Tree-ring analysis of traditional native bark-stripping at Ship Island, Southeast Alaska, USA

Tree-ring analyses of 23 bark-stripped trees, mostly Thuja plicata (western red cedar) but also Chamaecyparis nootkatensis (yellow cedar) and Picea sitchensis (Sitka spruce), help describe traditional Native tree-bark exploitation at a site north of Ketchikan in southeast Alaska, USA. Tree-ring samples exposed 36 cultural scars dating from between a.d. 1718 and 1912, showing that Natives landed on this hazardous stretch of Clarence Strait to take tree bark in 29 (about 15%) of the 195 years spanned by the sample. One-third of these culturally modified trees had multiple scars indicating repeated use of individual trees. The most intensive forest use occurred between 1852 and 1895, while the lack of bark scars after 1912 marks a decline in traditional Native craft. A burst of bark-stripping between 1779 and 1787 may be associated with the legendary last battle between the Stikine Tlingit of Alaska and the Tsimshian of British Columbia. The sample is compared with dated samples from British Columbia (Canada) and Washington State, USA.     

Genome beginnings: rooting the tree of life

A rooted tree of life provides a framework to answer central questions about the evolution of life. Here we review progress on rooting the tree of life and introduce a new root of life obtained through the analysis of indels, insertions and deletions, found within paralogous gene sets. Through the analysis of indels in eight paralogous gene sets, the root is localized to the branch between the clade consisting of the Actinobacteria and the double-membrane (Gram-negative) prokaryotes and one consisting of the archaebacteria and the firmicutes. This root provides a new perspective on the habitats of early life, including the evolution of methanogenesis, membranes and hyperthermophily, and the speciation of major prokaryotic taxa. Our analyses exclude methanogenesis as a primitive metabolism, in contrast to previous findings. They parsimoniously imply that the ether archaebacterial lipids are not primitive and that the cenancestral prokaryotic population consisted of organisms enclosed by a single, ester-linked lipid membrane, covered by a peptidoglycan layer. These results explain the similarities previously noted by others between the lipid synthesis pathways in eubacteria and archaebacteria. The new root also implies that the last common ancestor was not hyperthermophilic, although moderate thermophily cannot be excluded.     

自然火干扰对新疆喀纳斯旅游区森林景观树种结构的影响

 自然火干扰是森林生态系统的正常行为, 是决定森林物种构成、群落结构和生物多样性的主要因素。该研究将新疆喀纳斯旅游区作为研究对象, 把自然火干扰和树种结构作为不可分割的整体, 就喀纳斯旅游区树种结构对自然火干扰的响应进行了分析。结果表明, 受自然火干扰林分和长期未受干扰林分的树种结构之间存在明显的差异, 自然火干扰对阔叶针叶树种比、树种丰富度(Ma)和Shannon-Wiener多样性指数(H′)存在极显著的影响, 受自然火干扰后, 三者均表现出增大的特征。此外, 所调查范围内曾发生8次自然火干扰事件, 并且不同时期发生的自然火干扰对以阔叶针叶树种比为特质的季相结构和树种丰富度存在极显著的影响。自然火干扰是影响新疆喀纳斯旅游区季相结构和组成结构的主要因素之一。     

Rapid changes in plasticity across generations within an expanding cedar forest

We investigated the inter‐individual variation of phenotypic plasticity and its evolution across three generations within an expanding forest. Plasticity was assessed in situ from dendrochronological data as the response of radial growth to summer rainfall. A linear mixed model was used to account for spatial effects (environment and stand structure), temporal factors (stand dynamics) and the variation with age. Beyond these effects, our results reveal a significant inter‐individual variance of growth and plasticity within each generation. We also show that the mean values and variances of growth and plasticity changed significantly across generations, with different patterns for both traits. The possible environmental and genetic drivers of these changes are discussed. Contrasting with the trade‐off between stress tolerance and plasticity generally observed among populations, we detected a positive covariance at the individual level, which does not support the cost of plasticity hypothesis in this case.     

(25S)-Cholesten-26-oic acid derivatives from an Indonesian soft coral Minabea sp.

(25S)-3-Oxocholesta-1,4-dien-26-oic acid (1) and a new (25S)-18-acetoxy-3-oxocholesta-1,4-dien-26-oic acid (2) were isolated from a soft coral Minabea sp. (cf. aldersladei) collected in North Sulawesi, Indonesia, together with two known cholic-acid-type compounds, 3-oxochol-1,4-dien-24-oic acid (3) and 3-oxochol-4-en-24-oic acid (4). The structures of these compounds were determined on the basis of their spectroscopic data. The absolute stereochemistry at C-25 of 2 was determined by comparative ¹H NMR study using chiral anisotropic reagents [(S)- and (R)-phenylglycine methyl esters]. This is the first to report compound 1 as a natural product.     

Edward Hitchcock’s Pre-Darwinian (1840) “Tree of Life”

The “tree of life” iconography, representing the history of life, dates from at least the latter half of the 18th century, but evolution as the mechanism providing this bifurcating history of life did not appear until the early 19th century. There was also a shift from the straight line, scala naturae view of change in nature to a more bifurcating or tree-like view. Throughout the 19th century authors presented tree-like diagrams, some regarding the Deity as the mechanism of change while others argued for evolution. Straight-line or anagenetic evolution and bifurcating or cladogenetic evolution are known in biology today, but are often misrepresented in popular culture, especially with anagenesis being confounded with scala naturae. Although well known in the mid 19th century, the geologist Edward Hitchcock has been forgotten as an early, if not the first author to publish a paleontologically based “tree of life” beginning in 1840 in the first edition of his popular general geology text Elementary Geology. At least 31 editions were published and those between 1840 and 1859 had this “paleontological chart” showing two trees, one for fossil and living plants and another for animals set within a context of geological time. Although the chart did not vary in later editions, the text explaining the chart did change to reflect newer ideas in paleontology and geology. Whereas Lamarck, Chambers, Bronn, Darwin, and Haeckel saw some form of transmutation as the mechanism that created their “trees of life,” Hitchcock, like his contemporaries Agassiz and Miller, who also produced “trees of life,” saw a deity as the agent of change. Through each edition of his book Hitchcock denounced the newer transmutationist hypotheses of Lamarck, then Chambers, and finally Darwin in an 1860 edition that no longer presented his tree-like “paleontological chart.”     

SYMBIODINIUM (DINOPHYTA) DIVERSITY AND STABILITY IN AQUARIUM CORALS1

Indo‐Pacific reef corals growing for years in closed‐system aquaria provide an alternate means to investigate host–symbiont specificity and stability. The diversity of dinoflagellate endosymbionts (Symbiodinium spp.) from coral communities in private and public aquaria was investigated using molecular‐genetic analyses. Of the 29 symbiont types (i.e., species) identified, 90% belonged to the most prevalent group of Symbiodinium harbored by Indo‐Pacific reef corals, Clade C, while the rest belonged to Clade D. Sixty‐five percent of all types were known from field surveys conducted throughout the Pacific and Indian oceans. Because specific coral–dinoflagellate partnerships appear to have defined geographic distributions, correspondence of the same symbionts in aquarium and field‐collected specimens identifies regions where particular colonies must have been collected in the wild. Symbiodinium spp. in clade D, believed to be “stress‐tolerant” and/or “opportunistic,” occurred in a limited number of individual colonies. The absence of a prevalent, or “weedy,” symbiont suggests that conditions under which aquarium corals are grown do not favor competitive replacements of their native symbiont populations. The finding of typical and diverse assemblages of Symbiodinium spp. among aquarium corals living many years under variable chemical/physical conditions, artificial and natural light, while undergoing fragmentation periodically, indicates that individual colonies maintain stable, long‐term symbiotic associations.     

Altitudinal distribution of territorial Pallas’s Leaf Warblers (Phylloscopus proregulus) in Korea and its disruption by fir (Abies)-planting

Pallas’s Leaf Warbler (Phylloscopus proregulus) is a common breeding bird above 700 m in the forests of the Myohyang range, Korea. Within the largely natural forest are several temple gardens, four of which at 140–520 m held territorial Pallas’s Leaf Warblers. All had mature planted firs (Abies), which occur naturally in the area only over 1,000 m. The planted firs evidently stimulated the warblers to settle below their natural altitudinal range, but cannot be the only stimulus because the natural lower distribution of the warbler is 300 m below that of the tree.     

沈阳市四种乔木树种BVOCs排放特征

采用热解析与气相色谱联用技术对沈阳市4种主要乔木树种--银中杨、垂柳、榆树和皂角的BVOCs排放特征进行了观测.实验发现,不同树种排放BVOCs的组成情况明显不同,银中杨和垂柳以释放异戊二烯为主,且二者的BVOCs排放速率明显高于其他树种;榆树和皂角以释放柠檬烯为主.4种乔木树种BVOCs的释放具有显著的日变化和季节变化规律,各树种的BVOCs排放速率日变化曲线多表现为单峰型,排放高峰一般出现在中午或下午,且夜间几乎均不排放异戊二烯.季节变化趋势主要表现为夏季最高,春、秋季较低.     

造礁石珊瑚与其共生藻(Symbiodinium)共生研究进展

对造礁石珊瑚与其共生藻共生研究现状及其在全球变化下的适应能力进行较全面的综述.造礁石珊瑚与遗传和生理功能独特的共生藻组成内共生关系是成功演化的范例.近年来对珊瑚共生体的分子系统学研究表明共生藻遗传多样性极为丰富,当前认为共生藻属至少包括8个(A-H)各自包含亚系群的世系或系群.珊瑚-共生藻共生功能体对诸如全球变化引起的海水温度上升等环境变化十分敏感.由于珊瑚以及珊瑚礁面临气候变化的严峻挑战,对珊瑚与其共生藻共生关系和共生功体适应能力的研究将是未来重要的研究领域之一.