscopy in rats 26 and 50 h after initiation of implantation. Increased vascular permeability at implantation sites was observed as a positive blue-dye test, spacing of vessels, and as localized extravasations of resin from postcapillary venules in the center of the endometrium. The subepithelial capillary plexus in the primary decidual zone adjacent to the blastocyst was shut down 50 h after initiation of implantation, most probably due to swelling of the metabolically activated endothelium and volume expansion of the decidual cells. This phenomenon coincided with the mesometrial orientation of the inner cell mass of the blastocyst; it may be a uterine mechanism to direct the ectoplacental cone toward the patent vessels in the mesometrial portion of the uterus. The remaining vessels at implantation sites were generally fewer, larger in diameter, more irregular in caliber, and more uniformly oriented along the implantation axis than their counterparts at inter-implantation sites. No vascular sprouts were observed during the interval studied.     

Variation in sessile microflora as function of flow velocity on coupons exposed to seawater

The variability of several groups of microorganisms on AISI 1020 carbon steel coupons as a function of seawater velocity in a water circulation loop was investigated. The metal probes as well as electrodes were fixed onto ducts connected to a 35l capacity tank, in order to study both biofilm formation and some electrochemical parameters. The experiments were carried out at different seawater velocities. The technique of the most probable number was used to enumerate bacterial aerobes and anaerobes as well as sulphate-reducing bacteria and iron-reducing bacteria. Fungi were quantified by counting the number of colony forming units. At velocities of 3.6 cm/s, which correspond to a laminar flow, the numbers of aerobic and anaerobic bacteria attached to the metal surfaces reached a maximum. Such values were markedly reduced at velocities of 17.4–26.0 and 34.8 cm/s. The corrosion rate at the start of the process was 1.4 mm/year, decaying to levels of about 0.4–0.6 mm/year over the experimental period. Analysis of loss of carbon steel coupons mass after 35 days of the process indicated a mean corrosion rate of approximately 2 mm/year. This revised version was published online in November 2006 with corrections to the Cover Date.     

Laboratory studies on biomachining of copper using Staphylococcus sp.

The possibility of using bacteria to drill metallic surfaces has been demonstrated using Staphylococcus sp., a facultative anaerobic bacterium, isolated from corroded copper piping. The experiment involved exposure of copper coupons (25 mm × 15 mm × 3 mm) to a culture of Staphylococcus sp. for a maximum period of 7 days. Coupons exposed to sterile bacterial growth medium were used as controls. Exposed coupons were removed intermittently and observed microscopically for the extent of drilling. The total pit area and volume on these coupons were determined using image analysis. The results showed that both the biomachined area and volume increased with the duration of coupon exposure. In the drilling experiment, a copper thin film 2 μm thick was perforated by this bacterium within a period of 7 days. In conclusion, the results suggested that bacteria can be used as a tool for machining metallic surfaces.     

海洋环境下腐蚀微生物研究进展北大核心

海洋环境的复杂多变性使海洋腐蚀成为一个日益严重的全球性问题。海洋腐蚀在造成巨大经济损失的同时,还带来了严重的环境污染以及人员安全问题,使其成为海洋经济发展中必须要解决的关键问题。据统计海洋环境中20%的腐蚀由微生物引起,腐蚀微生物(microbiologically influenced corrosion,MIC)以生物膜的形式存在于金属表面,其主要包括细菌、古菌、真菌及藻类等。基于对以往研究的综述,本文总结了这4类海洋微生物的研究进展,阐述了海洋腐蚀环境中腐蚀微生物的种类、群落组成影响因素及其作用机理等内容;同时,文中概述了微生物对金属材料促进腐蚀或抑制腐蚀的影响因素及其作用机制,并归纳了当前海洋环境中微生物腐蚀的防治方法;最后,本研究对海洋环境下微生物腐蚀研究及防治的发展趋势进行了论述,以期为腐蚀机制的研究与防腐工作的实施提供参考。     

An experimental study on post-mortem dissolution and overgrowth processes affecting coccolith assemblages: A rapid and complex process

Coccolith dissolution together with post-mortem morphological features are immensely important phenomena that can affect assemblage compositions, complicate taxonomic identification as well as provide valuable palaeoenvironmental insights. This study summarizes the effects of pH oscillations on post-mortem coccolith morphologies and the abundances and compositions of calcareous nannoplankton assemblages in three distinct types of material—(i) Cretaceous chalk, (ii) Miocene marls, and (iii) late Holocene calcareous ooze. Two independent experimental runs within a semi-enclosed system setting were realized to observe assemblage alterations. One experiment was realized with the presence of bacteria and, in contrast, the second one inhibited their potential effect on the studied system. The pH was gradually decreased within the range of 8.3–6.4 using a reaction of CO₂ with H₂O forming weak carbonic acid (H₂CO₃), thereby affecting [${\mathrm{CO}}_3^{2-}$]. Further, a subsequent overgrowth study was carried out during spontaneous degassing accompanied by a gradual pH rise. The experiment revealed that the process and intensity of coccolith corrosion and subsequent overgrowth build-ups are influenced by a plethora of different factors such as (i) pH and associated seawater chemistry, (ii) mineral composition of the sediment, (iii) the presence of coccoliths within a protective substrate (faecal pellets, pores, pits), and (iv) the presence/absence of bacteria. Nannoplankton assemblages with corroded coccoliths or with coccoliths with overgrowth build-ups showed that the observed relative abundances of taxa experienced alteration from the original compositions. Additionally, extreme pH oscillations may result in enhanced morphological changes that make coccoliths unidentifiable structures, and might even evoke the absence of coccoliths in the fossil record.     

Variation in sessile microflora during biofilm formation on AISI-304 stainless steel coupons

Coupons of stainless steel type AISI-304 were exposed to the industrial cooling system of a petrochemical plant fed by seawater from the Guanabara Bay, Rio de Janeiro, Brazil, in order to study thein situ formation of biofilms. Bacteria, microalgae and fungi were detected on the coupons as soon as 48 h after exposure. Their respective numbers were determined at times 48, 96 and 192 h and over the following 8 weeks. Aerobic, anaerobic and sulfate-reducing bacteria were quantified according to the technique of the most probable number, and fungi by the pour plate technique. The number of microorganisms present in the forming biofilm varied over the experimental period, reaching maximal levels of 14×10¹¹ cells cm^–2, 30×10¹³ cells cm^–2, 38×10¹¹ cells cm^–2 and 63×10⁵ cells cm^–2, respectively, for aerobic bacteria, anaerobic bacteria, sulfate-reducing bacteria and fungi, and the dynamics of this variation depended on the group of microorganisms.Bacillus sp,Escherichia coli, Serratia sp andPseudomonas putrefaciens were identified among the aerobic bacteria isolated. Additionally, microalgae and bacteria of the genusGallionella were also detected. Nonetheless, no evidence of corrosion was found on the stainless steel type AISI-304 coupons over the experimental period.